genome.fa.s18.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  179  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56536530--56536565	15	2.4	16	90	9	58	25	0	2	72	0.98
56536807--56536963	54	2.9	54	97	0	289	38	17	15	28	1.90
56536722--56537261	200	2.7	199	91	4	839	37	17	15	29	1.91
56537002--56537171	54	3.0	54	92	5	259	37	17	15	30	1.90
56537150--56537184	14	2.5	14	90	0	52	60	2	17	20	1.49
56537249--56537281	13	2.4	14	95	5	59	69	9	9	12	1.36
56537242--56537289	14	3.5	14	85	5	62	62	8	10	18	1.52
56537277--56537441	87	1.9	87	83	7	219	34	18	20	26	1.96
56537360--56537737	73	5.2	73	91	3	597	35	17	16	30	1.93
56537364--56537737	72	5.2	72	91	3	585	34	17	16	30	1.93
56537364--56537737	145	2.6	145	91	3	612	34	17	16	30	1.93
56537612--56538271	145	5.0	127	79	11	462	36	17	15	30	1.91
56537737--56538149	72	5.8	72	91	2	620	35	18	15	30	1.91
56537751--56538149	145	2.8	144	92	3	646	35	17	15	31	1.91
56538149--56538845	72	9.7	72	94	2	1179	34	18	16	31	1.93
56538149--56539545	217	6.2	216	79	12	1509	34	18	16	31	1.93
56538724--56538967	122	2.0	125	87	4	361	36	18	14	30	1.90
56538849--56539545	72	9.7	72	93	2	1118	33	18	15	31	1.93
56537481--56539667	700	3.2	699	94	2	3692	34	18	15	31	1.93
56539941--56542742	934	3.0	933	99	0	5545	24	22	17	35	1.95
56554943--56555036	9	10.4	9	85	4	100	25	7	24	42	1.80
56554951--56555036	27	3.2	27	88	0	127	24	8	24	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56555485--56555540	27	2.1	27	93	6	96	41	7	21	30	1.80
56568412--56568507	42	2.3	42	94	0	174	37	11	19	31	1.88
56569651--56569947	147	2.0	147	93	0	504	49	14	15	20	1.79
56571288--56571711	153	2.8	154	84	5	592	31	9	7	51	1.62
56572060--56572173	59	1.9	59	100	0	228	36	5	11	46	1.63
56573166--56573215	24	2.0	24	85	14	66	48	0	10	42	1.37
56577886--56577952	31	2.3	27	73	14	62	37	11	11	38	1.79
56578825--56578871	21	2.2	21	81	7	60	42	0	2	55	1.12
56582021--56582055	11	3.3	11	92	4	54	60	0	0	40	0.97
56582037--56582105	19	3.8	18	81	12	79	59	0	1	39	1.06
56582046--56582098	17	3.0	17	86	5	70	58	0	1	39	1.09
56582021--56582111	19	4.8	20	77	10	77	59	0	1	39	1.05
56582116--56582203	29	3.0	29	93	0	149	59	3	5	31	1.38
56582494--56582543	18	2.7	19	81	12	59	42	0	2	56	1.11
56584489--56584525	18	2.1	18	94	0	65	16	16	18	48	1.81
56587392--56587437	23	2.0	23	83	4	58	21	6	13	58	1.57
56593795--56593864	20	3.5	20	82	9	88	62	0	2	34	1.10
56617897--56617942	3	15.0	3	82	13	58	0	36	0	63	0.95
56617911--56617939	10	2.9	10	100	0	58	0	37	0	62	0.96
56617897--56617942	13	3.7	13	81	18	62	0	36	0	63	0.95
56617998--56618047	10	5.2	10	80	7	59	0	30	0	70	0.88
56618002--56618044	19	2.3	19	88	11	63	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56618292--56618408	30	3.9	29	77	11	94	44	3	21	30	1.69
56618307--56618408	30	3.4	30	83	2	125	44	3	21	30	1.70
56618681--56618930	50	4.7	52	87	7	321	36	17	15	31	1.91
56618681--56618930	53	4.7	54	87	6	359	36	17	15	31	1.91
56618941--56618973	13	2.4	14	95	5	59	69	9	9	12	1.36
56618934--56618981	14	3.5	14	85	5	62	62	8	10	18	1.52
56619057--56620079	145	7.1	144	95	1	1692	33	18	17	30	1.94
56619053--56620083	217	4.7	216	95	1	1717	33	18	17	30	1.94
56619057--56620079	362	2.8	362	95	1	1784	33	18	17	30	1.94
56628364--56628771	17	23.3	17	70	15	181	44	10	12	33	1.75
56628383--56628434	16	3.2	16	86	2	68	48	11	13	26	1.77
56628553--56628632	21	4.0	21	82	9	89	43	10	7	38	1.66
56628536--56628771	35	6.7	32	72	16	114	44	9	12	32	1.75
56628732--56628805	37	2.0	37	86	0	103	43	10	12	33	1.77
56628756--56628804	18	2.6	19	77	6	55	48	14	12	24	1.77
