genome.fa.s18.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  174  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55419488--55419785	34	8.5	35	77	9	220	29	12	9	49	1.71
55419618--55419701	16	5.0	16	72	16	64	27	9	7	55	1.58
55419711--55419786	37	2.1	35	81	13	84	26	10	10	52	1.68
55422545--55422642	45	2.2	46	90	3	162	31	25	21	21	1.98
55422545--55422642	23	4.3	23	86	2	144	31	25	21	21	1.98
55424200--55424226	13	2.1	13	100	0	54	44	29	18	7	1.77
55425150--55425203	8	7.7	7	87	10	60	27	1	1	68	1.10
55425177--55425202	3	8.7	3	100	0	52	30	0	0	69	0.89
55431218--55431710	88	5.7	88	89	2	737	28	27	23	20	1.99
55431320--55431544	44	5.1	44	67	7	134	26	28	24	20	1.99
55431218--55431699	175	2.8	173	89	3	711	28	26	23	20	1.99
55431880--55431995	44	2.6	44	80	8	128	31	19	23	25	1.98
55433365--55433398	15	2.3	15	94	0	59	26	8	0	64	1.22
55433407--55433457	24	2.3	20	87	12	66	33	1	3	60	1.26
55433417--55433457	20	2.1	20	86	4	57	36	2	2	58	1.24
55433403--55433451	24	2.0	25	88	11	75	34	4	6	55	1.44
55437078--55437107	14	2.2	14	94	5	53	16	3	0	80	0.85
55437912--55438067	3	52.3	3	75	9	106	27	6	3	62	1.37
55438172--55438233	21	3.0	20	77	11	61	20	3	1	74	1.05
55438187--55438232	17	2.8	16	80	9	56	23	2	2	71	1.08
55438187--55438233	8	5.6	8	80	9	58	23	2	2	72	1.06
55438188--55438234	9	5.4	9	82	2	53	21	2	2	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55438188--55438241	24	2.2	24	87	9	74	20	1	3	74	1.07
55438200--55438252	24	2.3	23	75	15	54	20	3	3	71	1.17
55439484--55439509	13	2.0	13	100	0	52	30	23	30	15	1.95
55452489--55452540	7	7.4	7	83	16	72	86	11	0	1	0.65
55452473--55452549	16	5.1	14	79	14	73	81	12	2	2	0.89
55452489--55452540	21	2.5	21	93	6	88	86	11	0	1	0.65
55452978--55453015	17	2.2	18	90	4	60	76	2	21	0	0.91
55452991--55453034	7	6.1	7	81	5	52	77	0	20	2	0.88
55454083--55454966	179	4.9	179	87	2	1118	28	16	25	29	1.96
55454071--55454984	224	4.1	224	81	7	1014	29	16	25	29	1.96
55454083--55454978	45	20.0	45	82	5	948	29	16	25	29	1.97
55458266--55458643	44	8.1	44	73	16	307	33	17	21	27	1.96
55458204--55458702	142	3.5	142	95	0	872	33	17	22	27	1.96
55458565--55458663	44	2.2	44	82	3	119	32	19	20	28	1.97
55459054--55459124	28	2.6	27	88	2	97	39	38	4	18	1.70
55460418--55460460	20	2.2	20	87	4	61	34	4	6	53	1.49
55460422--55460468	19	2.4	19	83	13	60	36	4	6	53	1.46
55460541--55460578	14	2.4	16	83	16	53	28	7	2	60	1.38
55462218--55462251	9	3.9	9	84	7	52	44	0	2	52	1.16
55466813--55466873	26	2.3	26	78	18	72	40	4	3	50	1.40
55466831--55466878	26	1.9	26	87	8	73	41	4	6	47	1.48
55467395--55467444	15	3.1	17	77	16	52	44	4	8	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55467563--55467618	13	4.3	13	75	8	60	33	0	0	66	0.92
55467588--55467618	14	2.2	14	94	0	53	32	0	0	67	0.91
55470058--55470119	30	2.1	30	100	0	124	46	6	11	35	1.65
55472902--55472964	20	3.3	20	66	20	62	58	1	9	30	1.39
55472891--55472967	37	2.1	38	97	2	147	61	2	7	28	1.37
55474427--55474562	68	2.0	68	92	0	227	38	19	13	28	1.90
55474993--55475026	17	1.9	18	88	5	52	44	0	5	50	1.26
55475565--55475617	26	2.0	26	100	0	106	32	22	3	41	1.72
55475872--55475917	23	2.0	22	84	12	58	30	2	6	60	1.34
55477415--55477466	25	2.1	25	82	7	61	57	3	1	36	1.28
55477878--55478046	24	7.3	23	76	7	137	56	4	5	33	1.44
55477900--55478040	46	3.0	45	79	6	129	56	4	5	33	1.42
55477920--55478051	70	1.9	69	81	6	158	54	3	6	35	1.42
55477986--55478088	24	4.3	24	67	18	63	56	2	5	34	1.38
55481785--55481815	15	2.1	15	93	0	53	64	6	0	29	1.18
55482811--55482859	22	2.4	19	80	16	53	10	22	53	14	1.71
