genome.fa.s18.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  165  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53357364--53357408	8	5.1	8	82	17	54	28	0	0	71	0.87
53357349--53357409	10	6.4	10	77	11	74	31	0	0	68	0.89
53357426--53357482	26	2.2	26	81	9	64	29	1	5	63	1.27
53357951--53357988	18	2.1	18	90	0	58	65	0	2	31	1.06
53358343--53358432	31	2.9	31	82	12	114	45	2	20	32	1.63
53362178--53362227	23	2.2	23	92	0	82	42	24	18	16	1.89
53362346--53362410	26	2.5	26	85	7	80	35	20	20	24	1.96
53364751--53364924	64	2.8	65	82	8	209	40	17	7	34	1.78
53365003--53365045	21	2.0	22	86	13	63	41	16	0	41	1.48
53372579--53372759	64	2.9	65	81	8	223	40	17	7	34	1.77
53372831--53372873	21	2.0	22	86	13	63	41	16	0	41	1.48
53373451--53373504	28	1.9	28	85	7	74	35	16	3	44	1.66
53378289--53378373	43	2.0	44	86	9	122	45	3	4	45	1.41
53378428--53378478	26	2.0	26	84	0	66	54	0	1	43	1.11
53378980--53379022	8	5.1	8	79	20	52	27	0	0	72	0.85
53378965--53379023	9	6.4	10	75	13	56	30	0	0	69	0.89
53378964--53379021	26	2.2	27	87	3	82	32	0	0	67	0.91
53378965--53379023	10	6.4	9	75	13	50	30	0	0	69	0.89
53379041--53379097	26	2.2	26	81	9	64	29	1	5	63	1.27
53379961--53380050	31	2.9	31	82	12	114	45	2	20	32	1.63
53381011--53381058	21	2.3	20	75	10	51	54	6	0	39	1.26
53382237--53382313	29	2.5	31	87	4	104	25	14	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53384342--53384394	26	2.1	25	85	3	70	39	22	15	22	1.91
53385675--53385739	26	2.5	26	85	2	78	38	20	18	23	1.93
53386611--53386655	6	7.0	6	85	14	63	15	0	2	82	0.77
53387254--53387311	3	19.3	3	82	7	73	27	3	0	68	1.05
53387723--53387766	23	1.9	23	82	17	56	25	11	2	61	1.41
53387737--53387783	19	2.5	20	86	6	62	25	8	6	59	1.50
53387751--53387792	19	2.2	20	82	4	50	28	7	11	52	1.64
53390372--53390456	44	1.9	44	83	4	109	40	21	17	21	1.92
53392524--53392608	43	2.0	44	86	9	122	45	3	4	45	1.41
53393219--53393253	8	4.1	8	86	13	52	28	0	0	71	0.86
53393203--53393253	18	2.8	18	87	3	66	33	0	0	66	0.92
53393204--53393254	10	5.4	10	75	11	54	31	0	0	68	0.90
53393271--53393327	26	2.2	26	81	9	64	29	1	5	63	1.27
53394189--53394278	31	2.9	31	82	12	114	45	2	20	32	1.63
53398026--53398075	23	2.2	23	92	0	82	42	24	18	16	1.89
53398194--53398258	26	2.5	26	85	7	80	35	20	20	24	1.96
53400598--53400771	64	2.8	65	82	8	209	40	17	7	34	1.78
53400850--53400892	21	2.0	22	86	13	63	41	16	0	41	1.48
53408407--53408587	64	2.9	65	81	8	223	40	17	7	34	1.77
53408661--53408703	21	2.0	22	86	13	63	41	16	0	41	1.48
53409281--53409334	28	1.9	28	85	7	74	35	16	3	44	1.66
53414092--53414176	43	2.0	43	84	9	111	44	3	4	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53414773--53414824	10	5.4	10	79	6	63	30	0	0	69	0.89
53414841--53414898	26	2.3	26	82	8	66	31	1	5	62	1.27
53415763--53415852	31	2.9	31	82	12	114	45	2	20	32	1.63
53418045--53418121	29	2.5	31	87	4	104	25	14	12	46	1.80
53419466--53419542	29	2.5	31	87	4	104	46	12	14	25	1.80
53423171--53423199	12	2.3	13	94	5	51	3	0	6	89	0.57
53423199--53423239	14	3.0	14	85	7	57	73	0	2	24	0.96
53423244--53423374	28	4.5	29	83	7	142	32	19	2	45	1.62
53423256--53423373	57	2.1	56	85	7	157	31	20	2	45	1.64
53423739--53423810	7	11.6	7	73	20	54	73	0	26	0	0.83
53423748--53423819	24	3.0	24	93	4	126	72	0	27	0	0.85
53423893--53423955	15	3.9	16	78	12	67	77	1	20	0	0.85
53423891--53423959	19	3.4	20	82	9	86	78	1	20	0	0.83
53428427--53428604	93	1.9	92	86	3	250	40	3	15	41	1.63
53428643--53429059	126	3.3	125	86	3	561	34	17	19	29	1.94
53432047--53432258	116	1.8	117	95	1	390	45	8	3	42	1.51
