genome.fa.s18.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  204  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62853439--62853480	15	2.7	15	82	17	50	35	4	2	57	1.33
62855685--62855729	18	2.4	18	85	3	54	11	11	8	68	1.39
62856661--62856686	5	5.2	5	100	0	52	80	0	0	19	0.71
62860631--62860787	78	2.0	78	97	0	296	36	11	10	42	1.75
62873909--62873951	10	4.4	10	79	5	52	34	0	0	65	0.93
62875841--62875867	3	9.0	3	100	0	54	66	0	0	33	0.92
62877051--62877089	19	2.0	20	85	9	55	51	15	5	28	1.64
62882984--62883013	15	1.9	16	93	6	53	43	0	3	53	1.17
62891866--62892014	78	1.9	79	79	6	169	34	7	24	33	1.83
62892772--62892825	10	5.6	10	72	24	53	35	1	0	62	1.06
62892732--62892827	50	1.9	49	85	8	131	35	2	0	62	1.07
62892760--62892804	16	2.9	16	83	6	58	35	2	0	62	1.08
62892738--62892827	40	2.2	42	82	13	125	37	2	0	60	1.09
62904607--62904667	25	2.4	25	83	0	77	29	16	22	31	1.96
62904687--62904735	25	2.0	25	87	0	71	36	14	16	32	1.89
62906519--62906634	29	3.9	28	69	15	74	41	4	3	50	1.39
62906511--62906631	58	2.1	58	85	3	163	42	4	3	49	1.38
62907063--62907203	23	6.1	23	79	0	138	34	16	20	29	1.94
62907064--62907200	46	3.0	46	82	0	157	35	16	18	29	1.93
62907636--62907713	35	2.2	35	79	4	86	29	29	23	17	1.97
62907807--62907896	27	3.3	27	82	0	108	41	16	25	16	1.89
62910226--62910279	20	2.8	20	83	5	67	50	29	1	18	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62911587--62911619	16	2.0	17	88	5	50	6	0	84	9	0.76
62920496--62920548	20	2.8	19	77	5	54	49	9	0	41	1.35
62923524--62923584	32	1.9	32	100	0	122	40	27	6	24	1.80
62935565--62935699	72	1.9	73	79	4	157	16	40	5	38	1.71
62943234--62943263	2	15.5	2	93	6	53	50	0	0	50	1.00
62948548--62948581	10	3.4	10	100	0	68	64	0	17	17	1.29
62949681--62949743	32	2.0	32	87	6	92	28	20	38	12	1.89
62952430--62952549	64	1.9	64	100	0	240	45	10	3	41	1.54
62959205--62959267	32	2.0	32	90	6	101	28	19	39	12	1.88
62961958--62962077	64	1.9	64	100	0	240	45	10	3	41	1.54
62967551--62967576	2	13.0	2	100	0	52	50	0	0	50	1.00
62968728--62968790	32	2.0	32	90	6	101	28	19	39	12	1.88
62971479--62971598	64	1.9	64	100	0	240	45	10	3	41	1.54
62978287--62978595	153	2.0	155	91	3	496	42	14	10	32	1.80
62979592--62979633	18	2.2	20	83	8	52	66	7	0	26	1.17
62981064--62981106	21	2.1	21	91	4	70	62	0	2	34	1.08
62981946--62981974	14	2.1	14	100	0	58	62	6	0	31	1.22
62983363--62983409	25	1.9	25	83	12	62	53	8	8	29	1.61
62984489--62984553	9	7.1	9	72	20	55	53	3	1	41	1.25
62984490--62984559	37	1.9	36	88	8	106	57	2	1	38	1.23
62987299--62987360	30	2.1	29	84	3	79	37	12	11	38	1.80
62987428--62987647	72	3.0	72	79	11	232	32	4	7	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62987500--62987548	20	2.4	21	83	13	66	34	4	0	61	1.15
62990476--62990509	15	2.3	15	94	0	59	32	20	0	47	1.51
63023576--63023855	138	2.0	137	97	0	497	48	6	8	36	1.60
63028104--63028246	72	2.0	72	87	0	205	37	18	26	17	1.93
63030713--63030898	73	2.5	73	95	0	345	39	25	6	28	1.80
63030899--63030945	3	15.7	3	100	0	94	68	0	0	31	0.90
63035162--63035347	73	2.5	73	95	0	345	39	25	6	28	1.80
63035348--63035376	3	9.7	3	100	0	58	68	0	0	31	0.89
63042549--63042648	51	2.0	50	90	2	155	34	14	12	40	1.82
63049446--63049503	30	2.0	28	83	12	73	41	18	3	36	1.68
63051289--63051313	3	8.3	3	100	0	50	0	32	0	68	0.90
63052372--63052432	23	2.7	23	89	5	97	22	24	13	39	1.90
63053636--63053672	18	2.1	17	90	5	56	29	0	0	70	0.88
63053636--63053672	17	2.1	18	85	14	51	29	0	0	70	0.88
63055689--63055726	20	1.9	20	88	0	58	18	2	2	76	1.02
63055690--63055765	34	2.3	33	88	8	111	14	7	2	75	1.14
