genome.fa.s18.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  127  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41777556--41777653	46	2.2	45	92	1	160	50	7	6	36	1.55
41784786--41784847	29	2.1	29	100	0	124	19	4	22	53	1.64
41789468--41789526	26	2.2	26	75	3	64	37	16	10	35	1.83
41789704--41789729	10	2.6	10	100	0	52	92	7	0	0	0.39
41791797--41791856	28	2.1	29	84	9	79	61	3	0	35	1.12
41792144--41792302	84	1.9	84	85	1	221	36	6	11	45	1.67
41794063--41794170	46	2.3	46	95	3	191	33	26	14	25	1.95
41794625--41794682	24	2.4	24	74	5	64	25	22	15	36	1.94
41795669--41795728	20	3.0	20	80	11	79	3	16	0	80	0.85
41795672--41795742	13	5.8	12	81	15	76	1	14	0	84	0.69
41795672--41795742	7	10.4	7	79	11	69	1	14	0	84	0.69
41795672--41795739	8	8.6	8	78	18	72	1	14	0	83	0.71
41795678--41795742	20	3.2	20	82	6	78	1	13	0	84	0.69
41795672--41795742	26	2.6	28	84	6	85	1	14	0	84	0.69
41798037--41798070	12	2.8	12	81	0	50	8	23	23	44	1.81
41798212--41798258	19	2.5	20	86	6	62	42	10	21	25	1.85
41804137--41804172	18	2.0	18	100	0	72	38	16	5	38	1.72
41813013--41813200	50	3.8	49	78	4	187	25	17	26	30	1.97
41813017--41813202	101	1.8	101	83	0	246	25	16	26	31	1.97
41816882--41816914	15	2.1	16	88	5	50	9	0	15	75	1.03
41824343--41824381	20	2.0	20	84	0	51	28	33	17	20	1.96
41828499--41828551	20	2.5	22	81	6	65	39	13	11	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41831550--41831591	20	2.1	20	86	8	59	26	16	2	54	1.54
41835961--41835993	14	2.2	16	89	10	52	30	0	3	66	1.06
41839193--41839237	18	2.6	18	86	10	58	46	0	4	48	1.22
41842266--41842331	33	2.0	33	100	0	132	27	9	12	51	1.69
41850729--41850854	28	4.5	28	95	1	200	31	28	13	26	1.94
41853614--41853839	39	5.7	39	89	5	187	26	22	27	23	1.99
41853614--41853876	40	6.6	39	88	6	304	26	22	26	24	2.00
41853614--41853876	79	3.3	79	83	9	308	26	22	26	24	2.00
41853615--41853909	79	3.7	77	80	12	273	27	21	27	23	1.99
41867897--41867942	22	2.2	22	84	7	60	54	10	13	21	1.69
41868122--41868189	30	2.3	30	82	7	86	35	14	27	22	1.93
41868122--41868197	30	2.5	30	81	8	75	34	14	28	22	1.93
41873205--41873355	27	5.6	27	92	4	232	31	28	13	26	1.94
41873205--41873355	55	2.8	55	93	1	250	31	28	13	26	1.94
41880557--41880736	28	6.6	27	94	2	288	31	28	13	26	1.94
41880557--41880736	55	3.3	55	94	1	299	31	28	13	26	1.94
41880557--41880736	83	2.2	82	93	1	306	31	28	13	26	1.94
41888479--41888507	13	2.1	14	93	6	51	58	13	0	27	1.36
41888556--41888597	20	2.0	21	86	4	59	30	14	30	23	1.94
41897497--41897541	20	2.2	20	88	0	63	26	15	13	44	1.83
41898253--41898347	22	4.2	22	74	6	73	40	30	3	26	1.72
41898728--41898805	39	2.0	39	87	5	113	30	6	33	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41909965--41910115	28	5.4	28	91	1	205	32	28	13	25	1.93
41928489--41928914	47	9.1	47	92	0	683	27	30	9	32	1.88
41932183--41932315	70	1.9	70	96	0	248	27	26	11	34	1.91
41934208--41934252	21	2.3	18	85	11	54	17	26	0	55	1.42
41934361--41934392	15	2.1	16	94	5	57	6	21	0	71	1.07
41935241--41935301	26	2.3	27	86	13	83	11	9	3	75	1.16
41935347--41935388	11	3.5	12	90	6	59	14	2	7	76	1.10
41935347--41935376	11	2.7	11	100	0	60	13	0	6	80	0.91
41936532--41936668	70	2.0	70	95	0	247	26	26	13	34	1.93
41938253--41938359	26	4.1	26	78	4	117	35	22	20	21	1.96
41938549--41938907	27	13.3	27	83	2	384	21	16	19	42	1.89
41945404--41945450	19	2.5	19	82	6	60	68	12	0	19	1.21
41945859--41945964	26	4.1	26	81	3	117	36	25	18	18	1.94
41946174--41946394	27	8.2	27	74	8	157	23	14	18	43	1.87
41946356--41946431	37	2.1	37	87	0	107	21	11	25	42	1.86
41946409--41946527	27	4.4	27	80	8	118	23	16	16	42	1.88
