genome.fa.s18.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  63  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23536997--23537175	55	3.1	54	64	22	128	49	7	2	41	1.43
23537097--23537131	18	2.0	17	88	5	52	60	0	0	40	0.97
23537207--23537238	16	1.9	17	93	6	57	46	0	0	53	1.00
23536960--23537252	120	2.4	120	92	2	482	50	5	2	42	1.36
23539557--23539588	8	4.0	8	95	0	55	71	15	0	12	1.14
23540622--23540709	44	2.0	44	93	0	149	46	10	7	35	1.67
23541202--23541264	21	2.7	23	77	18	69	36	1	0	61	1.05
23541234--23541263	15	2.0	15	93	0	51	36	0	0	63	0.95
23541937--23541974	16	2.4	16	90	0	58	36	0	26	36	1.57
23543394--23543430	16	2.4	16	90	4	58	59	5	2	32	1.34
23543547--23543668	60	2.0	60	85	6	167	54	12	0	31	1.43
23543662--23543772	23	4.8	23	80	16	140	53	17	0	29	1.44
23543661--23543752	42	2.2	42	98	0	175	53	17	0	29	1.44
23543698--23543774	27	3.0	27	87	9	117	54	15	0	29	1.42
23543748--23543934	80	2.3	80	94	0	329	56	12	0	31	1.36
23543869--23543915	23	2.1	22	84	4	58	59	6	0	34	1.23
23543685--23544155	101	4.6	100	85	7	585	56	13	0	30	1.40
23543751--23544032	80	3.5	84	81	12	244	57	12	0	30	1.35
23543661--23544158	19	24.3	20	69	20	182	55	13	0	30	1.40
23544166--23544235	27	2.6	27	90	0	113	18	30	21	30	1.97
23547962--23547990	11	2.6	11	100	0	58	20	27	6	44	1.77
23548815--23548839	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23549490--23549525	18	2.0	18	94	0	63	25	27	8	38	1.84
23549958--23550005	25	1.9	25	100	0	96	45	0	14	39	1.45
23550051--23550554	23	22.1	23	74	13	373	49	24	0	26	1.54
23550048--23550545	114	4.4	113	80	7	494	48	24	0	26	1.54
23550163--23550422	45	5.8	40	84	8	162	49	24	0	25	1.55
23550049--23550539	251	2.0	249	87	4	711	48	24	0	26	1.54
23550548--23550794	115	2.1	116	94	0	433	40	7	6	45	1.59
23553804--23554176	124	3.0	124	89	2	543	33	21	14	30	1.93
23555220--23555259	19	2.1	19	90	0	62	25	2	15	57	1.50
23555319--23555368	11	4.5	11	80	12	50	50	6	0	44	1.26
23555317--23555357	21	1.9	22	90	5	66	53	4	0	41	1.22
23555510--23555570	29	2.1	29	81	6	70	34	1	1	62	1.15
23560587--23560624	5	7.6	5	93	0	67	57	0	0	42	0.98
23561289--23561343	25	2.2	26	78	12	62	14	20	5	60	1.54
23565617--23565652	17	2.2	16	90	5	54	69	0	27	2	1.02
23566453--23566525	31	2.4	32	77	13	82	23	10	20	45	1.83
23574540--23574825	101	2.8	101	91	1	457	24	17	26	31	1.97
23574540--23574823	51	5.6	49	77	11	254	24	17	26	31	1.97
23574747--23574827	26	3.2	26	66	22	71	22	14	28	34	1.94
23574847--23574961	41	2.7	44	78	10	132	20	19	25	34	1.96
23580604--23580629	5	5.2	5	100	0	52	19	0	38	42	1.51
23583835--23583955	21	5.8	21	75	3	91	14	21	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23583834--23583957	42	3.0	42	83	3	133	14	21	20	42	1.88
23583817--23583938	63	1.9	63	83	3	156	15	21	20	42	1.89
23604475--23605465	201	5.0	201	89	4	1386	19	30	19	30	1.96
23605301--23605596	162	1.8	162	90	1	477	21	30	20	27	1.98
23608270--23608326	27	2.1	28	83	9	73	50	0	3	45	1.18
23611313--23611337	12	2.1	12	100	0	50	64	0	16	20	1.30
23611484--23611540	26	2.2	26	84	6	71	42	17	14	26	1.87
23616117--23616182	33	2.1	30	83	8	78	48	7	16	27	1.73
23620014--23620133	62	1.9	62	85	6	163	40	4	12	43	1.62
23626324--23626414	40	2.2	41	82	9	114	52	10	1	35	1.44
23640831--23640855	4	6.2	4	100	0	50	24	0	76	0	0.80
23645774--23646037	103	2.5	104	89	3	406	30	29	20	19	1.97
23647312--23647465	37	4.2	37	75	3	130	18	14	28	38	1.89
23658972--23659054	42	2.0	43	85	2	114	34	22	14	27	1.93
23663020--23663054	17	2.2	17	90	10	56	20	34	31	14	1.92
23668142--23668198	30	1.9	30	88	0	87	19	35	0	45	1.50
