genome.fa.s18.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  52  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20160960--20161021	30	2.1	30	90	0	97	33	12	14	38	1.84
20161065--20161106	21	2.0	21	90	0	66	33	11	16	38	1.86
20187068--20187160	18	5.2	18	85	0	132	29	23	15	32	1.95
20193670--20194007	119	3.0	115	88	8	525	35	11	5	48	1.61
20213341--20213365	12	2.1	12	100	0	50	32	8	0	60	1.26
20214263--20214330	22	3.1	22	72	8	66	35	1	1	61	1.14
20214262--20214341	35	2.2	36	80	14	94	35	1	2	61	1.18
20218966--20219029	21	3.0	22	70	25	64	39	25	15	20	1.92
20221292--20221387	47	2.0	47	95	0	174	47	4	4	43	1.41
20227224--20227498	137	2.0	137	97	0	514	26	13	14	45	1.82
20242515--20242788	136	2.0	137	97	0	514	26	13	14	45	1.82
20250055--20250094	18	2.2	18	90	0	62	27	5	47	20	1.70
20259053--20259090	14	2.8	14	80	4	51	44	0	0	55	0.99
20259236--20259281	19	2.3	20	81	7	58	43	2	4	50	1.34
20259903--20259983	20	4.1	20	79	9	85	64	7	2	25	1.33
20260048--20260094	16	2.9	16	78	6	51	65	2	2	29	1.15
20260596--20260745	9	16.0	9	72	13	56	35	1	4	58	1.27
20260678--20260745	28	2.5	26	76	9	73	38	0	1	60	1.06
20281528--20281707	58	3.2	56	77	11	145	26	16	17	39	1.91
20281562--20281716	58	2.7	58	83	2	186	29	16	17	37	1.91
20301831--20301924	31	3.0	31	90	3	143	44	12	9	32	1.75
20305065--20305124	19	3.2	18	79	11	59	0	8	15	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20305679--20305774	31	3.1	31	90	3	156	46	12	8	32	1.71
20311262--20311306	23	1.9	24	81	4	56	42	0	8	48	1.34
20313895--20313929	17	2.0	18	94	5	63	34	11	8	45	1.71
20334599--20334758	80	2.0	80	92	0	266	35	18	29	17	1.94
20334839--20334882	15	3.1	14	84	9	54	20	0	0	79	0.73
20334839--20334882	7	6.4	7	92	2	63	20	0	0	79	0.73
20334829--20334955	67	1.9	64	80	10	141	35	0	0	62	1.06
20339746--20339776	5	6.2	5	100	0	62	38	0	0	61	0.96
20339816--20339866	20	2.8	19	85	14	72	72	7	19	0	1.08
20339816--20339870	18	3.0	19	80	20	64	72	7	20	0	1.07
20340746--20340803	25	2.3	25	82	5	64	15	24	22	37	1.93
20340784--20340827	22	2.0	22	90	0	70	13	20	20	45	1.85
20341897--20341935	17	2.3	17	86	0	51	28	17	23	30	1.97
20347071--20347144	37	2.0	36	82	12	87	33	21	1	43	1.61
20347445--20347486	22	1.9	23	85	9	61	7	14	4	73	1.21
20351814--20351924	40	2.8	40	78	12	113	54	0	9	34	1.40
20351985--20352027	21	2.0	22	90	4	70	55	4	4	34	1.41
20355239--20355370	67	2.0	67	90	0	210	25	34	18	21	1.96
20364607--20364631	6	4.2	6	100	0	50	48	0	0	52	1.00
20379354--20379420	34	1.9	35	93	3	118	46	11	8	32	1.72
20385876--20385916	16	2.6	16	88	7	57	48	41	7	2	1.44
20388319--20388384	21	3.2	21	74	8	82	46	4	24	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20394092--20394387	99	3.0	99	93	1	502	22	25	17	34	1.96
20408133--20408187	18	2.8	20	71	18	62	61	3	3	30	1.30
20408195--20408269	32	2.3	32	84	4	89	48	14	8	29	1.72
20408260--20408325	34	1.9	34	87	6	98	48	10	6	34	1.62
20408580--20408614	18	2.0	18	88	5	54	71	5	2	20	1.19
20411585--20411626	23	1.9	22	85	9	59	30	19	11	38	1.88
20417424--20417452	15	2.0	15	93	6	51	48	0	6	44	1.29
20422118--20422147	15	2.0	15	93	0	51	66	0	10	23	1.21
20437687--20437715	7	4.1	7	100	0	58	68	0	0	31	0.89
20454022--20454074	21	2.5	20	85	8	70	60	1	1	35	1.19
20454936--20455206	104	2.6	105	84	4	370	33	19	17	29	1.95
20455212--20455458	104	2.4	104	77	7	252	26	19	18	35	1.95
20455265--20455530	106	2.5	104	79	8	259	28	20	18	31	1.97
20464082--20464276	41	4.8	41	96	0	345	25	21	27	25	1.99
20466855--20466949	22	4.3	22	69	15	70	37	9	2	50	1.47
