genome.fa.s18.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  142  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46268919--46268982	27	2.4	26	89	2	92	40	3	4	51	1.38
46269059--46269134	36	2.0	39	90	7	122	50	6	15	27	1.69
46277666--46277726	32	1.9	32	83	12	81	44	4	1	49	1.33
46282893--46282929	17	2.2	17	90	0	56	21	35	0	43	1.53
46284523--46284571	23	2.2	22	82	10	55	40	2	6	51	1.38
46290133--46290316	92	2.0	92	92	0	305	39	13	21	26	1.90
46299773--46299797	13	1.9	13	100	0	50	24	16	0	60	1.36
46304217--46304293	40	1.9	39	82	10	93	32	25	19	22	1.97
46305825--46305913	28	3.2	28	91	1	135	29	22	24	23	1.99
46306230--46306284	27	2.0	27	82	0	65	34	20	12	32	1.90
46306278--46306352	27	2.8	26	80	8	87	16	18	26	38	1.91
46310317--46310384	27	2.5	28	83	7	86	58	10	4	26	1.49
46310420--46310445	10	2.6	10	100	0	52	15	0	7	76	0.99
46312174--46312218	24	1.9	24	86	4	65	24	8	0	66	1.20
46312449--46312475	8	3.4	8	100	0	54	29	0	0	70	0.88
46316319--46316379	21	2.9	22	78	4	54	18	36	26	19	1.94
46326191--46326234	22	2.0	22	95	0	79	29	4	34	31	1.78
46349373--46349424	27	1.9	27	100	0	104	30	23	5	40	1.78
46349373--46349419	15	3.3	15	71	17	55	29	19	6	44	1.75
46351746--46351806	30	2.0	32	87	6	90	50	8	3	37	1.48
46362801--46362855	18	3.2	18	72	12	53	47	1	1	49	1.23
46364893--46365492	299	2.0	299	99	0	1182	38	6	15	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46376369--46376455	29	3.0	29	91	1	129	28	25	17	28	1.97
46378752--46378788	19	2.0	19	89	5	58	62	2	0	35	1.10
46378835--46378868	14	2.5	14	95	4	61	38	0	0	61	0.96
46378931--46378961	10	2.9	11	90	9	55	54	0	0	45	0.99
46378930--46378964	16	2.2	16	89	0	52	54	0	0	45	0.99
46386017--46386055	17	2.4	17	86	4	53	23	0	2	74	0.94
46389662--46389704	22	2.0	22	85	0	59	37	11	13	37	1.82
46390296--46390325	13	2.4	13	94	5	53	63	6	0	30	1.20
46400534--46400568	16	2.1	17	89	5	54	42	0	11	45	1.40
46402850--46402981	49	2.7	48	88	4	185	50	2	6	40	1.42
46404350--46404374	11	2.3	11	100	0	50	44	8	0	48	1.32
46407639--46408067	47	9.1	47	91	1	651	32	8	29	28	1.87
46410232--46410273	21	2.0	21	90	9	68	61	4	9	23	1.45
46411799--46411947	37	4.1	37	89	4	216	34	24	8	32	1.85
46411882--46411956	33	2.4	29	73	23	80	33	21	8	37	1.83
46412164--46412270	41	2.6	41	89	5	146	29	22	20	27	1.98
46414226--46414314	35	2.5	35	92	0	151	11	10	33	44	1.74
46423914--46423946	18	1.9	17	88	11	50	30	15	12	42	1.83
46424805--46424944	32	4.4	32	80	6	142	37	22	20	19	1.94
46424945--46424998	26	2.1	26	86	6	74	38	22	16	22	1.93
46425113--46425197	24	3.5	24	88	0	107	45	20	8	25	1.78
46425220--46425441	27	8.2	27	76	4	178	22	21	20	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46425220--46425417	81	2.4	81	80	5	213	22	21	19	36	1.95
46441863--46441926	26	2.5	26	100	0	128	31	26	15	26	1.96
46448659--46448736	29	2.7	28	84	11	104	25	14	30	29	1.94
46453028--46453215	59	3.2	59	66	11	150	41	3	3	51	1.35
46453017--46453305	119	2.4	120	92	2	483	43	2	3	50	1.33
46453137--46453192	15	3.5	18	75	24	63	42	0	0	57	0.99
46453091--46453273	56	3.1	58	65	23	137	42	2	5	49	1.38
46453257--46453291	18	2.0	17	88	5	52	45	0	0	54	0.99
46453245--46453519	147	1.9	149	95	1	500	47	2	3	46	1.35
46453404--46453438	18	2.0	17	88	5	52	45	0	0	54	0.99
46453600--46453694	45	2.1	44	84	1	118	33	25	5	35	1.78
46453675--46453742	16	4.2	16	94	0	109	36	35	0	27	1.58
46461627--46461704	29	2.7	28	80	11	95	26	14	29	29	1.95
46461657--46461984	174	1.9	174	94	0	575	29	14	24	31	1.95
46468730--46468768	20	2.0	20	85	10	53	48	0	0	51	1.00
46472857--46473001	45	3.2	45	95	1	256	24	20	10	44	1.82
