genome.fa.s18.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  89  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30896400--30896440	6	6.8	6	88	0	55	39	0	9	51	1.35
30898175--30898205	12	2.6	12	94	0	53	6	22	41	29	1.78
30907243--30907272	12	2.5	12	94	0	51	6	30	40	23	1.80
30916471--30916756	22	13.0	22	73	19	154	31	1	11	54	1.45
30916604--30916775	49	3.5	49	91	0	272	32	1	11	54	1.44
30916702--30916759	19	2.9	19	76	14	62	36	1	8	53	1.42
30916595--30916780	27	7.8	24	75	17	160	31	1	12	54	1.44
30916469--30916704	19	12.2	19	68	24	120	31	1	12	54	1.46
30916791--30916921	62	2.1	63	95	1	237	38	10	16	35	1.83
30918020--30918095	25	3.0	25	76	16	77	55	5	6	32	1.48
30918112--30918153	12	3.5	12	84	12	59	54	0	9	35	1.33
30919264--30919385	60	2.0	60	85	3	165	30	0	14	54	1.47
30919419--30919501	39	2.2	39	95	2	150	55	3	2	38	1.30
30919538--30919579	16	2.7	15	85	7	57	38	2	2	57	1.25
30922591--30922635	22	2.1	21	87	4	63	2	31	2	64	1.18
30922720--30922776	27	2.1	27	87	6	80	22	40	22	14	1.90
30925043--30925090	26	2.0	25	88	12	73	52	4	4	39	1.40
30929317--30929387	25	2.8	25	80	0	79	33	16	25	23	1.96
30933367--30933460	44	2.1	44	90	0	143	21	23	26	28	1.99
30935350--30935402	25	2.1	25	100	0	106	66	7	7	18	1.41
30939066--30939377	43	7.3	43	87	2	439	26	28	17	26	1.98
30939386--30939437	15	3.1	17	81	18	56	44	1	0	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30939637--30939721	43	2.0	43	86	4	118	47	10	8	34	1.68
30941899--30941924	13	2.0	13	100	0	52	30	0	15	53	1.42
30944224--30944262	7	5.4	7	81	6	51	35	46	0	17	1.49
30944215--30944262	14	3.4	13	81	16	51	33	45	0	20	1.52
30944224--30944265	15	2.9	15	85	3	59	38	45	0	16	1.48
30944245--30944285	21	1.9	22	85	5	57	41	39	0	19	1.52
30944512--30944545	15	2.3	15	89	0	50	32	52	0	14	1.42
30944098--30944698	283	2.1	286	85	4	811	41	26	2	29	1.67
30944843--30945443	114	5.3	114	87	1	785	26	27	22	23	2.00
30946160--30946192	16	2.1	16	100	0	66	42	0	0	57	0.98
30953031--30953088	26	2.2	26	84	0	71	44	18	12	24	1.84
30953974--30954000	13	2.1	13	100	0	54	29	22	7	40	1.81
30988517--30988568	24	2.2	24	89	6	79	28	21	30	19	1.97
30993544--30993832	44	6.6	44	85	0	373	31	21	19	27	1.97
30996543--30996646	51	2.0	51	94	0	181	28	32	2	35	1.72
31001948--31002016	17	4.2	17	71	14	63	13	28	42	15	1.85
31007935--31007971	14	2.6	14	82	0	56	24	37	18	18	1.94
31008628--31008674	21	2.2	21	84	0	58	25	36	10	27	1.89
31009622--31009660	19	2.1	19	85	9	53	15	2	7	74	1.15
31009649--31009719	8	8.6	8	90	6	106	11	1	8	78	1.01
31009649--31009719	17	4.3	16	87	7	106	11	1	8	78	1.01
31009649--31009719	25	2.8	26	93	4	119	11	1	8	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31009632--31009720	25	3.5	24	89	6	115	12	1	7	78	1.01
31021734--31021758	11	2.3	11	100	0	50	20	20	16	44	1.87
31022208--31022261	26	2.1	26	100	0	108	25	12	22	38	1.90
31023032--31023112	40	2.0	40	100	0	162	44	22	13	19	1.86
31025877--31025997	59	2.0	60	82	1	145	23	14	18	43	1.86
31027608--31027653	3	15.3	3	100	0	92	32	0	0	67	0.91
31045370--31045403	6	5.3	6	86	13	50	79	0	2	17	0.86
31045370--31045403	14	2.7	12	90	9	50	79	0	2	17	0.86
31048834--31048877	17	2.7	16	83	13	54	31	0	0	68	0.90
31050898--31050988	44	2.1	44	93	0	155	48	8	12	30	1.71
31052739--31052785	23	2.1	22	84	4	58	61	27	2	8	1.36
31053769--31054060	107	2.7	107	90	1	462	35	18	15	30	1.92
31054610--31054677	2	35.5	2	76	8	61	52	1	4	41	1.30
31054610--31054677	18	3.8	17	78	5	73	52	1	4	41	1.30
31055731--31055779	24	2.1	23	81	11	55	79	0	8	12	0.93
31055739--31055776	20	1.9	20	89	10	60	78	0	7	13	0.94