53432047--53432238	61	3.2	61	72	19	206	44	8	3	43	1.52
53432217--53432301	30	2.8	29	76	20	100	45	7	4	42	1.52
53432217--53432318	34	3.1	34	81	15	128	49	6	4	39	1.51
53432440--53432483	21	2.1	21	86	0	61	6	25	40	27	1.80
53434508--53434561	18	2.9	18	75	5	63	61	0	7	31	1.24
53434508--53434561	19	2.9	18	74	15	56	61	0	7	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53439667--53439695	9	3.2	9	100	0	58	41	0	0	58	0.98
53443473--53443849	44	8.4	44	71	8	105	27	20	20	31	1.98
53443473--53443962	227	2.2	227	89	0	739	27	21	19	31	1.97
53443930--53443998	36	1.9	36	90	0	111	26	21	23	28	1.99
53443699--53444220	263	2.0	263	91	1	850	27	21	20	30	1.98
53443962--53444972	227	4.5	227	89	0	1497	27	21	19	30	1.98
53443493--53444452	490	2.0	490	90	1	1521	27	21	19	31	1.98
53443962--53444925	44	21.3	44	69	14	419	27	21	19	31	1.98
53443962--53444925	453	2.1	454	91	0	1518	27	21	19	31	1.98
53444411--53444744	182	1.8	182	80	5	406	28	20	20	30	1.98
53446423--53446479	6	9.8	6	75	21	50	3	1	10	84	0.82
53446422--53446480	7	8.9	7	76	14	54	3	1	10	84	0.80
53453565--53453604	15	3.0	13	83	16	55	60	2	0	37	1.11
53455582--53455615	3	11.3	3	87	0	50	58	2	2	35	1.28
53455582--53455637	15	3.7	15	79	9	60	57	3	8	30	1.47
53460529--53460583	28	2.0	27	82	10	67	34	0	0	65	0.93
53460557--53460581	6	4.2	6	100	0	50	32	0	0	68	0.90
53462308--53462347	20	2.0	20	95	0	71	25	7	5	62	1.42
53477449--53477506	26	2.2	26	84	0	71	29	17	13	39	1.88
53477631--53477674	23	1.9	23	95	0	79	11	20	25	43	1.85
53478819--53478876	26	2.2	26	78	0	62	25	15	18	39	1.91
53479253--53479291	12	3.2	12	77	0	51	7	15	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53481147--53481206	26	2.3	26	82	2	68	25	21	15	38	1.92
53487860--53487910	21	2.5	20	84	12	61	52	29	3	13	1.58
53488901--53488941	18	2.3	19	83	12	59	24	9	0	65	1.22
53488964--53489013	3	16.7	3	85	0	64	32	4	2	62	1.25
53491490--53491527	13	2.8	13	85	14	51	39	0	0	60	0.97
53492474--53492512	18	2.2	18	85	0	51	30	33	0	35	1.58
53505434--53505677	46	5.3	46	87	1	346	41	17	14	27	1.88
53505444--53505677	22	10.2	23	73	16	175	41	17	14	27	1.87
53505434--53505677	91	2.7	92	87	1	346	41	17	14	27	1.88
53505994--53506031	18	2.1	18	100	0	76	47	15	15	21	1.82
53512084--53512150	3	23.3	3	75	22	56	29	4	1	64	1.22
53515593--53515633	18	2.3	18	84	12	57	31	0	4	63	1.15
53519963--53520010	19	2.4	21	83	10	66	45	14	0	39	1.45
53520158--53520554	193	2.1	190	84	5	514	48	4	2	44	1.38
53520595--53520631	15	2.2	18	81	18	53	59	0	2	37	1.12
53520893--53520980	44	2.0	44	95	0	158	36	17	14	31	1.90
53522162--53522239	31	2.5	31	83	2	95	46	3	19	30	1.68
53528363--53528473	40	2.8	39	84	4	141	34	17	26	22	1.96
53532852--53532960	27	4.0	28	80	4	118	44	19	16	20	1.87
53533124--53533177	26	2.1	26	96	0	99	14	20	27	37	1.92
53533263--53533330	28	2.4	28	87	0	100	26	27	19	26	1.99
53535668--53535713	13	3.4	13	87	6	56	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53535667--53535714	14	3.4	14	83	13	55	0	18	0	81	0.70
53535676--53535711	18	1.9	19	88	5	56	0	19	0	80	0.71
53536397--53536455	29	2.1	28	87	3	82	33	10	20	35	1.86
53536723--53537827	75	14.6	75	86	3	1378	33	20	18	28	1.96
53536869--53537832	452	2.1	451	90	1	1493	33	20	17	28	1.95
53549864--53550241	47	8.1	47	93	0	580	26	31	10	31	1.90
53549996--53550073	25	3.2	25	63	17	65	29	26	7	35	1.84
53550090--53550167	25	3.2	25	63	23	67	29	34	7	28	1.85
53554568--53554989	40	10.6	40	91	3	656	24	27	22	25	2.00
53556959--53557336	47	8.1	47	93	0	580	26	31	10	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208