genome.fa.s18.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  46  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17778092--17778134	6	7.2	6	97	0	59	16	41	32	9	1.80
17788290--17788333	17	2.6	18	82	10	56	65	0	0	34	0.93
17789363--17789447	34	2.5	33	79	5	91	43	9	8	38	1.67
17792370--17792396	12	2.2	12	100	0	54	14	18	7	59	1.58
17793548--17793598	15	3.4	14	82	15	57	52	1	29	15	1.54
17801233--17801274	20	2.2	20	86	4	59	64	9	4	21	1.42
17811439--17811473	15	2.2	16	90	5	54	60	0	14	25	1.35
17820482--17820532	21	2.5	20	84	6	68	54	29	0	15	1.41
17820481--17820532	20	2.6	20	85	8	70	53	30	0	15	1.42
17825249--17825311	32	2.0	32	100	0	126	19	6	41	33	1.76
17838246--17838393	74	2.0	74	87	0	215	35	6	18	39	1.76
17847553--17847596	23	1.9	23	90	0	70	38	4	6	50	1.50
17849673--17849802	43	3.0	42	78	14	124	23	19	28	29	1.98
17851626--17851744	61	1.9	61	88	5	177	38	1	7	52	1.40
17855051--17855075	6	4.2	6	100	0	50	64	20	16	0	1.30
17855760--17856141	188	2.0	188	100	0	764	32	21	21	23	1.98
17861941--17861985	21	2.1	21	95	0	81	20	37	13	28	1.90
17861898--17862030	66	2.0	66	86	0	185	24	32	18	25	1.97
17861968--17862130	45	3.6	45	85	3	220	25	27	22	25	2.00
17887317--17887355	14	2.8	14	96	0	69	51	0	15	33	1.44
17889195--17889235	21	2.0	21	85	0	55	31	21	26	19	1.97
17907136--17907175	6	6.7	6	100	0	80	35	0	15	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17923223--17923247	6	4.2	6	100	0	50	0	16	32	52	1.44
17930302--17930440	46	3.0	46	86	4	208	29	23	11	35	1.90
17934302--17934458	46	3.3	46	86	10	149	35	14	22	28	1.92
17934250--17934458	52	4.1	51	85	9	284	34	13	22	28	1.93
17934236--17934459	98	2.3	98	94	0	394	34	14	23	28	1.93
17934421--17934567	37	4.0	37	91	1	226	36	14	22	25	1.93
17935821--17936023	49	3.8	57	86	11	231	23	13	30	33	1.93
17939213--17939369	46	3.3	46	86	10	149	35	14	22	28	1.92
17939161--17939369	52	4.1	51	85	9	284	34	13	22	28	1.93
17939147--17939370	98	2.3	98	94	0	394	34	14	23	28	1.93
17939332--17939478	37	4.0	37	91	1	226	36	14	22	25	1.93
17943679--17943817	46	3.0	45	83	8	163	30	24	9	35	1.87
17953779--17953820	3	14.0	3	100	0	84	66	0	0	33	0.92
17961535--17961571	7	5.4	7	96	3	67	59	16	13	10	1.61
17964433--17964477	18	2.5	18	85	0	54	44	11	0	44	1.39
17968191--17968385	105	1.9	105	83	2	257	32	16	24	26	1.96
17969722--17969754	14	2.4	14	94	0	57	69	6	0	24	1.10
17983273--17983316	6	7.3	6	100	0	88	31	52	0	15	1.44
17996653--17996712	31	1.9	32	86	3	86	45	1	0	53	1.10
18007516--18007578	28	2.2	30	80	11	78	50	0	6	42	1.27
18008537--18008581	18	2.6	18	85	3	56	24	0	11	64	1.26
18020100--18020189	44	2.0	44	100	0	180	42	15	11	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18031564--18031651	42	2.1	42	86	0	122	31	23	27	17	1.97
18034133--18034211	26	3.0	27	76	14	101	15	15	7	62	1.54
18034136--18034221	26	3.3	26	78	12	95	13	13	8	63	1.50
18049380--18049435	28	2.0	29	82	3	69	53	1	1	42	1.21
18050197--18050241	3	15.0	3	100	0	90	33	0	0	66	0.92
18050393--18050451	27	2.3	27	83	11	72	38	0	30	30	1.57
18060770--18060821	24	2.2	24	89	0	77	55	9	1	32	1.43
18062738--18062789	24	2.2	24	89	0	77	55	9	1	32	1.43
18065063--18065088	13	2.0	13	100	0	52	46	15	15	23	1.83
18068614--18068695	27	2.9	28	77	10	87	64	2	1	31	1.14
18072303--18072476	9	18.9	9	71	15	79	58	7	0	33	1.31
18076219--18076247	7	4.1	7	100	0	58	27	0	58	13	1.36
18078339--18078403	27	2.4	27	86	0	85	23	30	32	13	1.93
18078482--18078519	10	3.7	10	89	3	58	71	0	28	0	0.87
18080752--18081528	157	4.9	154	79	10	869	31	10	6	50	1.63
