genome.fa.s18.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  183  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57377406--57377431	5	5.2	5	100	0	52	38	0	0	61	0.96
57379530--57379580	25	2.1	25	85	7	70	43	5	1	49	1.38
57379530--57379580	24	2.1	24	82	13	61	43	5	1	49	1.38
57383696--57383724	2	14.5	2	100	0	58	0	48	0	51	1.00
57387120--57387306	40	4.6	40	89	4	277	59	0	3	36	1.15
57387123--57387301	9	18.0	9	66	23	51	59	0	3	36	1.14
57387196--57387228	16	2.0	17	88	5	50	63	0	0	36	0.95
57387120--57387251	11	12.9	11	72	20	83	58	0	3	38	1.14
57388039--57388081	20	2.3	19	84	11	54	32	0	2	65	1.06
57388583--57388629	20	2.4	19	82	3	58	31	6	2	59	1.34
57392895--57393036	71	2.0	71	100	0	284	47	9	14	28	1.75
57400507--57400545	7	5.7	7	90	6	53	79	0	0	20	0.73
57400505--57400545	13	3.1	13	82	6	55	75	0	0	24	0.80
57407545--57407616	27	2.7	27	83	10	85	26	2	4	66	1.23
57407545--57407640	28	3.6	27	79	6	79	32	3	3	61	1.27
57407975--57407999	8	3.1	8	100	0	50	12	52	12	24	1.72
57408989--57409059	3	23.3	3	74	8	63	30	1	5	61	1.27
57409001--57409062	23	2.8	22	87	4	81	32	1	8	58	1.37
57408996--57409070	23	3.2	23	80	10	64	32	2	9	56	1.45
57409087--57409134	24	2.0	24	84	12	62	29	4	0	66	1.10
57411153--57411190	3	13.0	3	88	5	60	34	0	2	63	1.09
57412915--57412980	33	2.0	33	96	0	123	30	7	9	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57415211--57415257	25	1.9	24	83	12	60	65	6	0	27	1.16
57417964--57418003	21	1.9	21	100	0	80	20	25	17	37	1.94
57427007--57427059	2	26.5	2	96	0	97	49	0	50	0	1.00
57428542--57428615	34	2.1	35	85	9	98	37	20	9	32	1.85
57428786--57428922	41	3.3	40	83	8	168	26	27	18	27	1.98
57429514--57429556	19	2.3	18	80	11	50	51	9	2	37	1.47
57429551--57429919	78	4.8	78	85	3	325	43	15	4	37	1.66
57429641--57429918	78	3.6	78	93	0	468	43	14	4	38	1.65
57436739--57436782	2	22.0	2	100	0	88	50	0	50	0	1.00
57437278--57437352	25	3.0	25	98	0	141	41	0	16	42	1.47
57438868--57438912	2	22.5	2	100	0	90	51	0	48	0	1.00
57439237--57439265	2	14.5	2	100	0	58	51	48	0	0	1.00
57439708--57439776	32	2.1	34	86	5	97	24	24	24	26	2.00
57443416--57443457	21	2.0	21	100	0	84	38	4	19	38	1.73
57443473--57443544	36	2.0	36	89	10	112	40	8	13	37	1.75
57444426--57444454	9	3.0	10	90	10	51	20	20	0	58	1.39
57447045--57447683	59	10.8	59	88	5	893	45	3	5	44	1.44
57447346--57447383	19	2.0	20	89	5	60	52	5	0	42	1.24
57447045--57447683	114	5.4	115	87	5	877	45	3	5	44	1.44
57447426--57447641	55	3.9	53	80	10	182	44	4	6	44	1.49
57447515--57447556	19	2.2	19	86	4	57	45	0	7	47	1.30
57461326--57461364	17	2.3	17	86	8	53	33	15	7	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57461579--57462006	17	25.0	18	68	15	169	30	13	11	44	1.79
57461585--57461754	89	1.9	89	83	4	218	30	15	11	42	1.83
57461819--57461939	18	6.8	19	70	13	71	34	12	10	42	1.77
57473722--57473889	66	2.5	66	87	3	223	29	14	23	32	1.95
57473907--57474669	73	10.5	74	75	10	464	31	16	19	32	1.94
57473902--57474669	72	10.6	71	75	13	493	31	16	19	32	1.94
57473907--57474329	75	5.8	73	83	7	414	32	15	19	32	1.93
57476764--57476819	17	3.2	17	74	23	53	35	14	10	39	1.81
57476764--57476821	19	3.2	18	73	24	59	34	15	10	39	1.81
57476796--57476846	26	2.0	25	84	7	66	23	15	17	43	1.88
57476933--57477342	17	24.8	18	70	18	182	29	13	11	45	1.80
57477167--57477343	33	5.5	33	74	11	134	28	11	12	46	1.77
57477116--57477258	61	2.3	63	81	9	154	30	11	11	46	1.77
57497242--57497415	69	2.5	70	86	3	228	28	14	23	33	1.94
57497429--57498212	72	10.6	72	75	14	546	31	16	18	33	1.93
57497429--57498212	144	5.3	146	75	15	619	31	16	18	33	1.93
