genome.fa.s18.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  207  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63693707--63693745	20	2.0	20	94	0	69	48	2	7	41	1.45
63697133--63697162	16	1.9	16	93	6	53	40	20	13	26	1.89
63697592--63697691	3	32.3	3	78	9	94	61	4	30	5	1.36
63698728--63698756	3	9.7	3	100	0	58	68	0	0	31	0.89
63703230--63703291	18	3.6	18	81	16	78	33	6	0	59	1.23
63703250--63703299	20	2.5	20	87	9	68	34	8	0	58	1.28
63711788--63712174	87	4.5	87	92	0	607	30	21	23	24	1.99
63711804--63711941	43	3.2	42	65	11	109	26	20	24	28	1.99
63711933--63712071	43	3.2	42	62	14	102	31	24	19	24	1.98
63711788--63712174	173	2.2	173	90	0	605	30	21	23	24	1.99
63712162--63712714	44	12.4	44	70	11	205	30	19	22	27	1.98
63712369--63712529	87	1.9	87	84	2	216	31	21	21	25	1.98
63712592--63712707	46	2.6	44	82	5	126	30	20	19	29	1.97
63712592--63712757	44	3.7	44	76	7	124	31	18	20	29	1.96
63714458--63714506	18	2.8	18	79	14	66	34	8	0	57	1.29
63714442--63714506	35	1.9	35	84	12	91	35	7	0	56	1.28
63716786--63716835	26	1.9	27	88	8	77	62	6	4	28	1.37
63719167--63719193	6	4.5	6	100	0	54	85	0	0	14	0.61
63726495--63726535	2	20.5	2	100	0	82	48	0	51	0	1.00
63726772--63726807	2	18.0	2	100	0	72	0	50	0	50	1.00
63727010--63727097	38	2.3	38	82	3	97	28	14	12	44	1.82
63727704--63727764	15	4.1	14	75	8	59	42	1	4	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63730251--63730416	24	6.8	24	66	16	65	18	25	20	36	1.95
63736322--63736366	16	2.8	16	82	0	63	66	4	0	28	1.11
63738516--63738574	24	2.4	25	80	8	77	52	6	37	3	1.45
63738590--63738639	21	2.4	21	93	0	82	44	0	42	14	1.44
63741196--63741263	15	4.5	15	84	0	82	57	1	39	1	1.17
63741214--63741266	27	2.0	27	85	7	72	60	1	35	1	1.19
63753322--63753362	21	2.0	21	90	0	64	19	29	21	29	1.98
63760902--63760966	24	2.7	23	71	15	60	43	0	7	49	1.31
63764390--63764426	16	2.3	16	85	0	56	40	5	10	43	1.63
63766260--63766354	44	2.1	46	84	3	122	36	6	20	36	1.78
63778568--63778602	18	2.0	17	88	5	52	54	0	0	45	0.99
63778455--63778771	157	2.0	157	96	0	580	44	3	4	47	1.41
63778725--63778759	18	2.0	17	88	5	52	54	0	0	45	0.99
63780716--63780752	11	3.6	11	86	13	53	43	0	0	56	0.99
63780714--63780752	21	2.0	21	90	10	64	43	0	0	56	0.99
63785934--63785970	16	2.3	16	85	0	56	40	5	10	43	1.63
63791339--63791412	30	2.5	30	84	0	103	27	43	6	22	1.78
63795968--63796043	36	2.1	36	82	4	91	56	9	5	28	1.52
63799333--63799388	16	3.7	15	76	9	53	26	0	17	55	1.43
63803080--63803146	33	2.0	33	100	0	134	46	23	0	29	1.53
63804929--63804963	16	2.1	17	89	5	54	20	0	17	62	1.32
63805513--63805546	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63808669--63808697	4	7.5	4	92	7	51	75	0	0	24	0.80
63819434--63819658	113	2.0	113	100	0	450	32	12	17	36	1.88
63830151--63830241	45	2.0	45	85	2	121	37	28	6	27	1.82
63830222--63830274	16	3.2	16	94	5	97	37	37	0	24	1.56
63836029--63836075	23	2.0	23	87	0	67	27	14	12	44	1.82
63837079--63837115	7	5.3	7	100	0	74	27	0	16	56	1.40
63842722--63842781	27	2.2	27	90	0	93	30	1	5	63	1.25
63845259--63845292	17	1.9	18	88	5	52	38	26	14	20	1.91
63845284--63845335	18	2.9	18	80	11	63	36	21	21	21	1.95
63845321--63845351	16	1.9	16	93	0	53	29	19	22	29	1.98
63845366--63845400	18	1.9	18	100	0	70	28	25	5	40	1.78
63845355--63845379	10	2.5	10	100	0	50	28	20	0	52	1.47
63852359--63852383	7	3.6	7	100	0	50	24	0	0	76	0.80
63859109--63859151	6	7.2	6	97	0	77	37	0	13	48	1.43
63861227--63861365	45	3.1	45	90	0	215	39	20	20	19	1.93
63861265--63861392	45	3.2	39	85	7	132	39	21	21	18	1.93