23672780--23672807	7	4.0	7	100	0	56	71	0	0	28	0.86
23677391--23677441	20	2.6	19	84	9	66	41	15	15	27	1.88
23678159--23678195	12	3.0	13	76	15	51	56	0	0	43	0.99
23679770--23679867	25	4.0	25	72	6	83	34	18	22	24	1.96
23679977--23680037	25	2.4	25	94	0	113	34	19	29	16	1.94
23680485--23680527	21	2.0	21	90	0	68	39	18	0	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23681523--23681584	31	2.0	31	81	12	74	38	9	11	40	1.74
23681922--23681969	9	5.1	9	82	7	60	68	2	0	29	1.01
23681926--23681975	9	5.3	9	86	9	55	68	2	0	30	1.01
23681922--23681975	19	2.9	18	81	8	63	66	1	0	31	1.02
23681928--23681975	10	5.2	9	83	11	53	68	2	0	29	1.01
23682696--23682733	18	2.1	18	95	0	67	60	2	13	23	1.45
23684801--23684859	31	1.9	31	89	0	91	40	10	5	44	1.60
23693463--23693488	13	2.0	13	100	0	52	61	30	0	7	1.24
23698468--23698607	25	5.6	25	74	10	99	19	26	20	34	1.96
23698499--23698629	50	2.7	49	81	8	149	18	26	19	35	1.95
23698537--23698632	49	2.0	49	83	4	124	20	26	17	35	1.95
23698547--23698649	49	2.1	49	82	7	120	21	26	20	32	1.98
23706309--23706368	29	2.1	29	90	0	93	16	23	33	26	1.96
23707280--23707332	17	3.2	16	86	7	79	45	5	24	24	1.75
23710651--23710700	17	2.9	17	90	0	73	44	4	24	28	1.72
23724770--23725959	641	1.9	641	82	3	1527	38	8	17	34	1.81
23733336--23733391	27	2.1	27	96	0	103	26	19	3	50	1.64
23733517--23733552	14	2.6	14	100	0	72	38	13	36	11	1.81
23751087--23751183	27	3.7	27	84	4	126	19	16	21	42	1.89
23762237--23762713	31	15.6	29	65	16	112	28	9	19	42	1.83
23762174--23762848	184	3.7	184	88	3	944	29	9	18	41	1.83
23780303--23780525	40	5.6	40	85	3	236	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23780457--23780534	40	1.9	41	82	10	97	26	28	21	23	1.99
23788202--23788371	40	4.3	40	90	0	234	26	28	21	24	1.99
23788200--23788424	80	2.8	79	81	4	211	26	28	21	24	1.99
23801532--23801579	25	2.0	25	91	4	80	56	4	8	31	1.48
23803111--23803144	3	11.3	3	93	0	59	32	2	0	64	1.08
23808700--23808725	3	8.7	3	100	0	52	0	30	0	69	0.89
23822733--23822918	89	2.1	90	85	9	249	43	4	4	48	1.42
23822924--23822999	26	3.0	25	71	7	73	42	5	2	50	1.39
23823047--23823086	16	2.5	17	76	15	50	47	0	0	52	1.00
23823151--23823418	142	1.9	145	91	7	447	46	2	3	47	1.34
23823304--23823337	17	2.0	17	88	11	52	44	0	0	55	0.99
23823498--23823591	45	2.1	45	88	3	138	32	27	5	34	1.80
23823570--23823602	16	2.1	16	94	0	57	30	36	0	33	1.58
23823583--23823625	21	2.0	21	90	0	68	34	37	2	25	1.69
23841338--23841600	40	6.6	40	88	3	325	26	27	20	24	1.99
23849365--23849446	40	2.2	37	91	8	130	28	24	19	28	1.99
23849377--23849522	40	3.7	40	82	5	161	26	27	21	25	1.99
23873104--23873128	13	1.9	13	100	0	50	8	0	24	68	1.16
23874105--23874440	114	2.9	114	96	0	609	42	3	13	40	1.60
23874913--23875059	41	3.6	41	88	3	217	27	19	29	23	1.98
23877906--23877964	28	2.0	31	83	9	79	44	0	5	50	1.24
23879648--23879753	41	2.6	41	90	3	169	30	19	29	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23882702--23882750	23	2.1	23	100	0	98	28	18	8	44	1.78
23883239--23883275	17	2.2	17	95	0	65	37	8	5	48	1.56
23888718--23888755	13	2.7	14	88	8	51	55	5	23	15	1.61
23892217--23892322	52	2.0	52	92	0	176	37	16	2	43	1.62
23893570--23893594	13	1.9	13	100	0	50	32	4	8	56	1.47
23893699--23893997	50	5.7	52	88	5	369	25	21	28	23	1.99
23901339--23901583	96	2.4	104	81	12	301	26	20	29	23	1.99
23905550--23905734	40	4.7	40	82	7	209	24	22	27	25	2.00
23905550--23905734	79	2.3	81	82	7	227	24	22	27	25	2.00
23905603--23905767	79	2.1	79	83	6	201	26	20	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208