63062315--63062366	24	2.2	24	89	0	77	42	11	30	15	1.82
63072565--63072595	5	6.0	5	96	3	53	41	0	0	58	0.98
63076332--63076359	9	3.1	9	100	0	56	32	10	10	46	1.73
63080503--63080557	25	2.2	24	80	6	65	9	10	3	76	1.13
63081064--63081090	10	2.7	10	100	0	54	29	0	0	70	0.88
63081113--63081170	27	2.1	27	80	0	62	36	10	1	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63082939--63082969	16	1.9	16	93	0	53	25	19	22	32	1.97
63085324--63085365	20	2.0	21	82	13	52	14	19	4	61	1.49
63087608--63087853	92	2.7	90	90	3	388	30	19	24	26	1.98
63087841--63088885	89	11.7	89	90	2	1516	30	18	23	26	1.98
63087841--63088885	270	3.9	267	89	2	1563	30	18	23	26	1.98
63087841--63088885	181	5.8	180	92	0	1582	30	18	23	26	1.98
63089437--63089477	21	1.9	22	85	5	57	7	17	2	73	1.17
63090204--63090269	3	21.3	3	73	17	55	33	0	1	65	1.02
63090227--63090269	10	4.5	10	80	11	54	30	0	2	67	1.03
63090204--63090259	14	3.9	15	72	13	55	33	0	0	66	0.92
63090205--63090266	18	3.0	20	77	15	65	33	0	1	64	1.03
63101223--63101261	19	2.1	18	85	4	51	46	2	2	48	1.29
63101368--63101402	17	2.0	18	94	5	63	57	0	5	37	1.23
63105320--63105529	109	1.9	110	84	0	278	38	17	12	31	1.87
63110572--63110601	4	7.8	4	92	7	53	76	0	0	23	0.78
63110859--63110892	16	2.2	16	94	5	61	38	2	11	47	1.55
63111782--63111821	6	6.8	6	85	5	55	85	5	0	10	0.75
63111789--63111821	17	1.9	17	93	0	57	84	6	0	9	0.76
63112092--63112128	20	2.0	20	89	10	60	5	13	21	59	1.54
63112565--63112928	119	2.9	121	88	5	516	28	24	17	28	1.98
63112820--63112977	44	3.6	46	70	17	136	30	22	18	28	1.97
63112776--63113013	88	2.7	88	87	3	282	28	24	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63112686--63112928	132	1.8	132	93	0	423	28	24	18	28	1.98
63113185--63114239	89	11.9	89	87	2	1280	22	22	25	29	1.99
63116419--63116484	25	2.5	24	83	11	69	50	7	13	28	1.69
63117884--63117923	19	2.1	19	100	0	80	60	10	10	20	1.57
63118485--63118701	106	2.0	104	84	6	285	34	18	16	30	1.93
63119505--63119548	2	22.0	2	80	0	52	52	0	4	43	1.22
63119500--63119568	10	7.3	10	74	12	56	53	0	7	39	1.29
63119505--63119543	18	2.2	18	95	0	69	53	0	2	43	1.14
63134001--63134079	30	2.7	30	84	2	97	8	22	27	40	1.84
63134336--63134369	17	1.9	18	94	5	61	0	29	38	32	1.58
63141495--63141543	14	3.5	14	80	0	62	48	0	12	38	1.41
63141657--63141697	21	2.0	21	85	0	55	31	4	4	58	1.40
63142599--63142681	36	2.3	36	81	4	96	34	25	9	30	1.88
63148061--63148323	72	3.7	71	91	1	418	27	20	21	30	1.98
63150157--63150290	56	2.4	57	93	1	225	39	21	9	29	1.85
63154884--63154935	23	2.3	23	90	6	79	34	13	9	42	1.77
63156549--63156605	3	19.3	3	84	10	73	28	3	1	66	1.18
63157144--63157206	25	2.7	25	83	13	73	22	4	6	66	1.33
63157333--63157850	108	4.8	108	94	1	844	30	14	19	35	1.92
63157358--63157850	214	2.3	217	93	1	841	30	15	19	35	1.92
63162947--63163166	72	3.1	72	91	2	327	27	20	21	30	1.98
63164939--63165011	35	2.1	35	100	0	146	27	13	12	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63165379--63165546	81	2.1	82	97	1	320	40	22	8	28	1.84
63166149--63166178	3	10.0	3	100	0	60	33	0	0	66	0.92
63167107--63167226	50	2.4	50	86	6	181	38	20	10	30	1.86
63170299--63170381	22	3.8	22	64	20	57	27	3	27	40	1.73
63170644--63170691	21	2.3	20	83	13	62	33	0	8	58	1.28
63170656--63170755	37	2.7	37	77	13	98	42	1	6	51	1.33
63173583--63173676	23	4.1	23	85	0	134	47	4	25	22	1.69
63178087--63178180	23	4.1	23	85	0	134	47	4	25	22	1.69
63181474--63181608	56	2.4	55	90	1	207	40	20	11	28	1.86
63197889--63198109	72	3.1	72	95	0	406	27	19	23	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208