genome.fa.s18.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  151  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49037640--49037945	40	7.7	40	90	1	470	26	28	22	23	1.99
49039160--49039238	37	2.1	37	88	0	113	25	32	17	24	1.97
49039357--49040396	47	21.9	47	96	1	1819	29	30	8	31	1.87
49039357--49040396	190	5.5	190	96	1	1854	29	30	8	31	1.87
49043884--49043935	26	2.0	26	100	0	104	38	11	7	42	1.70
49044978--49045174	50	3.8	50	81	5	216	27	21	28	22	1.99
49047107--49047248	75	1.9	75	97	0	266	16	23	19	40	1.91
49047251--49047280	12	2.4	13	94	5	53	20	6	6	66	1.38
49050936--49051149	104	2.0	104	99	0	419	44	12	21	21	1.84
49054262--49054309	24	2.0	25	83	4	62	33	8	25	33	1.86
49056347--49056393	24	1.9	25	82	4	60	34	4	27	34	1.77
49062622--49062673	26	2.0	26	92	7	88	36	9	7	46	1.66
49069735--49069771	11	3.3	11	92	3	56	54	16	24	5	1.63
49073266--49073315	26	1.9	26	91	0	82	36	12	8	44	1.71
49075379--49075430	26	2.0	26	96	0	95	38	13	7	40	1.73
49076435--49076641	40	5.2	40	80	0	252	27	28	21	23	1.99
49076450--49076640	80	2.4	80	99	0	373	25	28	21	24	1.99
49094102--49094153	26	2.0	26	96	0	95	38	13	7	40	1.73
49095174--49095225	26	2.0	26	92	0	86	38	15	7	38	1.76
49102860--49102911	26	2.0	26	84	0	68	40	13	7	38	1.73
49104604--49104655	26	2.0	26	92	0	86	36	13	9	40	1.77
49107800--49107851	26	2.0	26	92	0	86	36	13	9	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49114047--49114098	26	2.0	26	88	7	79	36	7	7	48	1.61
49118240--49118291	26	2.0	26	96	0	95	38	11	9	40	1.74
49120359--49120410	26	2.0	26	96	0	95	38	11	9	40	1.74
49122475--49122526	26	2.0	26	96	0	95	38	11	9	40	1.74
49124581--49124632	26	2.0	26	96	0	95	38	11	9	40	1.74
49126689--49126740	26	2.0	26	96	0	95	36	13	7	42	1.73
49127557--49127608	26	2.0	26	92	0	86	40	11	7	40	1.70
49131719--49131771	26	2.1	25	92	3	88	41	9	9	39	1.70
49133808--49133858	25	2.0	26	96	3	95	37	11	7	43	1.71
49135890--49135939	25	2.0	25	92	7	84	36	12	8	44	1.71
49137977--49138028	26	2.0	26	92	0	86	40	13	5	40	1.68
49139674--49139710	19	1.9	19	88	0	56	48	5	0	45	1.25
49140487--49140530	20	2.1	21	88	12	65	52	15	2	29	1.55
49141166--49141229	19	3.4	19	64	23	53	18	14	6	60	1.54
49141166--49141247	38	2.2	38	93	0	137	20	14	8	56	1.65
49150735--49150814	3	26.7	3	100	0	160	0	0	32	67	0.91
49153807--49153844	3	12.7	3	100	0	76	34	0	0	65	0.93
49156497--49156539	22	1.9	22	85	4	59	58	2	0	39	1.11
49161889--49161984	48	2.0	48	100	0	192	35	22	8	33	1.84
49165347--49165392	24	1.9	24	81	0	56	17	47	0	34	1.48
49165373--49165429	18	3.2	18	79	0	69	19	50	3	26	1.63
49165379--49165436	24	2.4	24	82	0	62	18	51	3	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49170578--49170668	2	45.5	2	100	0	182	0	49	0	50	1.00
49171094--49171118	9	2.8	9	100	0	50	64	0	12	24	1.27
49171485--49171681	98	2.0	98	91	2	315	30	9	23	36	1.87
49176612--49176751	40	3.5	40	79	6	151	32	25	16	26	1.96
49176617--49176752	37	3.5	40	77	9	136	33	25	15	25	1.95
49176617--49176769	78	2.0	78	85	5	211	35	24	15	24	1.94
49177622--49177652	16	2.0	15	93	6	53	0	29	0	70	0.87
49183802--49183841	21	1.9	21	84	0	53	42	2	2	52	1.28
49188986--49189016	8	3.9	8	100	0	62	48	12	0	38	1.42
49189310--49189379	29	2.5	27	79	9	77	64	0	1	34	1.03
49206644--49206752	43	2.6	43	84	5	143	27	18	27	26	1.98
49209324--49209348	5	5.0	5	100	0	50	0	40	0	60	0.97
49214855--49214896	11	3.8	11	80	0	57	23	16	9	50	1.75
49214912--49214946	17	1.9	19	88	11	56	20	2	11	65	1.37
49228648--49228731	25	3.4	25	67	6	62	35	19	21	23	1.96
49228779--49228862	26	3.3	26	80	14	95	34	20	27	17	1.95
