genome.fa.s18.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  39  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15149419--15149467	22	2.2	22	78	7	55	30	4	2	63	1.24
15152618--15152664	3	15.7	3	100	0	94	0	31	0	68	0.90
15157881--15158141	129	2.0	129	94	1	461	33	14	24	26	1.95
15158626--15158659	14	2.4	14	95	0	59	38	5	23	32	1.79
15158647--15158686	20	2.0	20	90	0	62	30	10	12	47	1.74
15158633--15158698	34	1.9	35	90	3	107	33	7	15	43	1.74
15158798--15158914	40	3.1	39	65	22	106	31	4	5	58	1.42
15158772--15158914	72	2.0	71	95	1	259	32	4	6	56	1.44
15161246--15161270	13	1.9	13	100	0	50	40	16	28	16	1.89
15162883--15162949	22	3.0	22	91	4	116	20	22	26	29	1.99
15162882--15162948	23	3.0	23	93	2	118	19	22	26	31	1.98
15186116--15186364	50	4.8	50	85	4	284	20	29	24	26	1.99
15186115--15186364	100	2.4	104	88	6	357	20	29	24	26	1.99
15186459--15186490	13	2.5	13	94	0	55	56	12	0	31	1.37
15186702--15186759	30	1.9	30	89	0	89	31	24	3	41	1.71
15187586--15187627	21	2.0	21	90	0	66	35	0	21	42	1.53
15188181--15188285	24	4.3	24	74	17	85	20	24	20	34	1.96
15188199--15188339	25	5.7	25	70	6	92	19	25	22	31	1.98
15189471--15189517	23	2.0	25	87	8	71	29	2	14	53	1.53
15190942--15190995	22	2.5	20	74	11	54	33	5	5	55	1.46
15194443--15194490	24	2.0	24	95	0	87	35	8	18	37	1.81
15197866--15197906	22	1.9	21	85	5	55	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15228148--15228292	75	1.9	75	95	0	263	43	8	8	40	1.65
15230237--15230315	20	3.8	20	76	23	76	29	1	1	68	1.05
15238999--15239267	46	5.6	46	82	11	290	35	14	22	27	1.93
15238999--15239267	98	2.7	98	91	0	439	35	14	22	27	1.93
15239231--15239376	37	4.0	37	93	1	242	36	16	21	24	1.94
15249448--15249593	66	2.2	66	88	0	211	36	15	19	27	1.93
15249448--15249593	33	4.4	32	70	5	103	36	15	19	27	1.93
15249482--15249612	66	2.0	66	83	1	163	36	18	22	22	1.95
15251524--15251564	21	1.9	22	85	5	57	24	0	26	48	1.51
15256621--15256654	17	1.9	18	94	5	61	73	2	11	11	1.20
15260303--15260466	44	3.6	44	85	11	229	31	24	14	29	1.95
15260347--15260459	51	2.2	51	95	0	199	30	25	13	30	1.94
15263280--15263688	46	9.6	45	79	16	462	28	20	15	35	1.93
15263416--15263652	36	6.0	36	77	18	240	27	19	15	37	1.92
15263370--15263688	82	3.9	82	93	0	557	28	20	14	36	1.92
15263279--15263688	128	3.2	134	77	17	444	28	20	15	35	1.93
15266790--15266830	14	2.9	15	85	7	50	43	0	0	56	0.99
15266791--15266842	20	2.5	20	81	12	61	44	0	0	55	0.99
15266800--15266842	23	1.9	22	85	4	59	44	0	0	55	0.99
15266790--15266839	17	3.3	15	83	8	57	44	0	0	56	0.99
15272298--15272327	14	2.2	14	94	5	53	23	0	0	76	0.78
15272296--15272335	20	2.0	20	85	0	53	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15275611--15275684	24	3.2	24	69	18	75	35	4	31	29	1.76
15275609--15275747	46	3.0	46	91	1	217	35	6	27	30	1.82
15275635--15275708	21	3.3	21	67	20	60	40	5	27	27	1.78
15278429--15278499	37	1.9	37	94	0	124	43	5	1	49	1.35
15278865--15278923	30	2.0	31	86	6	86	57	11	3	27	1.50
15280477--15280622	46	3.2	46	96	0	265	28	27	8	34	1.87
15287112--15287148	17	2.2	17	95	0	65	24	2	21	51	1.61
15287901--15287994	46	2.0	46	91	4	154	31	9	28	29	1.89
15300001--15300047	23	2.0	23	100	0	94	31	4	8	55	1.49
15300008--15300054	23	2.2	22	81	11	53	29	8	10	51	1.66
15302391--15302421	2	15.5	2	100	0	62	51	0	48	0	1.00
15303090--15303135	24	1.9	24	86	0	65	34	10	4	50	1.57
15315256--15315289	3	11.3	3	100	0	68	67	0	0	32	0.91
15319004--15319029	3	8.7	3	100	0	52	30	34	0	34	1.58
15323613--15323658	17	2.7	17	83	6	58	47	0	6	45	1.28
15324230--15324260	15	2.1	15	93	0	53	29	12	6	51	1.65
