genome.fa.s18.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  159  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51765912--51765980	33	2.1	32	97	2	129	24	0	37	37	1.56
51765961--51766051	45	2.0	45	85	2	121	27	6	28	37	1.82
51766216--51766252	19	2.0	19	85	15	51	54	0	0	45	1.00
51767317--51767372	15	3.5	15	77	13	67	55	21	8	14	1.66
51772382--51772424	21	2.0	21	86	8	61	11	18	25	44	1.84
51772517--51772711	43	4.3	43	75	15	169	30	30	18	20	1.96
51772984--51773074	43	2.1	43	86	6	123	45	9	9	35	1.71
51776775--51776801	13	2.1	13	100	0	54	29	7	7	55	1.55
51777551--51777706	41	3.8	42	89	5	221	35	2	0	61	1.10
51777587--51777620	17	2.0	17	88	0	50	35	0	0	64	0.94
51777562--51777707	52	2.8	51	83	9	170	36	2	0	60	1.11
51777604--51777706	11	9.9	11	74	17	87	38	1	0	59	1.09
51778093--51778162	21	3.3	21	75	13	63	34	41	0	24	1.55
51778111--51778162	7	7.4	7	80	0	50	34	42	0	23	1.54
51778152--51778293	74	1.9	75	88	4	216	42	28	1	26	1.64
51778377--51778405	15	2.0	15	93	6	51	34	37	0	27	1.57
51778942--51779063	40	3.1	39	85	4	165	23	20	19	36	1.95
51783007--51783050	8	5.5	8	97	0	70	27	15	0	56	1.40
51795778--51795931	80	1.9	79	89	1	236	37	14	8	38	1.77
51800991--51801033	19	2.1	21	83	8	54	16	4	25	53	1.62
51805825--51805853	13	2.2	13	100	0	58	44	6	24	24	1.77
51806309--51806411	40	2.6	38	77	7	107	57	10	17	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51806631--51806675	20	2.2	20	96	0	81	71	0	11	17	1.14
51806631--51806700	20	3.5	19	81	16	79	65	2	12	18	1.38
51812604--51812633	15	2.0	15	93	0	51	83	0	16	0	0.65
51817735--51817793	23	2.4	25	78	16	70	42	0	15	42	1.46
51817944--51818029	41	2.1	40	93	2	145	26	15	22	36	1.93
51818755--51818782	13	2.2	13	100	0	56	25	0	21	53	1.46
51819715--51819744	6	4.8	6	95	4	51	13	3	0	83	0.77
51829905--51830008	45	2.3	45	83	0	127	44	14	16	25	1.85
51831248--51831275	5	5.6	5	100	0	56	60	0	0	39	0.97
51831257--51831297	20	2.0	20	85	9	55	51	2	0	46	1.14
51837041--51837094	19	2.7	21	77	11	60	46	14	0	38	1.45
51837054--51837318	137	1.9	137	85	3	365	40	9	5	44	1.60
51844915--51845005	22	4.2	22	81	1	94	40	20	3	35	1.69
51847046--51847088	21	2.0	21	100	0	86	23	27	13	34	1.93
51848945--51848996	25	2.1	25	92	7	88	32	15	23	28	1.95
51852827--51852996	40	4.3	40	85	1	207	23	21	30	24	1.99
51852849--51853031	79	2.3	80	80	1	208	25	21	29	24	1.99
51860101--51860270	40	4.3	40	85	1	207	23	21	30	24	1.99
51860123--51860305	79	2.3	80	80	1	208	25	21	29	24	1.99
51865754--51865832	37	2.1	37	88	0	113	25	31	17	25	1.97
51865950--51866219	47	5.7	47	96	1	486	29	30	9	31	1.88
51875388--51875442	5	11.2	5	84	3	58	60	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51875386--51875441	27	2.0	27	82	6	67	57	1	0	41	1.09
51879396--51879485	41	2.2	41	88	4	128	21	21	8	48	1.76
51880448--51880500	6	8.8	6	97	0	88	16	28	0	54	1.43
51880505--51880590	45	1.9	46	80	4	104	32	23	3	40	1.71
51884518--51884693	39	4.5	39	77	2	158	22	23	16	38	1.93
51892158--51892203	17	2.7	18	86	10	69	50	0	4	45	1.21
51892383--51892421	19	2.0	20	85	5	53	43	0	5	51	1.24
51892636--51892683	23	2.0	23	88	4	69	33	2	0	64	1.05
51894083--51894394	154	2.0	155	93	1	527	36	17	23	22	1.94
51894625--51894767	65	2.2	64	86	4	198	38	9	2	49	1.49
51897174--51897199	12	2.2	12	100	0	52	46	15	0	38	1.46
51899335--51899379	25	1.9	24	86	13	67	51	0	0	48	1.00
51899330--51899388	24	2.3	25	83	16	77	45	0	1	52	1.10
51899457--51899491	7	5.0	7	96	0	61	31	0	0	68	0.90
51900589--51900645	26	2.2	26	93	0	96	52	7	12	28	1.64
51901027--51901111	26	3.0	29	81	13	106	52	0	3	43	1.18
