genome.fa.s18.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  125  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41060592--41060658	17	3.8	17	71	13	55	28	5	1	64	1.26
41060571--41060651	36	2.2	37	84	8	112	29	6	3	60	1.38
41060630--41060713	24	3.1	27	74	17	93	21	7	3	67	1.30
41060743--41060797	27	2.0	27	86	6	76	34	0	5	60	1.20
41064354--41064399	14	3.0	16	75	12	60	32	0	15	52	1.43
41064446--41064475	9	3.3	9	90	0	51	46	13	10	30	1.75
41064607--41064659	24	2.2	25	86	3	72	50	3	0	45	1.19
41064610--41064660	26	1.9	27	84	11	70	50	3	0	45	1.20
41064590--41064682	44	2.2	44	83	11	122	51	3	1	44	1.24
41065834--41065929	43	2.2	43	83	3	113	34	14	20	30	1.93
41067792--41067890	42	2.4	42	91	0	153	23	27	13	36	1.92
41071790--41072887	132	8.3	132	92	0	1736	28	24	18	29	1.98
41072622--41072817	44	4.5	44	65	10	121	28	23	15	32	1.95
41071790--41072879	526	2.1	528	92	0	1788	28	24	18	29	1.98
41073685--41073709	13	1.9	13	100	0	50	56	8	24	12	1.62
41080702--41080735	17	2.0	17	88	0	50	55	5	11	26	1.58
41083979--41084067	29	3.0	30	88	3	135	25	10	38	25	1.87
41086133--41086182	2	25.0	2	100	0	100	50	0	50	0	1.00
41097752--41097780	7	4.1	7	100	0	58	31	0	27	41	1.56
41097943--41098038	48	2.0	48	89	4	149	19	16	26	37	1.93
41100515--41100544	16	1.9	15	93	6	51	36	3	26	33	1.73
41101384--41101428	23	2.0	24	86	8	67	53	4	0	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41106550--41106584	17	2.0	18	94	5	63	45	5	14	34	1.68
41107807--41108278	238	2.0	239	93	0	811	30	24	8	35	1.86
41110751--41110837	25	3.5	25	74	16	81	32	19	25	22	1.98
41110823--41110913	24	3.8	24	73	7	85	36	24	25	14	1.93
41110938--41111007	25	2.8	25	67	2	61	37	14	25	22	1.92
41121195--41121234	20	2.0	20	85	9	55	35	30	30	5	1.79
41125318--41125364	25	1.9	25	87	12	71	65	8	12	12	1.46
41126736--41126814	26	3.1	26	87	1	106	36	29	21	12	1.90
41126985--41127345	27	13.4	27	79	7	349	23	14	18	43	1.87
41126985--41127346	81	4.5	81	81	3	399	23	14	18	43	1.87
41129860--41130106	90	2.7	90	76	9	225	34	19	15	30	1.93
41133763--41133806	18	2.5	18	82	10	56	63	9	0	27	1.24
41134326--41134439	58	2.0	58	85	3	158	13	27	9	50	1.72
41136648--41136710	23	2.7	24	83	16	96	15	7	22	53	1.67
41139505--41139531	11	2.5	11	100	0	54	22	7	18	51	1.70
41139584--41139634	7	7.4	7	76	12	52	37	0	5	56	1.23
41139590--41139661	20	3.7	20	67	10	67	34	0	8	56	1.29
41139584--41139637	27	2.0	27	85	7	74	38	0	5	55	1.23
41141117--41141893	120	6.5	120	96	0	1351	43	2	5	49	1.38
41141584--41141631	18	2.8	18	74	22	50	43	0	0	56	0.99
41141584--41141647	16	3.8	16	75	19	51	43	0	0	56	0.99
41141730--41141776	16	3.0	16	78	12	53	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41142105--41142142	16	2.4	16	86	0	58	28	34	2	34	1.71
41147459--41147507	23	2.1	23	100	0	98	30	14	8	46	1.73
41148576--41148879	161	1.9	161	99	0	599	49	6	12	31	1.66
41152606--41152657	21	2.5	21	78	6	61	55	3	1	38	1.29
41152642--41152670	12	2.4	12	100	0	58	58	0	0	41	0.98
41152714--41152769	25	2.2	27	78	12	64	50	5	1	42	1.35
41154068--41154126	12	5.1	12	75	8	59	42	10	11	35	1.76
41154069--41154126	23	2.5	23	88	0	89	43	10	12	34	1.76
41155206--41155257	20	2.6	20	84	0	68	44	21	23	11	1.84
41155895--41156020	22	5.3	24	77	10	118	38	19	23	17	1.93
41155940--41156020	25	3.3	25	82	1	92	38	20	24	16	1.92
41157118--41157157	13	3.1	13	85	7	55	60	0	0	40	0.97
41158317--41158374	9	6.4	9	79	0	62	43	18	8	29	1.80
41158515--41158539	13	1.9	13	100	0	50	12	0	48	40	1.40
41158516--41158563	18	2.6	19	83	3	62	10	2	45	41	1.50
41170212--41170260	12	4.1	12	89	0	62	71	2	4	22	1.13
