Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  31  of  208  ( 24943 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12276683--12276707
13
1.9
13
100
0
50
52
0
0
48
1.00
12278980--12279052
19
3.5
21
74
9
69
2
28
16
52
1.58
12281523--12281560
6
6.2
6
93
6
67
36
0
47
15
1.46
12281538--12281734
60
3.3
59
78
11
242
32
3
49
13
1.59
12288035--12288073
17
2.3
17
86
0
51
33
2
2
61
1.23
12288063--12288156
22
4.3
23
75
15
78
44
1
3
51
1.24
12291734--12291789
20
2.8
19
83
8
58
62
3
0
33
1.12
12291759--12291797
20
2.0
20
85
5
53
56
2
0
41
1.13
12299140--12299167
2
14.0
2
100
0
56
0
50
0
50
1.00
12303767--12303794
11
2.5
11
100
0
56
7
39
10
42
1.67
12307295--12307329
18
2.0
17
88
5
52
45
0
0
54
0.99
12307604--12307694
45
2.0
45
85
2
121
37
28
6
27
1.82
12307675--12307724
16
3.1
16
91
5
82
34
40
0
26
1.56
12307675--12307721
17
2.8
17
93
3
78
31
42
0
25
1.55
12311201--12311233
17
1.9
17
93
0
57
6
12
15
66
1.42
12315229--12315276
24
2.0
24
100
0
96
54
16
12
16
1.72
12315231--12315282
24
2.2
24
92
0
86
55
21
9
13
1.66
12325949--12325991
4
10.8
4
84
0
59
46
27
4
20
1.71
12325950--12325996
12
4.4
11
77
22
55
44
27
6
21
1.76
12326717--12326745
2
15.0
2
92
7
51
0
51
0
48
1.00
12332871--12332920
21
2.4
22
77
19
61
40
4
4
52
1.39
12333492--12333516
12
2.1
12
100
0
50
20
16
0
64
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12353227--12353275
25
1.9
26
95
4
91
34
16
14
34
1.89
12362986--12363012
13
2.1
13
100
0
54
37
0
14
48
1.45
12363564--12363623
31
1.9
31
96
0
111
56
13
10
20
1.65
12378221--12378261
21
2.0
21
90
0
64
43
17
17
21
1.87
12389103--12389155
7
7.6
7
97
0
97
30
11
0
58
1.33
12391828--12391864
18
2.1
18
100
0
74
48
21
13
16
1.80
12392150--12392222
21
3.4
22
88
5
114
0
30
19
50
1.48
12392150--12392234
21
4.0
22
85
3
102
0
29
17
52
1.45
12399928--12400171
50
4.7
50
82
4
256
20
29
24
25
1.99
12399927--12400173
100
2.4
105
85
7
335
20
29
24
25
1.99
12400271--12400302
13
2.5
13
94
0
55
56
12
0
31
1.37
12400514--12400571
30
1.9
30
85
0
80
31
22
5
41
1.76
12401057--12401084
4
7.0
4
100
0
56
0
25
0
75
0.81
12401134--12401175
15
2.7
15
88
3
57
4
19
2
73
1.12
12401189--12401225
5
7.6
5
82
17
51
56
0
2
40
1.13
12401186--12401225
19
2.1
19
90
9
64
55
0
2
42
1.13
12404263--12404295
15
2.2
15
100
0
66
27
0
0
72
0.85
12405316--12405363
22
2.1
24
92
7
82
43
8
14
33
1.75
12416622--12416649
6
4.7
6
100
0
56
17
46
0
35
1.49
12418002--12418189
3
62.7
3
70
4
65
10
23
29
36
1.88
12418110--12418189
30
2.7
30
90
0
133
10
28
28
32
1.89
12418079--12418175
45
2.2
45
86
0
131
12
26
26
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12418054--12418181
45
2.8
43
81
9
125
12
25
28
34
1.92
12426227--12426257
14
2.2
14
94
0
53
16
58
9
16
1.63
12429166--12429217
18
2.8
19
83
11
63
53
0
1
44
1.11
12429171--12429218
20
2.4
20
89
0
78
54
0
2
43
1.12
12429309--12429348
20
2.0
20
90
0
62
50
12
10
27
1.72
12429297--12429363
34
1.9
35
90
3
109
47
11
7
32
1.68
12429332--12429371
14
2.9
14
80
0
53
45
15
5
35
1.68
12431127--12431169
22
2.0
22
85
0
59
46
0
0
53
1.00
12435076--12435125
24
2.1
24
96
0
91
18
16
14
52
1.76
12441819--12441889
22
3.4
22
74
18
80
39
1
0
59
1.06
12441818--12441868
23
2.3
21
80
12
57
41
1
0
56
1.10
12441817--12441889
20
3.5
20
73
12
76
38
1
0
60
1.06
12441861--12441925
29
2.3
29
77
17
73
26
1
3
69
1.12
12454305--12454342
19
2.0
20
89
5
60
60
0
0
39
0.97
12459466--12459510
21
2.1
22
84
12
58
66
8
11
13
1.44
12462315--12462489
34
5.1
34
80
2