41946330--41946459	64	2.0	64	82	2	154	20	14	22	42	1.88
41946308--41946485	91	2.0	91	88	0	266	21	14	20	43	1.88
41946393--41946527	54	2.5	53	80	9	130	22	16	18	42	1.89
41950669--41950695	14	1.9	14	100	0	54	44	22	7	25	1.79
41951172--41951208	9	4.1	9	86	13	58	45	10	10	32	1.74
41953751--41953912	29	5.6	29	82	2	182	21	25	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41953751--41953919	59	2.9	58	86	3	223	21	25	14	39	1.91
41953739--41953912	88	2.0	87	87	1	249	22	24	13	39	1.91
41962148--41962204	20	2.8	20	70	15	55	38	21	28	12	1.89
41967180--41967273	46	2.0	46	91	4	154	24	18	21	36	1.95
41968416--41968459	18	2.7	18	80	13	51	6	18	2	72	1.17
41970142--41970186	20	2.2	21	80	11	58	35	15	22	26	1.94
41977815--41977848	11	3.2	11	87	8	52	26	29	14	29	1.95
41980189--41980222	13	2.5	13	90	4	50	73	5	5	14	1.21
41988299--41988835	47	11.1	47	91	4	804	32	8	29	28	1.88
41988299--41988835	98	5.6	96	90	5	825	32	8	29	28	1.88
41988299--41988824	145	3.6	146	92	2	839	32	9	29	28	1.88
41988954--41989032	37	2.1	37	90	0	122	24	18	31	25	1.98
41992173--41992203	12	2.6	12	94	0	53	19	22	0	58	1.40
41992183--41992225	12	3.6	12	87	0	59	13	18	0	67	1.23
41994673--41994708	10	3.6	10	84	0	54	36	19	22	22	1.95
41996880--41996924	16	2.8	16	93	3	72	31	4	0	64	1.13
41998724--41998759	4	9.0	4	88	11	56	22	0	0	77	0.76
42001247--42001306	29	2.1	29	93	0	102	15	21	40	23	1.91
42001257--42001318	29	2.1	29	81	0	70	16	19	37	27	1.93
42004267--42004332	26	2.6	25	76	11	62	30	10	13	45	1.77
42006408--42006463	21	2.7	21	75	8	60	62	1	28	7	1.32
42012554--42012600	20	2.3	20	81	0	58	29	34	12	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42017189--42017245	21	2.7	21	81	13	71	31	5	31	31	1.80
42018791--42018821	11	2.8	11	95	0	53	77	3	9	9	1.10
42019891--42019938	21	2.3	20	79	10	53	70	0	20	8	1.12
42025276--42025352	10	7.9	9	84	13	91	33	14	29	22	1.93
42025282--42025352	20	3.5	20	85	14	110	33	14	29	22	1.93
42027289--42027339	20	2.5	20	87	0	66	11	27	19	41	1.86
42027547--42027571	7	3.6	7	100	0	50	32	12	16	40	1.84
42033850--42033881	8	4.0	8	95	0	55	40	34	12	12	1.81
42034143--42034197	26	2.3	23	74	17	56	36	30	21	10	1.88
42034159--42034212	26	2.1	26	85	0	72	37	24	20	18	1.94
42034301--42034402	24	4.2	24	80	0	105	47	23	5	23	1.73
42034347--42034412	24	2.8	24	76	4	71	45	24	4	25	1.72
42034429--42034681	27	9.4	27	76	3	154	20	19	19	39	1.93
42034429--42034681	134	1.9	133	80	2	301	20	19	19	39	1.93
42034659--42034829	27	6.3	27	86	2	254	23	18	21	36	1.94
42037002--42037039	20	1.9	20	88	0	58	10	36	21	31	1.87
42037563--42037588	13	2.0	13	100	0	52	38	0	23	38	1.55
42051515--42051543	12	2.4	12	100	0	58	79	6	0	13	0.93
42052470--42052524	24	2.3	24	83	0	65	63	0	25	10	1.27
42052572--42052612	19	2.2	19	86	4	57	73	4	17	4	1.19
42052565--42052619	28	2.0	27	82	3	65	72	5	18	3	1.18
42056944--42057049	48	2.2	48	85	9	137	14	24	1	59	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42058074--42058108	13	2.7	13	100	0	70	14	0	5	80	0.89
42061894--42061927	10	3.3	10	95	4	59	73	8	0	17	1.08
42061894--42061927	11	3.2	11	91	8	61	73	8	0	17	1.08
42084359--42084535	27	6.5	27	83	3	185	28	28	16	27	1.97
42084359--42084536	54	3.3	54	80	3	205	28	28	16	27	1.97
42084380--42084535	82	1.9	81	84	3	206	28	28	16	26	1.97
42101155--42101232	27	2.9	26	88	7	111	11	23	23	42	1.86
42101169--42101249	27	3.0	27	85	3	92	12	20	23	43	1.86
42104456--42104497	22	2.0	22	86	13	63	54	0	0	45	0.99
42104459--42104492	16	2.2	15	89	5	50	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208