genome.fa.s18.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  206  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63441153--63441215	7	8.9	7	76	8	56	34	46	3	15	1.62
63441568--63441708	76	1.9	76	83	5	187	31	26	24	18	1.98
63447759--63447803	3	15.0	3	100	0	90	33	0	0	66	0.92
63448750--63448855	50	2.1	50	85	7	142	39	21	8	30	1.83
63451775--63451817	21	2.0	21	86	8	61	34	0	6	58	1.25
63452121--63452165	16	2.8	16	89	0	72	31	24	0	44	1.54
63454526--63454558	17	1.9	18	88	11	52	15	6	0	78	0.93
63456306--63456383	30	2.6	30	77	2	86	44	2	20	32	1.65
63459759--63460267	72	7.1	72	91	0	777	26	19	23	30	1.98
63462996--63463139	56	2.5	56	92	2	234	39	19	9	31	1.84
63465597--63465677	24	3.5	22	78	8	81	33	6	23	37	1.80
63465575--63465654	24	3.4	23	75	14	83	32	7	25	35	1.84
63465575--63465672	47	2.1	46	86	3	135	33	6	24	35	1.80
63465592--63465702	46	2.4	47	81	1	116	35	8	20	36	1.83
63465699--63465788	23	4.0	22	69	13	58	27	2	26	43	1.67
63467454--63467478	2	12.5	2	100	0	50	52	0	0	48	1.00
63467632--63467702	16	4.3	15	71	16	52	54	1	2	40	1.23
63467987--63468032	24	2.0	24	91	4	76	65	4	2	28	1.23
63468266--63468326	30	2.1	29	84	9	79	45	13	18	22	1.83
63468585--63468633	16	2.9	16	77	11	53	28	20	6	44	1.75
63473282--63473502	72	3.1	72	90	2	320	27	19	22	30	1.98
63475787--63475829	21	2.0	21	86	8	61	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63475882--63475924	21	2.1	20	86	4	59	27	2	2	67	1.15
63476878--63476932	22	2.5	22	96	0	101	34	25	12	27	1.92
63477396--63477422	3	9.0	3	100	0	54	33	0	0	66	0.92
63482600--63482814	72	3.0	72	89	2	317	27	19	25	27	1.98
63485022--63485314	57	5.4	50	78	12	280	39	21	9	29	1.85
63485022--63485314	51	5.4	56	79	12	349	39	21	9	29	1.85
63485022--63485314	108	2.7	107	91	1	478	39	21	9	29	1.85
63491424--63491464	21	2.0	21	90	0	64	19	29	21	29	1.98
63497467--63497586	56	2.2	54	85	10	158	40	20	8	31	1.82
63497467--63497567	50	2.0	51	92	1	168	41	20	7	29	1.81
63504484--63504520	19	2.0	20	84	10	51	27	27	0	45	1.54
63505168--63505410	43	5.7	43	87	0	281	26	35	17	20	1.95
63505163--63505447	43	6.7	43	84	3	139	30	33	15	20	1.94
63507829--63507870	3	14.0	3	100	0	84	66	0	0	33	0.92
63509522--63509575	27	2.0	27	100	0	108	22	18	3	55	1.58
63509801--63509868	29	2.3	30	80	7	86	26	16	17	39	1.90
63510669--63510747	40	2.0	39	82	9	97	21	32	25	20	1.97
63511378--63511422	14	3.4	13	82	11	56	31	48	2	17	1.59
63511800--63511845	20	2.4	20	82	7	51	63	4	4	28	1.33
63511852--63512248	41	9.7	41	89	3	550	31	30	21	17	1.96
63511852--63512228	122	3.1	123	92	1	596	30	30	21	16	1.96
63516100--63516280	93	1.9	93	93	0	308	26	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63516193--63516453	72	3.6	72	93	1	434	26	19	24	30	1.98
63523212--63523316	48	2.2	48	96	0	192	21	12	19	46	1.82
63525094--63525247	51	3.0	51	98	0	290	23	36	12	27	1.91
63525737--63526029	72	4.1	71	88	3	435	26	20	21	31	1.98
63526176--63526253	33	2.4	33	100	0	156	19	12	33	34	1.90
63527253--63527278	13	2.0	13	100	0	52	53	0	0	46	1.00
63528113--63528217	50	2.1	51	92	1	176	40	20	9	28	1.84
63528219--63528640	18	24.3	18	72	11	290	32	17	11	37	1.87
63528113--63528399	54	5.5	51	77	11	179	35	18	10	34	1.85
63528291--63528519	85	2.7	85	93	1	388	34	17	11	35	1.86
63528407--63528743	50	6.5	50	75	8	291	35	18	12	33	1.88
63528376--63528689	103	3.0	103	92	0	540	33	17	12	35	1.88
63530251--63530282	16	2.0	16	100	0	64	43	6	12	37	1.68
63542381--63542435	27	2.0	27	100	0	110	38	3	18	40	1.68
63545951--63545991	21	2.0	21	90	0	64	29	21	29	19	1.98