46473840--46473892	26	2.0	26	100	0	106	28	18	3	49	1.65
46478069--46478123	27	2.0	27	96	0	101	41	12	14	30	1.83
46481383--46481431	24	2.0	24	84	7	64	12	14	42	30	1.82
46481511--46481537	3	9.0	3	100	0	54	0	0	66	33	0.92
46483032--46483081	16	3.2	16	70	16	50	54	4	0	42	1.19
46483036--46483104	31	2.3	30	89	2	102	56	2	0	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46483454--46483487	16	2.1	17	88	5	52	29	20	0	50	1.49
46484748--46484784	19	1.9	19	88	0	56	51	2	35	10	1.51
46492336--46492366	16	1.9	16	93	0	53	35	3	9	51	1.51
46503334--46503380	17	2.6	18	86	10	69	65	0	0	34	0.93
46503344--46503373	8	3.6	8	91	8	51	66	0	0	33	0.92
46506661--46506698	18	2.1	18	100	0	76	34	15	15	34	1.90
46513953--46514005	10	5.1	10	86	8	61	62	5	0	32	1.19
46517823--46517939	62	1.9	61	84	5	157	49	4	2	43	1.35
46517918--46517967	20	2.7	19	80	20	61	52	0	2	46	1.12
46517924--46517971	25	1.9	25	83	8	62	52	0	2	45	1.12
46521912--46521979	29	2.3	30	82	7	95	27	29	13	29	1.94
46521801--46522127	173	1.9	174	92	0	548	31	24	14	30	1.94
46522088--46522158	29	2.4	30	84	13	103	29	28	14	28	1.95
46529869--46529927	16	3.7	16	93	0	91	28	0	35	35	1.58
46529908--46530000	42	2.1	42	84	5	114	37	4	25	32	1.76
46530119--46530166	16	2.9	18	73	14	50	47	2	0	50	1.12
46530154--46530196	17	2.6	16	85	7	50	55	2	0	41	1.12
46530270--46530319	14	3.5	15	81	8	59	54	2	0	44	1.11
46530268--46530330	28	2.2	29	78	13	69	52	3	0	44	1.17
46530270--46530533	105	2.5	107	80	14	305	52	4	2	40	1.34
46530374--46530429	14	3.9	15	76	19	57	58	1	0	39	1.08
46530374--46530429	15	3.9	16	77	17	52	58	1	0	39	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46530488--46530533	18	2.6	18	82	6	58	52	0	2	45	1.13
46545058--46545099	23	1.9	22	85	9	59	21	4	7	66	1.35
46550226--46550279	22	2.3	24	81	9	67	35	5	7	51	1.53
46551889--46551942	25	2.2	25	86	6	74	44	0	1	53	1.11
46553191--46553256	13	5.6	12	69	20	50	48	13	0	37	1.43
46553191--46553259	23	3.0	23	95	0	120	47	13	0	39	1.42
46560438--46560632	103	1.9	104	86	1	284	27	19	22	31	1.98
46560544--46560722	66	2.8	66	83	6	233	25	19	22	32	1.97
46561643--46561785	72	2.0	72	90	0	223	21	15	23	39	1.91
46563517--46563586	29	2.4	28	86	11	97	28	14	28	28	1.95
46563547--46563874	174	1.9	174	94	0	575	30	14	24	30	1.95
46583037--46583072	10	3.6	10	85	14	56	63	0	0	36	0.94
46593419--46593667	99	2.5	99	93	1	419	34	21	14	28	1.93
46593932--46593976	22	2.0	22	86	0	63	66	0	22	11	1.22
46594080--46594164	44	1.9	44	85	4	118	18	2	28	50	1.59
46595564--46595596	16	2.1	16	100	0	66	36	6	36	21	1.78
46595819--46595855	15	2.6	15	87	8	51	51	0	0	48	1.00
46595819--46595860	15	2.9	14	86	10	50	54	0	0	45	0.99
46595939--46595980	15	2.9	15	82	10	52	52	0	0	47	1.00
46595808--46596134	120	2.7	120	93	0	548	48	4	1	44	1.32
46601632--46601665	13	2.6	13	95	0	59	55	0	2	41	1.15
46605510--46605554	22	2.0	23	86	4	65	15	11	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46605513--46605554	23	1.9	22	85	9	59	14	11	0	73	1.09
46608465--46608741	27	10.4	28	76	9	208	41	18	18	22	1.91
46608465--46608736	54	5.1	54	77	5	266	41	18	17	22	1.90
46608577--46608623	24	2.0	24	91	0	76	31	23	21	23	1.98
46608512--46608700	105	1.8	105	85	2	272	40	20	18	20	1.91
46608918--46608988	26	2.7	26	88	0	106	15	22	21	40	1.90
46609101--46609156	27	2.1	27	83	6	69	21	25	21	32	1.98
46616092--46616366	27	10.2	27	80	3	268	42	18	17	21	1.90
46616092--46616366	81	3.4	81	80	2	302	42	18	17	21	1.90
46616561--46616647	26	3.3	26	81	9	106	21	24	18	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208