genome.fa.s18.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  28  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10915269--10915346	31	2.5	31	87	8	115	47	2	0	50	1.15
10915679--10915750	25	2.9	25	76	0	81	43	23	2	30	1.68
10917446--10917516	21	3.4	21	80	0	79	33	18	45	2	1.64
10917839--10918002	42	3.9	42	83	2	177	31	20	20	26	1.98
10917928--10918130	42	4.8	42	89	3	293	23	22	21	32	1.98
10920223--10920271	19	2.5	19	81	18	57	75	2	4	18	1.06
10920223--10920273	20	2.7	18	79	11	57	74	1	3	19	1.07
10920496--10920559	32	2.0	32	85	11	87	37	9	9	43	1.69
10921619--10921682	21	3.0	21	86	0	74	31	26	9	32	1.88
10921997--10922041	20	2.2	20	84	0	54	28	0	8	62	1.25
10925245--10925279	18	2.0	18	88	5	54	37	0	14	48	1.44
10927361--10927408	22	2.2	22	82	17	57	58	6	4	31	1.42
10934404--10934440	3	12.7	3	94	5	67	70	0	0	29	0.88
10934407--10934458	23	2.1	27	86	13	76	71	0	1	26	0.97
10942598--10942640	19	2.3	19	84	8	52	27	2	2	67	1.15
10944986--10945027	20	2.1	20	86	8	59	52	2	0	45	1.13
10949596--10949635	20	2.0	21	85	5	55	40	15	30	15	1.87
10952591--10952625	15	2.3	15	90	0	52	17	37	11	34	1.85
10954356--10954400	23	2.0	22	82	8	54	33	4	2	60	1.29
10957401--10957514	50	2.3	51	87	1	167	28	25	14	32	1.94
10968757--10968822	30	2.1	31	83	5	80	43	1	0	54	1.09
10974257--10974487	85	2.7	85	95	0	408	26	16	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10979164--10979203	20	2.0	22	85	14	59	57	2	0	40	1.12
10981615--10981684	16	4.4	16	94	0	95	32	0	34	32	1.58
10981662--10981772	45	2.6	43	80	9	131	32	5	30	31	1.80
10981918--10981952	18	2.0	17	88	5	52	54	0	0	45	0.99
10981933--10982240	61	5.1	61	67	16	237	49	6	1	42	1.39
10981904--10982302	61	6.7	58	64	17	165	49	5	2	43	1.37
10982017--10982068	15	3.6	15	80	12	56	53	1	0	44	1.11
10982127--10982311	59	3.1	57	69	22	155	50	4	2	42	1.36
10981904--10982313	120	3.4	120	94	0	705	49	4	2	43	1.36
10982352--10982431	39	2.2	37	88	8	119	58	12	6	22	1.56
10994513--10994552	20	2.0	21	85	5	55	57	0	5	37	1.21
10994695--10994741	24	2.0	23	83	4	58	42	6	0	51	1.27
10994769--10994824	17	3.2	18	72	20	55	51	3	1	42	1.29
10994854--10994892	16	2.4	17	87	12	55	48	2	2	46	1.29
10994798--10994924	59	2.1	61	88	5	188	48	3	4	42	1.42
10998778--10998849	30	2.5	30	79	4	85	59	5	8	26	1.48
11010034--11010080	20	2.2	23	78	17	57	59	0	4	36	1.17
11012445--11012474	15	2.0	15	100	0	60	33	6	0	60	1.23
11030615--11030648	2	16.5	2	87	6	50	44	2	50	2	1.32
11037371--11037399	3	9.7	3	100	0	58	0	31	0	68	0.89
11056567--11056627	19	3.2	19	68	11	52	65	6	4	22	1.36
11056863--11056913	17	3.0	17	73	21	52	31	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11061101--11061125	9	2.8	9	100	0	50	88	0	0	12	0.53
11061588--11061653	33	2.0	33	100	0	132	54	18	3	24	1.57
11061735--11061849	46	2.5	45	91	2	185	58	12	1	27	1.44
11070006--11070044	19	2.1	18	85	4	51	30	10	12	46	1.75
11070095--11070140	15	2.9	16	78	15	51	78	0	10	10	0.97
11079672--11079721	23	2.2	22	86	13	75	46	14	6	34	1.69
11085876--11085901	6	4.3	6	100	0	52	0	0	15	84	0.62
11102610--11102643	6	5.7	6	92	0	59	20	0	44	35	1.52
11102612--11102651	18	2.2	19	95	4	73	22	0	42	35	1.54
11109518--11109555	13	2.8	13	82	17	51	68	0	0	31	0.90
11119590--11119735	50	2.9	51	83	4	188	29	26	18	25	1.98
11119888--11119919	16	2.0	16	93	0	55	43	9	6	40	1.62
11120850--11120901	26	1.9	26	84	7	68	42	9	1	46	1.47
11122639--11122663	3	8.3	3	100	0	50	36	0	0	64	0.94
11127597--11127701	25	4.3	24	73	15	81	20	24	20	33	1.97
11138142--11138184	21	2.0	21	90	0	68	20	30	20	27	1.98