179
41
16
21
20
1.90
12462327--12462490
35
4.7
35
80
2
170
40
17
22
19
1.91
12462327--12462489
69
2.4
69
91
0
263
40
17
22
19
1.91
12462722--12462763
13
3.2
13
90
6
66
38
7
7
47
1.58
12480921--12481055
46
2.9
46
91
0
198
39
6
25
28
1.81
12500233--12500437
65
3.2
63
79
10
209
34
7
15
42
1.76
12500280--12500437
63
2.5
62
83
11
196
32
10
16
41
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12500620--12500779
82
2.0
82
97
0
302
30
20
26
23
1.98
12500620--12500785
41
4.0
41
90
0
260
30
20
26
22
1.98
12507589--12507757
63
2.7
62
83
10
159
35
7
15
42
1.74
12507634--12507780
61
2.4
60
80
15
176
32
10
17
39
1.84
12507962--12508127
41
4.0
41
92
0
269
29
20
27
22
1.99
12507962--12508121
82
2.0
82
98
0
311
29
20
27
23
1.98
12509533--12509579
24
2.0
23
84
12
60
29
14
4
51
1.62
12510701--12510792
9
10.3
9
73
17
59
55
4
1
39
1.27
12511212--12511350
46
3.0
46
89
5
210
30
23
11
35
1.90
12513943--12513968
11
2.4
11
100
0
52
50
7
42
0
1.31
12514624--12514672
6
8.2
6
86
0
71
36
0
10
53
1.35
12514626--12514675
12
4.2
12
94
0
82
36
0
8
56
1.29
12514626--12514675
3
16.7
3
78
0
55
36
0
8
56
1.29
12514827--12514875
23
2.0
26
88
11
77
48
0
20
30
1.50
12520986--12521037
23
2.3
22
78
12
61
63
1
0
34
1.06
12521916--12521946
11
2.8
11
95
0
53
29
3
48
19
1.64
12526000--12526110
18
6.2
18
94
0
195
31
17
23
27
1.97
12526656--12526686
11
2.8
11
95
0
53
29
3
48
19
1.64
12531275--12531310
6
6.0
6
100
0
72
66
0
0
33
0.92
12538839--12538892
6
9.0
6
100
0
108
33
0
16
50
1.46
12539108--12539166
18
3.3
18
87
0
91
28
25
16
28
1.97
12543859--12543897
6
6.3
6
96
3
69
17
15
51
15
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12546251--12546284
3
11.3
3
100
0
68
67
0
0
32
0.91
12555986--12556034
23
2.0
25
85
14
68
51
14
8
26
1.70
12559021--12559055
17
2.0
18
88
5
54
71
5
2
20
1.19
12559093--12559158
26
2.6
27
81
11
77
53
1
1
43
1.19
12559694--12559739
19
2.5
18
82
6
56
36
4
4
54
1.40
12560904--12560928
8
3.1
8
100
0
50
88
0
12
0
0.53
12566988--12567030
18
2.4
18
84
7
52
16
23
20
39
1.92
12567844--12567876
16
2.1
16
94
0
57
33
0
36
30
1.58
12567821--12567863
21
2.0
21
86
8
61
30
0
37
32
1.58
12567855--12567949
45
2.1
44
88
1
136
34
5
27
32
1.79
12568068--12568150
27
3.0
28
77
8
80
50
3
0
45
1.19
12568253--12568287
18
2.0
17
88
5
52
54
0
0
45
0.99
12568273--12568451
55
3.1
54
64
22
128
49
7
2
41
1.43
12568268--12568458
61
3.2
61
68
14
178
49
6
2
41
1.43
12568239--12568458
120
1.8
120
97
0
413
49
5
2
42
1.39
12568373--12568407
18
2.0
17
88
5
52
60
0
0
40
0.97
12568448--12568494
17
2.9
16
78
18
53
46
2
6
44
1.40
12568467--12568500
17
2.0
17
94
0
59
50
0
5
44
1.26
12572836--12572867
17
1.9
16
93
6
55
50
0
6
43
1.27
12572840--12572901
18
3.5
18
72
10
56
48
0
3
48
1.17
12572975--12573058
27
3.1
27
78
10
66
50
0
2
47
1.14
12572998--12573043
17
2.7
17
83
16
60
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12573037--12573084
19
2.5
19
80
6
53
43
2
4
50
1.33
12573127--12573161
18
2.0
17
88
5
52
45
0
0
54
0.99
12579978--12580002
8
3.1
8
100
0
50
0
12
0
88
0.53
12581017--12581062
17
2.9
16
78
18
51
63
4
0
32
1.14
12581724--12581785
26
2.4
26
86
5
81
40
1
1
56
1.19
12581822--12581856
17
2.0
18
88
5
54
20
2
5
71
1.19
12582031--12582082
28
1.9
27
84
7
70
23
19
0
57
1.40
12607115--12607163
23
2.0
25
85
14
68
51
14
8
26
1.70
12610120--12610154
17
2.0
18
88
5
54
71
5
2
20
1.19
12610782--12610828
16
2.7
17
84
12
60
40
4
4
51
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208