31055734--31055779	9	4.9	9	79	10	56	80	0	6	13	0.89
31056796--31056910	44	2.6	44	79	2	124	26	23	22	26	2.00
31056608--31057105	183	2.7	183	88	1	703	27	22	19	30	1.98
31056979--31057093	44	2.6	44	83	2	124	26	22	22	27	1.99
31057450--31057684	104	2.3	104	91	1	373	31	20	17	30	1.95
31057690--31057781	44	2.1	44	83	0	112	26	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31058054--31058112	24	2.5	24	88	0	91	28	23	11	35	1.91
31058584--31058789	108	1.9	108	90	0	331	47	11	16	24	1.80
31059113--31059170	17	3.5	16	81	13	64	6	12	0	81	0.88
31062918--31063209	107	2.7	107	89	1	453	35	18	14	30	1.91
31063668--31063786	51	2.3	51	81	11	127	47	0	11	40	1.46
31064140--31064194	3	18.7	3	90	3	85	67	1	1	29	1.11
31070206--31070246	6	6.8	6	100	0	82	65	17	0	17	1.27
31070244--31070270	8	3.4	8	100	0	54	55	11	11	22	1.66
31070294--31070341	18	2.7	18	75	12	53	29	10	20	39	1.86
31077738--31077940	91	2.2	91	92	0	343	47	2	4	45	1.36
31077738--31077871	44	3.0	44	68	16	112	46	2	4	46	1.38
31077865--31077925	28	2.2	28	85	5	81	45	0	3	50	1.17
31077783--31077925	44	3.2	43	69	20	121	46	1	3	48	1.27
31082334--31082369	18	1.9	18	88	5	54	61	0	0	38	0.96
31082334--31082375	18	2.3	18	84	8	50	61	0	2	35	1.09
31082382--31082421	21	2.0	21	85	9	57	62	5	2	30	1.29
31089859--31089908	16	3.1	16	78	13	57	68	0	2	30	1.01
31089851--31089915	33	2.0	33	88	8	98	66	0	3	30	1.07
31092727--31092769	18	2.5	17	81	7	50	39	0	6	53	1.28
31092741--31092780	19	2.2	19	86	4	55	32	0	2	65	1.06
31093464--31093525	32	1.9	32	83	6	81	37	6	16	40	1.74
31093472--31093539	32	2.1	32	81	10	77	36	5	13	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31093943--31093975	3	11.0	3	93	0	57	66	3	0	30	1.06
31095581--31096029	46	9.6	46	76	16	388	29	22	14	34	1.93
31095709--31095750	21	2.0	21	100	0	84	28	23	14	33	1.94
31095737--31095891	36	4.0	36	79	15	175	28	20	14	36	1.92
31095732--31095936	82	2.5	82	95	0	365	28	20	14	36	1.92
31095879--31095992	56	2.0	56	100	0	228	30	19	16	33	1.94
31099054--31099114	23	2.6	23	86	2	77	36	21	19	22	1.95
31100387--31100489	51	2.0	51	96	3	190	35	18	17	28	1.94
31109948--31110017	30	2.6	25	80	20	95	24	10	21	44	1.82
31111102--31111131	3	10.3	3	92	7	53	30	0	0	70	0.88
31119280--31119306	6	4.5	6	100	0	54	85	0	0	14	0.61
31123989--31124058	30	2.3	30	85	9	90	38	1	8	51	1.41
31134543--31134569	3	9.0	3	100	0	54	33	0	0	66	0.92
31139103--31139203	22	4.6	22	82	4	114	43	15	20	19	1.88
31139103--31139203	44	2.3	44	85	0	130	43	15	20	19	1.88
31139701--31139783	42	2.0	42	85	0	112	26	26	24	22	2.00
31142565--31142599	17	2.0	17	88	5	52	34	8	5	51	1.56
31148230--31148256	12	2.2	12	100	0	54	44	0	7	48	1.31
31149443--31149495	21	2.5	21	84	0	70	26	7	35	30	1.84
31150650--31150682	16	2.1	16	100	0	66	27	12	12	48	1.76
31150709--31150808	51	2.0	51	83	0	128	30	22	17	31	1.96
31151163--31151274	44	2.5	45	85	4	138	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31150752--31151275	190	2.8	189	87	1	771	29	20	19	31	1.97
31159388--31159432	19	2.3	20	88	7	67	44	6	22	26	1.77
31162970--31163046	3	25.3	3	71	7	57	59	3	6	29	1.40
31162973--31163037	24	2.7	24	83	9	71	60	4	6	29	1.41
31170098--31170131	17	1.9	18	88	5	52	29	11	14	44	1.81
31171197--31171253	11	5.2	11	80	14	55	29	0	5	64	1.15
31171204--31171296	19	4.8	18	72	17	62	37	0	3	59	1.14
31171207--31171253	11	4.3	10	82	15	58	25	0	4	70	1.05
31171260--31171315	19	3.1	18	87	7	69	39	1	3	55	1.28
31171852--31171883	4	8.0	4	100	0	64	25	0	0	75	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208