55483831--55483900	16	4.4	16	88	0	104	32	1	35	30	1.67
55483831--55483900	32	2.2	32	94	0	122	32	1	35	30	1.67
55484108--55484149	15	2.7	16	82	14	52	52	2	0	45	1.13
55484117--55484158	15	2.9	15	82	10	52	52	0	0	47	1.00
55484111--55484582	120	3.9	120	95	1	831	49	6	1	42	1.39
55484227--55484278	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55484111--55484411	59	5.0	59	70	16	260	50	5	1	42	1.35
55484347--55484398	15	3.6	15	80	12	56	53	1	0	44	1.11
55484596--55484812	91	2.4	91	86	5	269	47	4	3	45	1.40
55486229--55486255	11	2.5	11	100	0	54	51	18	7	22	1.70
55487947--55487986	19	2.1	19	100	0	80	40	0	20	40	1.52
55487966--55488029	32	2.0	32	93	6	112	48	0	20	31	1.50
55488323--55488347	13	1.9	13	100	0	50	20	16	8	56	1.65
55490006--55490036	7	4.3	7	95	4	53	70	25	0	3	1.02
55496531--55496564	9	3.9	9	84	7	52	44	0	2	52	1.16
55499646--55499740	47	2.0	47	100	0	190	38	14	16	29	1.89
55500372--55500412	19	2.2	19	86	0	55	19	9	2	68	1.29
55500402--55500472	10	7.3	10	80	4	56	35	7	0	57	1.26
55500402--55500471	20	3.5	20	76	3	79	35	7	0	57	1.26
55507577--55507603	12	2.2	12	100	0	54	51	0	0	48	1.00
55510697--55510756	3	20.3	3	86	10	88	31	1	1	65	1.13
55511959--55512013	20	2.8	19	81	13	60	67	0	5	27	1.12
55522979--55523043	34	1.9	34	87	0	94	32	23	15	29	1.95
55523067--55523173	45	2.4	45	80	13	121	42	14	12	29	1.82
55532144--55532196	25	2.1	25	100	0	106	37	15	7	39	1.75
55533925--55535839	597	3.2	597	94	0	3271	33	17	16	32	1.92
55541406--55541442	15	2.6	14	88	12	58	35	5	0	59	1.20
55541408--55541440	15	2.2	15	100	0	66	39	6	0	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55542161--55542216	27	2.1	27	100	0	112	46	7	7	39	1.59
55543725--55543757	12	2.6	13	85	9	50	36	18	3	42	1.66
55546514--55546567	28	1.9	28	85	7	74	51	9	5	33	1.57
55547433--55547506	28	2.6	28	95	4	132	22	20	29	27	1.98
55547428--55547516	28	3.2	28	88	1	126	26	20	26	25	1.99
55547866--55548249	27	14.3	27	78	7	230	19	16	19	43	1.88
55547866--55548249	54	7.1	52	79	5	282	19	16	19	43	1.88
55547883--55548249	81	4.5	82	79	4	334	19	16	19	43	1.88
55552817--55552873	28	2.0	28	100	0	114	50	14	7	28	1.68
55555090--55555133	4	11.0	4	90	0	61	25	6	0	68	1.14
55559684--55559714	15	2.1	15	93	0	53	32	3	32	32	1.74
55565511--55565775	103	2.6	104	91	0	424	29	30	20	19	1.97
55566103--55566167	30	2.2	29	81	8	76	30	27	6	35	1.81
55566110--55566167	30	1.9	30	85	0	80	31	24	6	37	1.82
55572999--55573263	103	2.6	104	91	0	415	29	30	20	19	1.97
55573591--55573655	30	2.2	29	81	8	76	30	27	6	35	1.81
55573598--55573655	30	1.9	30	85	0	80	31	24	6	37	1.82
55578172--55578245	10	7.3	10	77	7	51	35	6	0	58	1.25
55579437--55579481	15	2.8	17	83	12	51	46	2	4	46	1.35
55583198--55583287	45	2.0	45	95	0	162	33	12	11	43	1.77
55586463--55586519	29	2.0	29	85	0	78	33	3	10	52	1.53
55593509--55593578	36	1.9	36	82	5	88	30	17	20	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55598640--55598685	20	2.3	20	88	0	65	10	28	13	47	1.76
55598653--55598717	20	3.2	20	76	8	58	13	30	15	40	1.86
55601360--55601402	17	2.6	16	82	13	52	46	4	25	23	1.71
55606020--55606063	21	2.0	23	87	12	67	27	9	13	50	1.72
55612565--55612607	17	2.6	16	82	13	52	46	4	25	23	1.71
55612672--55612715	21	2.0	23	87	12	67	27	9	13	50	1.72
55614369--55614428	30	2.0	30	100	0	120	46	16	10	26	1.78
55631240--55631484	46	5.4	46	92	1	388	33	15	24	27	1.95
55633609--55633657	15	3.3	15	88	5	82	48	6	0	44	1.27
55633609--55633664	14	3.9	14	81	6	67	46	8	0	44	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208