15324519--15324564	21	2.2	21	88	0	65	41	0	0	58	0.98
15325220--15325246	12	2.2	12	100	0	54	14	22	25	37	1.93
15328758--15328826	33	2.1	33	100	0	138	37	14	27	20	1.91
15329183--15329311	11	12.5	10	76	17	63	38	3	0	58	1.14
15329164--15329263	40	2.5	39	85	7	130	36	2	0	62	1.07
15329165--15329337	50	3.4	50	78	15	183	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329206--15329303	10	10.0	9	77	16	65	37	1	0	61	1.03
15329295--15329356	32	1.9	32	83	0	79	32	1	3	62	1.20
15330855--15330884	12	2.5	12	94	0	51	46	0	6	46	1.29
15330966--15331012	16	2.7	17	80	9	51	63	4	0	31	1.13
15330969--15331017	17	2.7	19	78	15	59	61	8	0	30	1.25
15331230--15331314	3	29.3	3	74	19	67	67	1	2	29	1.11
15331642--15331733	21	4.2	22	74	15	75	57	31	1	9	1.38
15331799--15331898	38	2.6	38	93	0	173	20	12	49	19	1.79
15332409--15332476	29	2.3	29	75	5	75	23	7	1	67	1.24
15332773--15332811	20	2.0	20	89	0	60	58	2	2	35	1.25
15333347--15333384	18	2.1	18	85	9	51	26	0	2	71	1.00
15347997--15348072	37	2.1	37	80	9	84	67	0	0	32	0.91
15354278--15354594	125	2.5	125	94	0	553	30	19	21	28	1.98
15357593--15357723	16	7.3	18	64	25	55	39	3	8	48	1.52
15357602--15357723	53	2.3	53	97	0	226	40	4	7	47	1.50
15357767--15357798	16	2.1	15	94	5	55	37	0	6	56	1.25
15357895--15358055	21	7.5	21	87	4	241	23	0	29	46	1.53
15357895--15358055	43	3.8	42	89	4	241	23	0	29	46	1.53
15358069--15358093	12	2.1	12	100	0	50	60	0	0	40	0.97
15358325--15358364	21	1.9	21	85	10	55	10	20	35	35	1.86
15360471--15360527	29	2.0	28	82	3	69	49	1	21	28	1.59
15361656--15361712	29	1.9	30	89	3	89	38	0	42	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15367555--15367602	22	2.2	22	85	10	64	27	8	0	64	1.22
15368401--15368437	17	2.2	17	95	0	65	24	2	21	51	1.61
15369175--15369360	46	4.0	46	91	0	264	35	6	26	31	1.83
15372024--15372228	43	4.6	44	88	7	308	34	15	21	28	1.94
15372024--15372228	89	2.3	89	93	3	344	34	15	21	28	1.94
15376583--15376740	46	3.5	46	93	2	259	28	23	13	34	1.92
15389652--15389692	21	2.0	21	85	0	55	24	9	19	46	1.80
15402831--15402877	25	2.0	23	87	8	67	57	2	0	40	1.11
15402930--15402981	23	2.2	24	80	6	63	44	3	3	48	1.39
15407360--15407397	19	2.0	20	84	5	51	26	0	10	63	1.27
15418931--15418986	20	2.6	21	80	13	69	50	0	10	39	1.37
15421547--15421610	32	2.0	32	96	0	119	29	34	14	21	1.93
15421716--15421824	57	1.9	57	87	7	159	25	26	18	29	1.98
15423610--15423668	30	1.9	30	86	3	82	28	25	1	44	1.64
15423610--15423678	30	2.3	31	82	7	79	28	23	4	43	1.73
15424724--15424790	5	13.6	5	75	20	61	35	0	4	59	1.18
15424720--15424792	19	3.9	19	78	19	75	36	0	4	58	1.17
15424797--15424842	14	3.1	14	84	6	56	73	4	17	4	1.15
15424805--15424862	25	2.3	25	77	16	66	67	5	24	3	1.27
15425112--15425143	13	2.5	13	94	0	55	31	0	12	56	1.37
15425238--15425479	50	4.7	50	86	4	297	26	24	29	19	1.99
15425238--15425487	100	2.4	103	88	6	364	26	24	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15427929--15427956	13	2.2	13	100	0	56	21	7	25	46	1.76
15429840--15429905	5	12.6	5	76	17	55	37	0	4	57	1.19
15429840--15429907	17	3.9	17	76	16	68	38	0	4	57	1.19
15429835--15429903	24	2.8	24	78	8	77	39	0	4	56	1.19
15429867--15429907	19	2.3	19	91	8	68	41	0	0	58	0.98
15430227--15430258	13	2.5	13	94	0	55	31	0	12	56	1.37
15430353--15430594	50	4.7	50	86	4	297	26	24	29	19	1.99
15430353--15430602	100	2.4	103	88	6	364	26	24	29	20	1.99
15432608--15432712	31	3.4	31	68	21	92	42	14	11	31	1.81
15432591--15432685	32	3.0	33	66	25	85	43	16	8	31	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208