18080740--18081528	314	2.5	315	93	1	1341	31	10	6	50	1.63
18081803--18081877	10	7.5	10	73	15	66	0	30	0	69	0.89
18081778--18081888	38	2.8	38	83	13	138	0	29	0	69	0.95
18081810--18081879	4	17.5	4	74	21	58	0	28	0	71	0.86
18081794--18081888	38	2.4	38	89	7	145	0	32	0	67	0.91
18081803--18081887	10	9.1	9	78	17	59	0	31	0	68	0.90
18082382--18082440	22	2.6	22	86	7	75	35	6	1	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18087225--18087499	46	6.0	46	91	1	412	36	9	25	28	1.87
18087853--18087907	3	18.3	3	100	0	110	32	0	0	67	0.91
18088024--18088048	13	1.9	13	100	0	50	32	0	4	64	1.12
18088020--18088050	14	2.1	14	94	5	53	32	0	6	61	1.21
18088051--18088088	18	2.1	19	90	5	60	39	10	0	50	1.37
18088065--18088114	26	1.9	26	83	0	64	36	14	0	50	1.43
18090614--18090667	23	2.4	23	82	11	60	59	7	1	31	1.36
18090617--18090687	3	23.3	3	74	8	63	61	5	1	30	1.27
18091153--18091189	11	3.2	12	88	11	60	45	0	54	0	1.00
18092184--18092279	40	2.4	40	80	3	104	37	9	11	41	1.74
18092220--18092279	20	3.1	19	76	9	66	35	10	11	43	1.75
18097884--18097929	6	7.3	6	82	7	56	50	15	17	17	1.79
18097912--18098018	46	2.4	45	85	4	144	42	17	17	21	1.89
18100565--18100614	20	2.5	19	80	6	55	38	20	6	36	1.77
18101925--18101989	7	9.3	7	76	6	69	47	33	0	18	1.49
18101925--18101989	14	4.6	14	83	16	82	47	33	0	18	1.49
18102133--18102197	32	2.1	31	97	2	121	36	15	12	35	1.85
18103109--18103201	22	4.1	22	81	10	107	40	18	25	15	1.89
18103103--18103212	47	2.3	47	87	6	152	40	18	25	16	1.91
18103103--18103212	22	4.6	24	78	15	104	40	18	25	16	1.91
18104272--18104357	5	17.0	5	77	17	81	56	2	1	39	1.19
18104275--18104322	21	2.3	22	85	10	73	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18104277--18104316	8	4.8	8	82	11	53	60	0	0	40	0.97
18105005--18105114	11	10.4	11	72	22	58	60	0	3	36	1.15
18105038--18105103	31	2.1	30	83	10	80	62	0	3	34	1.11
18104978--18105123	42	3.5	42	89	3	222	61	0	2	35	1.10
18105336--18105392	19	2.9	20	92	2	89	40	1	0	57	1.09
18105335--18105399	20	3.3	20	84	2	87	40	1	0	58	1.07
18111343--18111512	59	2.9	59	98	0	322	44	9	5	40	1.59
18111513--18111575	23	2.7	23	82	7	74	46	3	1	49	1.27
18112497--18112535	18	2.1	18	85	4	51	71	7	10	10	1.30
18112688--18112785	48	2.0	48	100	0	196	36	10	22	30	1.87
18120580--18120658	29	2.6	31	82	8	108	43	10	0	46	1.37
18120579--18120676	29	3.3	29	79	4	106	40	8	0	51	1.32
18120686--18120720	12	2.9	12	86	0	52	40	11	2	45	1.55
18120783--18120817	10	3.5	10	100	0	70	48	8	0	42	1.33
18120747--18120827	20	4.1	20	73	12	69	37	8	0	54	1.31
18120825--18120883	20	3.1	19	75	18	59	22	5	0	72	1.03
18120900--18120944	23	1.9	23	81	4	54	17	4	15	62	1.49
18121194--18121337	73	2.0	73	95	0	261	26	18	19	35	1.95
18122232--18123769	766	2.0	766	99	0	3022	29	21	20	28	1.98
18124184--18124221	10	3.8	10	82	10	51	10	0	2	86	0.66
18124185--18124233	8	6.0	8	81	13	55	12	0	2	85	0.68
18124185--18124236	6	8.2	6	81	10	50	13	0	1	84	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18125546--18125611	7	10.0	7	80	12	52	75	3	1	19	1.01
18126161--18126195	15	2.4	15	90	4	54	48	0	8	42	1.33
18130698--18130752	5	11.2	5	86	11	78	38	0	0	61	0.96
18140570--18140621	24	2.2	24	85	0	68	51	7	3	36	1.49
18141738--18141842	51	2.1	51	94	0	183	38	17	12	32	1.87
18147049--18147082	2	17.5	2	93	6	61	50	0	50	0	1.00
18163537--18163658	61	2.0	61	100	0	244	34	21	16	27	1.95
18167068--18167131	33	2.0	32	90	3	101	39	25	9	26	1.86
18178980--18179154	66	2.8	63	76	10	180	29	17	29	24	1.97
18182638--18183035	132	3.0	132	86	0	546	27	17	19	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208