51901040--51901111	26	2.7	26	91	8	110	51	0	2	45	1.15
51901066--51901146	38	2.1	38	80	13	87	46	1	3	48	1.27
51901635--51901675	19	2.1	20	86	4	57	56	2	9	31	1.45
51903273--51903496	114	2.0	114	91	0	367	33	8	19	38	1.83
51905341--51905384	22	2.0	22	100	0	88	50	18	0	31	1.47
51905634--51905741	20	5.4	20	75	8	87	39	21	26	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51908208--51908247	12	3.4	12	93	3	64	15	37	32	15	1.88
51908200--51908247	24	2.0	23	84	11	62	18	35	33	12	1.89
51909393--51909444	20	2.6	19	82	14	61	42	17	13	26	1.86
51909516--51909572	10	5.5	10	79	8	69	40	3	17	38	1.67
51909512--51909572	21	2.9	21	97	0	113	40	4	16	37	1.70
51910526--51910750	118	1.9	116	80	7	256	36	16	15	31	1.91
51912935--51913016	38	2.0	41	86	11	116	51	8	0	40	1.33
51916679--51916745	27	2.4	27	90	2	107	53	7	0	38	1.29
51917070--51917122	6	8.8	6	89	0	70	5	32	30	32	1.81
51918744--51918787	16	2.8	15	83	10	61	59	2	2	36	1.23
51919082--51919321	19	12.5	19	70	20	144	54	12	1	31	1.47
51919061--51919218	22	6.9	22	81	14	171	54	13	1	31	1.47
51919065--51919219	49	3.3	49	78	14	211	54	13	1	30	1.47
51919137--51919319	40	4.5	41	70	21	152	55	13	1	30	1.48
51919153--51919336	101	1.8	100	92	3	316	54	13	1	29	1.48
51919254--51919319	21	3.2	21	91	6	100	59	10	1	28	1.40
51919480--51919532	3	18.7	3	78	18	60	0	35	0	64	0.94
51919472--51919529	14	3.9	16	81	18	72	0	34	0	65	0.93
51919475--51919544	17	4.4	17	73	18	53	0	31	0	68	0.90
51919770--51919802	16	2.0	17	88	5	50	54	0	0	45	0.99
51921331--51921368	18	2.1	19	85	14	53	63	7	2	26	1.35
51921580--51921677	28	3.5	28	76	6	74	29	3	2	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51921617--51921748	29	4.7	28	70	13	83	30	2	2	65	1.17
51921656--51921699	19	2.3	20	80	7	56	43	0	0	56	0.99
51921762--51921967	85	2.4	85	82	6	254	36	7	18	37	1.80
51929465--51929501	12	3.1	12	92	0	65	18	27	13	40	1.88
51945115--51945152	14	2.8	14	84	4	51	42	13	0	44	1.43
51948652--51948705	22	2.5	21	80	14	56	50	0	7	42	1.30
51949366--51949411	9	5.2	9	86	2	58	60	0	4	34	1.16
51953064--51953102	19	2.1	19	85	9	53	38	2	15	43	1.60
51955279--51955363	42	2.0	42	86	6	118	41	20	18	20	1.91
51956689--51956731	22	2.0	22	81	9	52	62	0	34	2	1.08
51957440--51957492	18	2.9	17	75	10	52	56	32	1	9	1.42
51958771--51958820	20	2.5	19	78	9	55	38	14	0	48	1.44
51959149--51959881	110	6.7	109	94	1	1225	31	15	19	33	1.93
51959149--51959881	329	2.2	329	93	0	1254	31	15	19	33	1.93
51972649--51972975	44	8.3	41	71	17	150	29	26	15	28	1.96
51985025--51985054	3	10.0	3	100	0	60	66	0	0	33	0.92
51986587--51986670	38	2.2	38	76	0	87	22	11	9	55	1.64
51992111--51992146	6	6.0	6	96	0	54	27	33	0	38	1.57
52006218--52006287	35	2.0	35	94	0	122	25	22	42	8	1.82
52007491--52007515	10	2.5	10	100	0	50	72	0	0	28	0.86
52011680--52011719	21	2.0	19	85	9	53	75	5	10	10	1.19
52012243--52012296	23	2.4	22	79	14	56	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52016676--52016742	34	1.9	35	87	3	100	31	7	13	47	1.70
52016829--52016867	20	2.0	20	94	0	69	48	2	0	48	1.15
52020455--52020504	25	2.0	25	88	0	73	62	4	30	4	1.32
52020564--52020605	6	6.8	6	82	15	50	45	0	54	0	0.99
52020567--52020605	18	2.2	18	95	0	69	43	0	56	0	0.99
52021689--52021747	30	1.9	31	89	3	93	47	1	23	27	1.61
52023280--52023333	16	3.2	16	74	25	58	42	11	11	35	1.76
52023280--52023670	17	22.1	17	69	20	105	43	12	13	30	1.81
52023280--52024014	18	41.9	17	65	21	115	44	11	13	30	1.79
52023312--52023356	22	2.0	23	95	4	83	35	8	11	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208