41170212--41170259	13	3.9	13	86	13	57	72	2	4	20	1.11
41170300--41170332	13	2.5	13	95	0	57	69	3	12	15	1.30
41176158--41176197	18	2.2	18	86	4	53	12	27	0	60	1.33
41183108--41183141	9	3.7	9	92	4	50	73	8	5	11	1.24
41184451--41184490	18	2.2	18	86	0	53	65	2	25	7	1.32
41197724--41197809	41	2.1	41	93	0	145	29	13	18	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41201821--41201855	13	2.7	13	90	0	52	45	0	11	42	1.40
41204563--41204589	12	2.2	12	100	0	54	37	11	29	22	1.89
41216967--41217021	29	2.0	29	86	13	80	16	14	9	60	1.59
41221416--41221516	52	1.9	52	93	0	175	33	21	17	26	1.96
41222807--41222876	24	2.9	23	68	17	61	11	18	2	67	1.34
41227716--41227809	46	2.0	46	91	4	154	36	22	17	24	1.95
41231136--41231173	19	2.0	19	90	10	60	42	31	10	15	1.81
41234830--41234881	23	2.3	22	75	21	54	9	23	1	65	1.32
41243820--41243859	18	2.2	18	86	0	53	65	2	25	7	1.32
41262363--41262399	19	1.9	19	89	10	58	16	10	32	40	1.83
41262424--41262542	58	2.0	59	96	1	222	19	23	26	31	1.98
41263246--41263309	22	3.0	21	88	6	92	29	4	34	31	1.78
41269696--41269749	19	2.8	18	83	5	63	9	5	3	81	0.97
41270058--41270100	22	1.9	23	85	4	61	25	2	34	37	1.69
41272410--41272462	23	2.4	22	75	9	54	9	18	1	69	1.25
41272455--41272493	18	2.2	18	85	0	51	7	23	2	66	1.30
41287386--41287427	20	2.4	17	84	15	50	50	0	26	23	1.50
41292439--41292681	50	4.8	50	84	2	308	20	29	22	27	1.98
41293148--41293232	43	2.0	43	100	0	170	40	21	11	27	1.88
41297953--41298056	41	2.5	41	82	3	138	27	20	29	22	1.98
41305052--41305188	74	1.9	72	82	10	170	42	3	13	40	1.62
41305031--41305188	76	2.1	75	82	11	184	41	3	14	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41305640--41305743	41	2.5	41	85	3	147	27	21	29	21	1.98
41310567--41310633	31	2.3	30	90	10	104	31	7	19	41	1.79
41332508--41332545	19	2.0	19	94	0	67	42	13	15	28	1.85
41335096--41335128	17	2.0	17	88	5	50	57	0	0	42	0.98
41335853--41335889	13	2.9	13	88	4	58	29	0	0	70	0.88
41336134--41336182	23	2.1	24	81	11	57	51	2	8	38	1.43
41336247--41336291	3	15.0	3	100	0	90	33	0	0	66	0.92
41341274--41341303	15	2.0	15	93	0	51	60	23	0	16	1.36
41342156--41342185	16	1.9	16	93	6	53	50	20	0	30	1.49
41345255--41345279	11	2.3	11	100	0	50	44	0	24	32	1.54
41348714--41348823	34	3.3	33	81	5	130	40	0	13	45	1.50
41348884--41349151	125	2.1	126	84	3	353	36	15	16	31	1.90
41352213--41352269	25	2.3	23	78	18	62	52	5	0	42	1.24
41352414--41352453	21	1.9	21	89	0	62	15	17	37	30	1.90
41352707--41352742	18	2.0	18	94	0	63	38	8	27	25	1.84
41354492--41354556	30	2.2	30	94	0	112	40	3	29	27	1.71
41361814--41361949	50	2.7	51	80	4	168	25	13	27	33	1.94
41371166--41371198	16	2.1	16	94	0	57	24	24	21	30	1.99
41377471--41377523	22	2.5	20	75	9	52	33	26	0	39	1.57
41381305--41381348	17	2.5	17	85	7	52	63	4	4	27	1.33
41383920--41383979	28	2.1	28	87	0	84	55	5	23	16	1.61
41383887--41384042	83	1.8	85	82	6	201	43	2	30	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41385723--41385773	20	2.5	21	81	6	61	11	27	21	39	1.88
41389487--41389664	40	4.5	39	83	5	180	25	19	27	26	1.99
41389440--41389664	80	2.8	79	80	8	224	25	20	27	26	1.99
41389493--41389662	79	2.1	80	84	5	220	25	20	27	26	1.99
41389520--41389697	79	2.2	80	80	5	193	25	20	28	25	1.99
41397277--41397498	40	5.6	39	79	8	198	25	21	27	26	1.99
41412286--41412442	38	4.1	39	79	13	130	45	11	9	33	1.73
41412296--41412442	39	3.8	39	81	8	151	44	11	8	34	1.72
41418110--41418332	42	5.2	43	88	2	297	30	25	17	26	1.98
41418110--41418332	85	2.6	86	85	2	279	30	25	17	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208