20471994--20472076	40	2.0	42	86	9	118	66	0	1	32	1.00
20474021--20474051	4	7.8	4	92	0	53	45	0	0	54	0.99
20474026--20474074	16	3.0	16	84	3	53	42	8	0	48	1.32
20479864--20479903	18	2.2	19	86	4	55	20	7	5	67	1.34
20499184--20499306	38	3.3	39	82	16	163	26	19	29	25	1.99
20499184--20499353	37	4.6	38	78	14	178	26	20	28	24	1.99
20501900--20501994	22	4.3	22	69	15	70	37	9	2	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20506961--20507032	28	2.5	28	80	6	83	65	1	1	31	1.10
20507845--20507882	18	2.1	19	90	5	60	39	0	0	60	0.97
20508980--20509010	4	7.8	4	92	0	53	45	0	0	54	0.99
20508985--20509033	16	3.0	16	84	3	53	42	8	0	48	1.32
20510575--20510628	23	2.4	21	81	9	54	46	3	0	50	1.19
20514780--20514817	17	2.2	18	85	4	51	21	7	5	65	1.38
20524023--20524521	44	11.5	44	70	10	223	29	20	22	27	1.99
20524023--20524305	85	3.3	85	72	12	218	28	20	22	28	1.98
20524153--20524483	129	2.6	128	82	3	387	29	20	22	27	1.99
20524017--20524397	173	2.2	173	83	3	480	30	19	21	28	1.98
20524153--20524527	129	2.9	129	80	7	327	29	20	23	26	1.99
20526498--20526538	19	2.2	19	86	4	57	34	2	2	60	1.23
20527284--20527327	23	1.9	23	95	0	79	45	9	0	45	1.35
20527500--20527535	10	3.6	10	88	0	54	75	0	25	0	0.81
20527562--20527600	19	2.0	21	85	10	55	23	0	10	66	1.22
20528220--20528264	18	2.5	18	88	0	72	31	2	48	17	1.59
20529449--20529489	20	2.0	20	100	0	82	46	14	29	9	1.77
20534032--20534177	5	30.6	5	73	15	64	0	32	0	67	0.96
20534046--20534176	4	32.0	4	73	19	85	0	30	0	68	0.95
20533977--20534176	79	2.5	78	80	15	225	0	31	0	68	0.94
20533985--20534172	40	4.7	39	71	22	135	0	31	0	67	0.95
20534130--20534185	27	2.1	27	90	6	87	0	37	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534219--20534290	27	2.7	26	85	6	90	16	29	26	27	1.97
20538705--20538735	3	10.3	3	92	0	53	67	3	0	29	1.06
20538878--20538917	20	2.0	21	90	5	64	60	0	0	40	0.97
20538962--20538995	3	11.3	3	93	0	59	32	2	0	64	1.08
20541351--20541379	7	4.3	7	95	4	51	68	0	31	0	0.89
20548329--20548676	87	4.0	87	88	0	464	14	26	14	45	1.83
20552050--20552083	9	3.8	9	88	0	50	23	29	2	44	1.68
20563193--20563232	22	2.0	20	85	14	55	22	12	0	65	1.26
20566937--20567176	46	5.5	45	84	11	304	34	15	22	27	1.94
20566973--20567045	36	2.0	36	94	0	128	38	15	20	26	1.92
20566937--20567163	82	2.6	86	88	7	320	34	15	21	28	1.94
20574928--20574952	12	2.1	12	100	0	50	24	36	24	16	1.94
20575113--20575164	9	5.8	9	93	0	77	38	26	9	25	1.86
20575267--20575376	39	2.8	39	98	0	211	20	1	26	50	1.58
20579031--20579057	12	2.2	12	100	0	54	0	14	0	85	0.61
20592774--20592802	12	2.3	13	94	5	51	0	13	0	86	0.58
20599300--20599325	13	2.0	13	100	0	52	53	0	7	38	1.30
20604586--20604630	23	2.0	22	83	12	56	42	0	8	48	1.34
20610519--20610557	19	2.0	20	85	5	53	30	2	2	64	1.21
20617229--20617426	50	3.8	50	85	4	243	21	29	23	25	1.99
20617238--20617426	106	1.8	100	87	6	279	21	29	23	26	1.99
20617521--20617552	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20617764--20617821	30	1.9	30	89	0	89	31	24	3	41	1.71
20619540--20619695	72	2.2	73	80	1	170	44	12	8	33	1.74
20619726--20619840	58	2.0	57	84	5	151	46	12	5	35	1.63
20621826--20621875	23	2.2	23	100	0	100	16	4	18	62	1.48
20622716--20622877	77	2.0	79	92	7	274	27	11	26	34	1.91
20623129--20623153	2	12.5	2	100	0	50	52	48	0	0	1.00
20623602--20623756	77	2.0	77	100	0	310	40	6	20	32	1.78
20625443--20625482	16	2.5	16	87	0	53	47	5	7	40	1.54
20625471--20625614	68	2.1	67	92	2	245	41	4	9	45	1.55
20625555--20625582	9	3.1	9	100	0	56	32	0	10	57	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208