57497428--57498210	220	3.6	208	73	15	525	31	16	18	33	1.93
57497959--57498211	73	3.5	72	91	3	391	32	17	18	30	1.95
57500232--57500270	17	2.3	17	86	8	53	33	15	7	43	1.75
57500318--57500374	18	3.2	18	72	5	53	33	15	10	40	1.82
57500318--57500372	17	3.2	17	74	25	53	34	14	10	40	1.81
57500349--57500399	26	2.0	25	84	7	66	23	15	17	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57500484--57500912	17	25.0	18	69	16	207	30	13	11	44	1.79
57500488--57500658	88	1.9	88	83	4	220	30	15	12	42	1.83
57500786--57500830	19	2.4	18	82	10	54	44	8	11	35	1.71
57500725--57500925	88	2.3	86	84	8	246	30	11	11	45	1.76
57500743--57500935	105	1.8	104	81	15	236	32	11	10	45	1.75
57516053--57516094	18	2.4	17	77	14	50	76	2	0	21	0.90
57516053--57516094	13	3.1	14	83	10	52	76	2	0	21	0.90
57517605--57517657	17	3.4	17	65	24	53	66	3	3	26	1.26
57528872--57528901	15	2.1	14	93	6	51	50	0	0	50	1.00
57530283--57530357	29	2.6	27	76	12	69	17	0	29	53	1.44
57534514--57534557	22	2.0	22	100	0	88	31	9	13	45	1.75
57535203--57535255	19	3.0	17	78	10	61	35	9	18	35	1.84
57535227--57535271	23	2.0	23	91	4	74	37	4	17	40	1.70
57535237--57535281	23	2.0	23	86	4	65	33	4	15	46	1.66
57535712--57535751	3	13.3	3	84	10	55	30	2	0	67	1.04
57535696--57535750	15	3.7	15	74	16	53	29	1	1	67	1.11
57535698--57535749	12	4.1	12	80	14	52	26	1	1	69	1.10
57554207--57554239	3	11.0	3	100	0	66	33	0	33	33	1.58
57554614--57554666	26	2.0	28	81	7	65	20	22	11	45	1.83
57559200--57559253	19	2.9	18	73	10	56	53	1	0	44	1.11
57570205--57570247	19	2.3	19	84	8	52	23	30	0	46	1.52
57576997--57577053	20	2.8	20	75	0	60	54	12	5	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57582684--57582723	19	2.1	19	86	9	55	40	20	0	40	1.52
57588900--57588949	25	2.0	25	96	0	91	30	26	4	40	1.74
57595213--57595267	22	2.5	22	96	0	101	29	16	21	32	1.95
57595565--57595660	38	2.6	38	86	1	131	27	13	18	40	1.88
57596615--57596665	25	2.0	25	85	7	68	47	3	1	47	1.32
57601233--57601285	26	2.0	27	88	7	81	16	22	13	47	1.82
57605678--57605726	16	3.1	16	85	5	55	18	4	6	71	1.23
57606086--57606133	22	2.2	22	100	0	96	35	33	8	22	1.84
57613205--57613805	76	7.9	76	84	1	661	35	19	16	28	1.94
57613205--57613805	227	2.7	227	84	2	726	35	19	16	28	1.94
57614683--57614727	15	3.1	15	87	3	65	6	11	13	68	1.37
57614688--57614729	14	2.9	14	89	3	66	7	11	9	71	1.31
57619862--57619891	15	2.1	15	93	6	53	50	0	0	50	1.00
57622716--57622755	15	2.7	15	88	3	55	27	0	2	70	1.01
57626010--57626103	40	2.3	40	87	3	136	24	15	22	37	1.93
57626871--57626933	28	2.2	28	97	0	117	44	12	14	28	1.82
57627260--57627296	19	2.0	18	89	5	56	62	2	2	32	1.23
57627647--57627680	9	3.8	9	92	0	50	58	2	5	32	1.37
57628383--57628419	20	1.9	18	89	10	56	67	8	18	5	1.36
57629002--57629055	7	7.6	7	77	4	54	22	0	29	48	1.51
57629002--57629044	22	2.0	22	90	0	68	20	0	32	46	1.51
57629116--57629148	16	2.1	16	88	11	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57630028--57630074	21	2.1	23	88	7	71	29	2	0	68	1.02
57630034--57630089	21	2.6	21	78	13	60	39	1	0	58	1.08
57634977--57635023	20	2.3	20	86	13	62	34	2	4	59	1.29
57639341--57639390	18	2.8	17	78	6	55	62	0	4	34	1.14
57646380--57646501	43	2.8	43	81	2	145	30	27	19	22	1.98
57651215--57651244	7	4.3	7	100	0	60	33	53	0	13	1.40
57651763--57651834	7	10.3	7	77	5	56	37	38	0	23	1.55
57651783--57651834	14	3.7	14	86	0	68	32	40	0	26	1.57
57651815--57651898	14	5.9	14	73	5	62	42	28	3	25	1.71
57651838--57651913	21	3.6	21	70	10	64	47	23	3	25	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208