11141107--11141171	29	2.2	29	88	0	103	43	16	7	32	1.77
11149865--11149994	64	2.0	64	95	0	233	36	20	11	32	1.88
11157397--11157437	21	2.0	21	90	0	64	19	29	21	29	1.98
11161050--11161101	13	4.1	13	77	2	52	75	3	1	19	1.06
11162623--11162683	31	2.0	29	81	12	70	37	4	4	52	1.45
11175349--11175381	16	2.2	15	89	10	50	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11192712--11192740	2	14.5	2	100	0	58	0	48	0	51	1.00
11196610--11196667	29	2.0	29	100	0	116	27	31	20	20	1.98
11197108--11197228	51	2.4	51	91	0	206	42	0	27	30	1.56
11207689--11207763	25	2.8	25	82	11	78	45	10	21	22	1.82
11211586--11212060	236	2.0	236	96	0	869	42	14	16	26	1.86
11215853--11215900	19	2.5	19	78	21	55	68	2	2	27	1.11
11215845--11215985	10	14.4	9	69	17	59	62	4	0	31	1.22
11215805--11215983	19	9.3	19	67	12	53	59	7	1	32	1.32
11217561--11217627	31	2.3	28	78	14	73	37	4	11	46	1.61
11222549--11222575	13	2.1	13	100	0	54	37	0	22	40	1.54
11230551--11230592	21	2.0	21	86	9	59	16	38	0	45	1.48
11234167--11234202	3	12.3	3	94	5	65	36	0	30	33	1.58
11245076--11245286	105	2.0	107	92	4	360	45	11	4	38	1.61
11247329--11247385	25	2.3	25	87	6	80	75	5	7	12	1.17
11259406--11259432	13	2.1	13	100	0	54	48	14	7	29	1.71
11264977--11265002	5	5.2	5	100	0	52	0	0	19	80	0.71
11265925--11265975	27	1.9	26	84	11	68	60	1	3	33	1.26
11266657--11266696	20	2.0	20	90	9	64	65	0	10	25	1.24
11269673--11269725	9	5.9	9	93	0	79	35	28	9	26	1.87
11269673--11269729	18	3.2	18	87	0	87	35	26	8	29	1.87
11269673--11269729	27	2.1	27	93	0	96	35	26	8	29	1.87
11271418--11271453	19	1.9	19	94	5	65	44	16	16	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11272410--11272544	40	3.4	39	74	7	130	32	23	17	26	1.96
11272410--11272545	41	3.5	40	73	9	118	33	23	16	26	1.96
11273057--11273092	18	1.9	19	88	5	56	33	27	0	38	1.57
11273439--11273472	15	2.1	17	89	10	54	47	0	0	52	1.00
11273442--11273496	13	4.2	13	80	15	60	47	1	0	50	1.11
11273451--11273504	28	2.0	27	85	7	74	48	3	0	48	1.19
11275002--11275275	136	2.0	133	95	2	494	26	6	22	44	1.78
11298957--11298985	14	2.0	15	93	6	51	34	0	0	65	0.93
11300189--11300404	86	2.5	86	76	8	224	43	16	7	32	1.75
11300565--11300702	10	14.4	10	64	20	55	65	1	2	30	1.16
11300571--11300619	19	2.5	20	83	10	64	63	0	2	34	1.06
11300622--11300702	18	4.3	19	77	14	87	65	2	1	30	1.13
11300622--11300702	10	8.5	10	71	17	57	65	2	1	30	1.13
11300633--11300702	29	2.4	29	85	2	106	67	2	1	28	1.14
11300633--11300715	20	4.3	19	77	11	73	65	4	2	27	1.26
11300886--11301003	19	6.2	19	68	14	55	28	7	0	62	1.28
11301066--11301110	22	2.1	21	87	4	63	35	2	0	62	1.08
11301083--11301130	19	2.4	22	80	16	59	33	0	0	66	0.92
11301042--11301112	29	2.4	28	75	9	70	39	2	0	57	1.13
11303973--11304101	49	2.6	49	91	0	204	24	26	19	30	1.98
11306421--11306474	21	2.6	20	78	16	56	38	1	3	55	1.28
11311266--11311321	26	2.2	26	83	0	67	37	1	23	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11321711--11321858	73	2.0	74	98	1	289	35	9	13	41	1.77
11324650--11324843	45	4.3	45	89	0	271	41	13	19	25	1.88
11325461--11325603	70	2.1	64	88	7	214	51	13	18	16	1.76
11325743--11325787	19	2.3	19	84	3	54	75	4	6	13	1.15
11331123--11331316	45	4.3	45	89	0	271	40	14	19	25	1.90
11343393--11343418	6	4.3	6	100	0	52	61	0	19	19	1.35
11347547--11347586	12	3.0	14	82	17	50	42	0	0	57	0.98
11348127--11348165	19	2.0	19	85	5	51	30	0	5	64	1.15
11374327--11374474	73	2.0	74	98	1	289	35	9	13	41	1.77
11377258--11377448	44	4.3	45	86	3	262	41	14	19	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208