genome.fa.s18.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  141  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45943048--45943120	27	2.7	27	89	2	112	34	16	9	39	1.81
45943820--45943954	25	5.6	25	65	24	85	20	3	33	42	1.69
45943790--45943951	44	3.5	44	85	11	234	20	3	32	43	1.70
45943853--45943951	51	1.9	51	97	0	189	20	3	33	43	1.67
45948767--45948797	14	2.2	14	100	0	62	64	22	6	6	1.40
45953146--45953243	51	1.9	51	85	0	133	29	17	10	42	1.82
45969620--45969716	48	2.0	48	95	0	176	48	12	10	28	1.73
45970139--45970188	14	3.2	16	78	18	61	42	0	0	58	0.98
45970143--45970184	16	2.5	16	88	7	57	45	0	0	54	0.99
45970142--45970187	12	3.5	13	82	8	58	43	0	0	56	0.99
45973150--45973272	57	2.1	57	85	4	167	27	22	4	44	1.73
45973260--45973289	8	3.8	8	100	0	60	13	33	0	53	1.40
45978771--45978993	39	5.7	40	85	8	266	25	22	27	24	2.00
45978771--45978993	79	2.8	81	84	9	282	25	22	27	24	2.00
45978771--45979026	79	3.3	79	81	10	217	26	21	27	24	1.99
45992298--45992333	12	2.9	12	91	4	54	16	27	0	55	1.42
45992298--45992333	18	1.9	19	88	5	56	16	27	0	55	1.42
45995161--45995238	38	2.1	38	97	0	147	25	16	11	46	1.81
46000682--46000730	20	2.5	20	81	15	66	12	24	6	57	1.58
46007410--46007457	25	2.0	24	91	4	78	37	20	25	16	1.93
46013668--46013852	73	2.5	73	82	2	219	24	25	27	22	2.00
46014831--46014882	25	2.1	24	82	3	59	34	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46015067--46015175	24	4.5	24	72	11	71	34	17	28	19	1.94
46017484--46017526	13	3.3	13	81	18	54	74	0	4	20	1.00
46017485--46017533	17	2.9	15	80	16	53	73	2	4	20	1.10
46017486--46017533	4	11.2	4	79	20	53	72	2	4	20	1.11
46022903--46022947	23	2.0	23	95	0	81	24	24	24	26	2.00
46024703--46024803	23	4.4	23	92	0	166	22	20	24	31	1.98
46024933--46025005	38	1.9	37	86	8	103	45	1	21	31	1.61
46028718--46028780	27	2.3	27	78	5	74	44	20	15	19	1.87
46030435--46030490	18	2.8	20	84	10	71	30	17	21	30	1.96
46032605--46032658	27	2.0	27	85	7	74	40	20	11	27	1.86
46034752--46034792	21	2.0	21	90	0	64	48	0	4	46	1.23
46038984--46039048	27	2.4	27	81	0	76	36	15	29	18	1.91
46045558--46045592	18	1.9	18	88	11	54	25	17	14	42	1.86
46047050--46047382	28	11.9	27	84	4	369	32	22	21	24	1.98
46047051--46047366	112	2.8	112	94	0	535	31	21	22	23	1.98
46047932--46047981	9	5.6	9	97	0	82	24	10	26	40	1.86
46048142--46048166	12	2.1	12	100	0	50	16	24	36	24	1.94
46048460--46048670	27	7.9	26	81	9	158	19	17	20	42	1.90
46048460--46048670	54	3.9	54	83	3	246	19	17	20	42	1.90
46048460--46048670	80	2.6	80	85	3	271	19	17	20	42	1.90
46053533--46053586	9	5.9	9	76	10	56	40	20	11	27	1.86
46055718--46055896	89	2.0	89	96	0	331	32	18	12	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46056462--46056725	113	2.4	113	85	5	365	43	16	10	29	1.81
46056462--46056725	57	4.7	57	83	6	324	43	16	10	29	1.81
46059072--46059104	2	16.5	2	100	0	66	0	48	0	51	1.00
46063450--46063528	39	2.0	39	97	0	149	21	20	34	24	1.97
46063765--46063855	43	2.1	43	89	0	137	57	6	3	32	1.41
46063780--46063844	15	4.5	15	68	14	55	60	4	1	33	1.27
46064783--46064815	11	3.0	11	100	0	66	27	18	9	45	1.79
46065011--46065042	7	4.4	7	96	4	55	12	0	0	87	0.54
46072934--46073044	24	4.6	24	83	0	141	18	26	4	51	1.65
46077896--46077964	27	2.6	27	73	0	66	18	31	17	31	1.94
46082378--46082443	27	2.4	27	87	5	89	13	24	22	39	1.90
46083730--46083766	19	2.1	19	85	10	51	27	21	13	37	1.91
46085812--46085886	26	2.8	26	79	2	78	36	18	6	38	1.77
46088738--46088838	41	2.5	41	83	0	121	22	22	22	31	1.98
46097078--46097140	31	2.0	31	81	6	74	52	9	4	33	1.55
46097304--46097358	23	2.4	21	75	16	56	49	1	0	49	1.11