49230339--49230457	59	2.0	59	90	0	184	39	19	20	21	1.93
49241991--49242053	18	3.4	18	73	4	72	39	3	6	50	1.44
49241979--49242053	37	2.0	37	100	0	150	37	5	8	49	1.55
49241979--49242037	19	3.2	19	70	4	66	33	6	8	50	1.59
49249642--49249808	58	2.9	57	77	7	149	47	7	6	38	1.57
49249682--49249792	58	1.9	59	85	5	154	46	9	6	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49251728--49251753	10	2.6	10	100	0	52	76	0	0	23	0.78
49251759--49251797	20	2.0	20	85	5	53	64	2	2	30	1.21
49252052--49252126	32	2.3	32	88	0	105	29	21	16	33	1.95
49254892--49254923	16	2.0	16	93	0	55	25	15	0	59	1.36
49258466--49258509	22	2.0	22	86	4	63	45	6	11	36	1.67
49259828--49259874	12	3.8	13	77	11	62	42	4	0	53	1.20
49259826--49259874	25	2.0	25	92	8	82	40	8	0	51	1.32
49273133--49273310	27	6.6	27	84	3	205	29	28	15	26	1.96
49273154--49273309	82	1.9	81	88	3	233	29	28	15	26	1.96
49273791--49273816	12	2.2	12	100	0	52	42	0	7	50	1.31
49276791--49276982	40	4.8	40	80	6	185	25	20	27	26	1.99
49276845--49277008	79	2.1	79	82	6	199	26	19	26	26	1.99
49284645--49284868	40	5.7	40	84	5	269	25	22	26	26	2.00
49284683--49284891	80	2.6	79	82	7	221	26	21	26	25	1.99
49299909--49300074	46	3.6	46	75	17	164	47	7	4	40	1.50
49299914--49300082	53	3.4	52	70	24	157	47	6	4	41	1.48
49299948--49299998	16	2.8	19	67	27	56	50	11	0	37	1.39
49299913--49300099	93	2.0	94	93	2	322	47	6	5	40	1.53
49301702--49301764	25	2.7	22	73	20	56	46	1	4	47	1.33
49301783--49301827	23	2.0	23	86	8	65	28	0	4	66	1.11
49304501--49304552	23	2.3	23	79	0	59	34	7	30	26	1.85
49308051--49308079	14	2.1	14	100	0	58	27	44	0	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49308076--49308116	21	2.0	20	85	4	55	41	36	0	21	1.54
49308348--49308493	7	20.6	7	70	10	73	47	32	1	18	1.57
49308704--49308784	41	2.0	41	97	0	153	29	28	22	19	1.98
49308848--49308973	40	3.2	39	83	6	146	21	24	22	31	1.98
49313553--49313636	35	2.4	35	85	0	114	41	33	10	14	1.80
49317480--49317512	16	2.0	17	88	5	50	45	0	6	48	1.27
49320403--49320455	18	2.9	18	83	5	54	41	3	18	35	1.69
49322617--49322694	20	3.9	20	72	0	75	34	17	34	12	1.88
49325124--49325155	8	4.0	8	91	0	55	37	3	0	59	1.13
49325124--49325154	16	1.9	16	100	0	62	38	3	0	58	1.15
49326300--49326353	22	2.5	22	84	3	65	14	22	18	44	1.86
49328789--49328852	29	2.2	29	83	8	78	32	6	4	56	1.45
49335819--49335948	32	4.3	31	72	22	107	22	13	13	50	1.76
49335937--49336007	31	2.4	31	83	9	85	18	14	15	52	1.75
49340372--49340413	21	2.0	21	85	0	57	38	0	19	42	1.51
49340768--49340969	25	8.2	24	73	9	122	18	28	20	33	1.96
49340778--49340941	24	6.7	24	73	8	116	17	27	20	34	1.95
49340768--49340941	49	3.5	50	74	8	133	17	28	20	33	1.95
49348237--49348299	30	2.1	30	93	0	108	57	15	4	22	1.57
49348333--49348359	14	1.9	14	100	0	54	59	14	11	14	1.62
49350302--49350336	12	2.8	12	91	4	52	60	0	8	31	1.27
49351795--49351984	98	1.9	97	89	3	292	31	21	13	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49351892--49352222	175	1.9	175	89	3	515	27	21	18	32	1.97
49351893--49352617	44	16.6	44	72	13	345	27	21	19	30	1.98
49351936--49352617	221	3.1	216	84	7	873	27	22	19	30	1.98
49352332--49352617	87	3.4	82	74	13	238	27	22	20	29	1.99
49369290--49369415	28	4.5	28	90	2	182	32	26	12	27	1.93
49369289--49369415	55	2.3	57	87	2	186	32	27	12	27	1.93
49369862--49369888	12	2.2	12	100	0	54	40	0	7	51	1.30
49383665--49384066	31	13.1	30	71	10	249	42	21	7	28	1.81
49383665--49384066	93	4.4	92	76	6	377	42	21	7	28	1.81
49383649--49384065	184	2.3	184	92	0	708	42	21	7	27	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208