63864490--63864533	16	2.7	17	83	16	58	29	0	2	68	1.02
63864547--63864585	17	2.2	19	81	9	55	53	2	0	43	1.14
63864548--63864585	18	2.2	18	90	4	60	52	2	0	44	1.14
63869410--63869441	9	3.6	9	100	0	64	34	12	9	43	1.75
63871176--63871211	2	18.0	2	100	0	72	0	50	0	50	1.00
63874124--63874164	20	2.1	19	86	13	57	41	2	2	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63874224--63874268	23	1.9	24	86	4	65	53	0	4	42	1.21
63875066--63875127	31	2.0	32	87	3	90	30	12	6	50	1.66
63880123--63880201	31	2.6	31	84	6	99	37	7	11	43	1.69
63882198--63882266	34	2.0	34	94	0	120	46	20	8	24	1.79
63883048--63883109	31	2.0	31	96	0	115	46	12	14	25	1.80
63889886--63889919	17	2.1	17	88	5	52	55	5	29	8	1.54
63893077--63893162	22	3.9	22	76	8	93	56	0	2	40	1.12
63893493--63893557	26	2.4	27	92	7	105	40	10	0	49	1.38
63893561--63893590	13	2.4	12	94	5	51	86	13	0	0	0.57
63894249--63894312	19	3.4	19	76	4	76	51	3	10	34	1.53
63894711--63894773	28	2.2	28	91	0	99	49	0	9	41	1.35
63899097--63899136	19	2.1	19	85	0	53	50	12	10	27	1.72
63903086--63903118	10	3.4	10	87	8	50	78	0	21	0	0.75
63906553--63906585	9	3.7	9	91	0	57	51	3	0	45	1.16
63914954--63915043	46	2.0	46	84	0	117	34	20	15	30	1.93
63934607--63934640	17	2.0	17	100	0	68	52	0	5	41	1.25
63934602--63934658	21	2.8	20	74	15	53	54	0	3	42	1.17
63943108--63943678	286	2.0	286	97	0	1079	35	16	24	23	1.95
63948683--63948769	42	2.1	42	80	8	97	24	19	20	35	1.96
63949213--63949244	16	2.0	16	93	0	55	15	25	0	59	1.36
63957584--63957618	4	8.8	4	93	0	61	28	0	45	25	1.54
63958092--63958175	12	6.9	13	94	4	81	50	0	13	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63958106--63958181	6	12.7	6	100	0	152	50	0	15	34	1.45
63963693--63963723	16	2.0	16	93	6	55	38	0	0	61	0.96
63964102--63964133	6	5.3	6	100	0	64	0	50	0	50	1.00
63974072--63974106	18	2.0	18	88	5	54	51	0	0	48	1.00
63982468--63982505	19	2.1	19	90	5	60	42	0	2	55	1.14
63982911--63983287	191	2.0	187	88	4	551	38	15	9	36	1.80
63983419--63983520	27	3.6	27	79	12	91	62	0	3	32	1.20
63983399--63983528	28	4.8	28	75	11	101	63	1	3	31	1.19
63983823--63983876	19	2.8	18	75	10	54	33	0	1	64	1.04
63989485--63989522	14	2.7	14	87	0	58	50	26	0	23	1.50
63989546--63989595	20	2.5	20	90	0	73	22	10	36	32	1.87
63992983--63993059	38	2.0	38	94	0	136	42	11	12	32	1.80
63995078--63995121	23	1.9	23	86	9	63	70	4	6	18	1.27
63995091--63995134	18	2.4	18	88	7	63	72	4	9	13	1.24
63997920--63998220	46	6.3	48	84	8	357	34	14	21	28	1.93
63997854--63998209	98	3.6	98	96	0	631	34	14	21	28	1.94
63998184--63998292	37	3.0	37	89	2	168	34	16	22	25	1.95
63999093--63999156	21	3.0	22	72	9	69	18	18	25	37	1.94
64006004--64006059	20	2.8	21	81	8	62	14	7	3	75	1.16
64006024--64006085	8	7.4	8	76	5	52	14	3	3	79	0.99
64006146--64006214	32	2.1	33	89	7	106	36	0	4	59	1.17
64006154--64006219	12	5.8	12	81	16	70	37	0	6	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64006154--64006219	21	2.9	24	76	19	70	37	0	6	56	1.24
64006257--64006299	20	2.1	21	86	4	61	76	4	6	11	1.13
64009359--64009436	39	2.0	40	84	2	104	44	8	8	37	1.67
64010759--64010802	12	3.7	12	93	0	70	61	0	34	4	1.16
64012261--64012290	16	1.9	15	93	6	51	53	0	0	46	1.00
64017976--64018009	17	2.0	17	100	0	68	58	5	5	29	1.45
64018011--64018052	11	3.7	11	79	14	50	26	0	2	71	0.98
64026666--64026718	18	2.9	18	80	2	61	41	45	1	11	1.51
64026810--64026858	9	5.4	9	90	0	71	24	12	24	38	1.90
64042751--64042798	25	1.9	24	83	8	60	27	10	6	56	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208