63560688--63560836	72	2.1	72	91	2	237	27	18	24	29	1.98
63569171--63569340	71	2.4	72	92	2	279	41	27	3	27	1.72
63569157--63569348	71	2.7	71	87	6	273	42	25	4	28	1.75
63569341--63569375	3	11.7	3	100	0	70	68	0	0	31	0.90
63569645--63569850	102	2.0	102	100	0	412	26	24	17	31	1.97
63573651--63573836	73	2.5	72	97	1	345	41	24	6	27	1.79
63573837--63573865	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63577132--63577352	72	3.1	72	90	3	331	27	19	20	32	1.97
63586159--63586300	72	2.0	72	94	2	250	29	21	19	30	1.97
63600810--63600849	18	2.2	18	95	0	71	47	15	10	27	1.77
63602505--63602535	15	2.1	15	93	0	53	45	3	19	32	1.66
63606232--63606318	3	29.0	3	100	0	174	33	0	0	66	0.92
63608789--63609297	72	7.1	72	92	2	819	27	19	22	31	1.98
63610465--63610536	36	2.0	36	100	0	144	19	13	13	52	1.74
63615485--63615545	7	8.3	7	77	15	52	75	8	1	14	1.11
63615475--63615532	30	1.9	30	100	0	116	74	6	3	15	1.17
63615479--63615545	14	4.5	15	74	10	66	74	7	2	14	1.16
63615475--63615543	30	2.3	30	92	5	113	73	7	2	15	1.17
63616242--63616318	3	25.7	3	78	0	82	61	5	3	29	1.36
63617578--63618172	100	5.9	100	85	2	739	24	20	22	32	1.98
63617595--63618157	50	11.3	50	69	8	241	23	20	23	32	1.98
63627498--63627527	11	2.7	11	100	0	60	23	10	6	60	1.52
63631000--63631445	100	4.5	100	82	1	491	33	23	18	24	1.97
63631012--63631297	50	5.7	50	71	6	220	34	24	18	22	1.96
63645459--63645522	22	3.2	19	75	14	65	42	1	3	53	1.26
63645520--63645561	19	2.2	20	86	4	59	40	0	4	54	1.21
63646594--63646639	21	2.2	21	100	0	92	52	13	15	19	1.75
63652874--63652915	21	2.0	21	95	0	75	30	14	7	47	1.71
63656877--63656927	23	2.2	24	89	3	77	5	13	1	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63656874--63656941	33	2.1	33	81	10	77	5	16	2	75	1.13
63662099--63662157	29	2.0	31	86	6	86	44	11	6	37	1.68
63662300--63662330	15	2.0	16	93	6	55	48	0	0	51	1.00
63663720--63663750	15	2.0	16	93	6	55	48	0	0	51	1.00
63664242--63664288	23	2.0	24	91	4	78	46	0	2	51	1.13
63664267--63664318	19	2.7	20	82	11	63	36	0	7	55	1.29
63665692--63665716	2	12.5	2	100	0	50	48	0	0	52	1.00
63666593--63666635	21	2.0	22	90	4	70	6	6	16	69	1.32
63667757--63667800	21	2.1	22	87	8	65	25	4	2	68	1.20
63668759--63668913	41	3.8	42	75	14	153	15	16	29	39	1.89
63668759--63668914	82	1.9	82	85	10	221	15	16	28	39	1.89
63668738--63668928	82	2.3	81	81	12	212	18	16	28	37	1.92
63669524--63669611	7	11.9	7	76	11	86	19	0	48	31	1.49
63669531--63669611	22	3.6	22	85	6	117	19	0	48	32	1.50
63669504--63669612	7	15.0	7	72	12	60	20	0	45	33	1.51
63669528--63669621	15	6.3	15	73	19	54	19	1	48	30	1.55
63671129--63671162	13	2.6	13	80	0	50	23	47	0	29	1.52
63672459--63672651	69	2.8	69	90	1	300	44	5	4	46	1.46
63672678--63672772	9	10.6	9	73	17	81	46	17	1	34	1.56
63672653--63672727	22	3.6	21	76	23	79	45	17	1	36	1.57
63672678--63672772	16	5.3	18	75	14	81	46	17	1	34	1.56
63672652--63672771	38	3.0	38	84	10	125	47	17	0	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63672851--63672890	16	2.5	16	91	0	71	50	22	0	27	1.50
63678433--63678478	18	2.6	18	89	0	74	28	41	26	4	1.74
63678440--63678474	9	3.9	9	92	0	61	31	42	25	0	1.55
63678722--63679118	43	9.2	42	86	6	442	16	20	33	29	1.95
63678722--63679118	129	3.1	128	86	4	521	16	20	33	29	1.95
63679216--63679258	22	2.0	22	90	0	68	41	25	20	11	1.86
63683408--63683508	48	2.1	48	90	0	157	55	8	26	8	1.60
63686620--63686654	16	2.2	16	90	5	54	57	17	5	20	1.60
63691147--63691176	16	1.9	16	93	6	53	40	20	13	26	1.89
63691582--63691668	45	1.9	45	97	0	165	55	8	25	11	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208