46097054--46097358	146	2.1	146	83	4	391	44	10	3	40	1.56
46099635--46099713	37	2.1	37	90	0	122	25	31	18	24	1.98
46099832--46099980	49	3.1	49	87	1	212	27	31	9	31	1.88
46110121--46110296	90	2.0	90	97	0	334	27	13	22	36	1.92
46110258--46110325	29	2.3	29	92	0	118	19	7	27	45	1.76
46110273--46110465	61	3.2	60	80	2	199	21	10	25	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46116340--46116369	14	2.1	14	93	0	51	63	20	0	16	1.31
46117760--46118056	50	5.8	50	84	3	319	22	28	22	26	1.99
46119357--46119538	20	9.1	20	69	11	97	35	18	29	16	1.93
46119349--46119538	40	4.8	40	84	0	227	36	17	28	16	1.93
46119349--46119538	80	2.4	80	87	0	263	36	17	28	16	1.93
46121828--46121875	24	2.0	24	91	0	78	8	29	41	20	1.81
46121656--46121851	96	2.0	96	83	0	239	22	27	26	23	2.00
46121836--46121884	24	2.0	24	88	0	71	8	30	38	22	1.83
46121738--46121964	120	1.9	119	87	3	330	19	29	28	21	1.98
46122837--46122989	37	4.2	37	86	1	209	38	28	13	18	1.90
46122821--46122989	73	2.3	73	86	4	225	40	28	12	18	1.87
46125138--46125163	4	6.5	4	100	0	52	73	0	0	26	0.84
46129690--46130021	87	3.8	87	89	0	511	25	23	21	29	1.99
46143616--46143683	34	2.0	34	88	0	100	30	11	26	30	1.92
46145268--46145305	18	2.1	18	100	0	76	34	23	21	21	1.97
46153523--46153700	27	6.6	27	93	1	275	26	14	27	31	1.95
46161590--46161762	27	6.6	27	90	4	248	25	15	28	31	1.95
46161590--46161762	55	3.3	52	88	8	244	25	15	28	31	1.95
46161590--46161762	82	2.2	76	87	6	247	25	15	28	31	1.95
46169614--46169760	27	5.6	27	88	5	194	26	14	27	31	1.95
46177268--46177437	25	6.6	27	82	10	187	25	14	29	30	1.95
46177269--46177418	27	5.8	25	83	11	155	25	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46177268--46177437	52	3.3	53	80	12	185	25	14	29	30	1.95
46177732--46177782	25	2.2	24	80	13	61	17	3	25	52	1.61
46192667--46192741	27	2.7	28	93	2	125	25	13	29	32	1.93
46200140--46200315	27	6.6	27	91	3	266	26	14	27	31	1.95
46200140--46200315	80	2.2	81	88	4	266	26	14	27	31	1.95
46208191--46208364	27	6.4	27	93	1	258	25	13	27	32	1.94
46214602--46214658	23	2.4	24	88	8	82	19	1	49	29	1.58
46216648--46216715	26	2.6	26	92	0	118	38	20	23	17	1.93
46216925--46217063	27	5.2	26	77	13	88	21	17	18	41	1.90
46216939--46217063	54	2.3	54	81	0	160	20	17	19	42	1.89
46223580--46223688	28	4.0	28	85	4	150	30	19	24	25	1.98
46223580--46223688	54	2.0	55	85	3	148	30	19	24	25	1.98
46223835--46223907	14	5.6	14	72	21	68	38	16	23	21	1.93
46223830--46223924	25	3.7	25	92	4	154	40	16	22	21	1.92
46224101--46224269	27	6.3	26	81	6	162	21	19	17	40	1.91
46224101--46224273	81	2.2	80	85	5	224	21	20	17	39	1.92
46224100--46224273	54	3.2	54	82	2	208	21	20	17	39	1.92
46225635--46225671	9	4.1	9	85	0	56	48	13	8	29	1.71
46242294--46242416	26	5.0	26	67	19	84	18	20	21	39	1.92
46246472--46246626	26	6.2	25	66	14	79	20	20	20	38	1.93
46246514--46246636	26	5.0	26	68	16	91	17	20	21	40	1.91
46248476--46248529	28	1.9	28	96	0	99	24	11	1	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46256126--46256425	27	11.1	27	77	9	184	39	20	20	20	1.93
46256175--46256521	27	12.9	27	80	6	312	37	19	19	22	1.94
46256228--46256558	81	4.1	81	79	8	248	38	18	19	23	1.93
46256579--46256644	24	2.8	24	81	9	73	22	7	24	45	1.78
46256608--46256665	24	2.4	24	91	5	91	18	6	24	50	1.72
46256729--46256779	27	1.9	26	84	11	68	17	27	25	29	1.98
46256837--46256975	32	4.4	32	84	0	181	22	21	17	38	1.94
46258180--46258224	23	2.0	23	95	0	81	24	17	13	44	1.85
46262141--46262291	74	2.0	74	96	0	275	26	15	12	45	1.82
46263239--46263270	16	2.0	16	93	0	55	59	0	15	25	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208