56628800--56628850	18	2.9	17	77	8	57	47	7	9	35	1.66
56629333--56629388	26	2.2	26	90	3	87	7	30	41	21	1.80
56629495--56629538	19	2.3	19	84	4	52	4	13	11	70	1.31
56629495--56629548	22	2.6	21	82	11	58	3	12	12	70	1.30
56629504--56629551	21	2.4	19	83	13	60	2	8	12	77	1.08
56630100--56630216	30	3.9	29	77	11	94	44	3	22	29	1.69
56630115--56630216	30	3.4	30	84	2	134	44	3	22	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56630212--56630246	14	2.4	15	90	4	54	28	0	2	68	1.04
56639432--56639659	125	1.8	124	88	4	352	29	14	24	31	1.94
56642865--56642899	17	2.0	18	88	5	54	31	0	20	48	1.50
56642906--56643004	34	3.1	34	85	7	118	34	0	18	47	1.49
56643032--56643066	17	2.0	18	88	5	54	31	0	20	48	1.50
56642911--56644303	133	10.4	133	95	2	2379	30	0	22	46	1.54
56643165--56643199	17	2.0	18	88	5	54	31	0	20	48	1.50
56643431--56643465	17	2.0	18	88	5	54	31	0	20	48	1.50
56643564--56643598	17	2.0	18	88	5	54	31	0	20	48	1.50
56642883--56644356	29	54.6	29	66	23	429	30	0	22	46	1.54
56643697--56643731	17	2.0	18	88	5	54	31	0	20	48	1.50
56643830--56643864	17	2.0	18	88	5	54	31	0	20	48	1.50
56643793--56644150	47	7.0	47	71	23	203	31	0	22	46	1.52
56643963--56643997	17	2.0	18	88	5	54	31	0	20	48	1.50
56644096--56644129	16	2.1	17	88	5	52	32	0	20	47	1.51
56644059--56644150	45	2.0	47	95	4	170	30	0	21	47	1.51
56644057--56644385	28	12.7	23	71	22	148	29	0	23	46	1.55
56644126--56644316	28	6.6	30	81	11	195	29	0	23	47	1.56
56644226--56644269	22	2.0	22	90	0	70	36	0	18	45	1.49
56644339--56644373	17	2.0	18	88	5	54	31	0	20	48	1.50
56644864--56644909	18	2.6	18	82	0	56	39	8	30	21	1.84
56646754--56646795	22	1.9	22	90	0	66	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56646745--56646847	52	2.0	51	83	9	129	34	0	32	33	1.58
56646797--56646886	22	4.1	23	78	8	98	43	0	26	30	1.55
56654882--56655110	105	2.2	105	80	3	246	29	26	14	29	1.95
56656818--56656872	21	2.6	21	88	0	74	27	7	34	30	1.84
56657368--56657496	68	1.9	68	95	0	231	30	35	9	24	1.87
56658168--56658206	13	3.0	13	85	10	53	41	0	0	58	0.98
56660238--56660308	37	1.9	36	83	8	90	42	0	7	50	1.29
56662375--56662603	105	2.2	105	82	1	262	29	26	14	29	1.95
56667220--56667350	39	3.4	39	92	3	219	63	0	3	33	1.10
56667220--56667360	40	3.5	40	90	2	214	60	0	2	36	1.11
56669217--56669246	13	2.3	13	100	0	60	33	6	23	36	1.81
56673179--56673377	36	5.3	36	82	12	238	37	13	20	29	1.90
56673143--56673333	82	2.3	82	95	0	337	37	12	21	29	1.89
56674229--56674884	51	12.9	51	76	6	593	29	25	14	30	1.95
56674230--56674884	102	6.4	102	92	1	1012	29	25	14	30	1.95
56677405--56677531	49	2.6	49	81	4	152	33	25	14	26	1.95
56679653--56680410	51	14.9	51	75	6	666	29	25	14	30	1.95
56679654--56680410	102	7.4	102	93	1	1207	29	25	14	30	1.95
56680517--56680541	11	2.3	11	100	0	50	8	16	0	76	1.02
56683166--56683194	6	4.8	6	100	0	58	68	0	31	0	0.89
56684268--56684376	23	5.0	23	76	8	102	22	18	21	38	1.93
56684297--56684376	21	3.8	21	80	5	81	20	20	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56684780--56684816	19	1.9	19	88	0	56	51	2	18	27	1.60
56690185--56690225	21	2.0	21	90	0	64	29	21	29	19	1.98
56695442--56695702	105	2.5	105	91	0	396	28	27	13	30	1.94
56695461--56695784	105	3.1	105	84	0	335	29	26	14	29	1.95
56696885--56696920	18	2.0	18	100	0	72	50	0	5	44	1.25
56699555--56699586	14	2.3	14	94	0	55	40	0	0	59	0.97
56701658--56701682	11	2.3	11	100	0	50	32	0	0	68	0.90
56707074--56707302	105	2.2	105	84	1	280	28	26	15	29	1.96
56708544--56708584	21	2.0	21	85	9	57	46	2	4	46	1.37
56710604--56710642	3	13.0	3	88	0	60	64	2	2	30	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208