genome.fa.s18.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  131  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42980031--42980074	23	2.0	22	86	4	61	31	0	13	54	1.39
42980206--42980516	43	7.3	42	82	7	333	24	17	30	27	1.97
42980210--42980516	86	3.6	86	84	3	395	24	17	30	27	1.97
42980206--42980516	129	2.4	128	86	0	433	24	17	30	27	1.97
42980565--42980611	22	2.2	21	84	3	58	44	23	17	14	1.85
42982314--42982505	79	2.4	78	82	1	240	33	17	13	35	1.88
42982464--42982658	86	2.3	86	79	4	216	38	11	12	37	1.80
42982517--42982768	86	3.0	85	82	4	285	34	11	10	43	1.75
42982541--42982789	83	3.0	83	78	7	202	34	12	10	43	1.75
42982637--42982848	83	2.6	81	79	5	196	32	13	8	44	1.75
42988962--42989160	100	2.0	100	90	0	317	35	26	10	27	1.89
42996098--42996200	26	3.8	27	73	10	77	48	0	8	41	1.40
42996124--42996177	26	2.1	26	89	0	81	48	0	9	42	1.35
42998110--42998534	44	9.8	44	73	8	246	27	20	20	30	1.98
42998074--42998551	129	3.7	130	82	4	531	26	20	20	32	1.97
43003367--43003420	26	2.1	26	85	0	72	48	1	9	40	1.46
43013549--43013579	16	1.9	16	93	0	53	48	3	0	48	1.17
43013652--43013906	79	3.1	80	83	7	280	35	17	10	36	1.84
43013771--43013941	80	2.1	79	87	4	236	33	16	11	38	1.84
43013897--43014093	84	2.3	84	80	4	227	35	10	12	41	1.78
43015362--43015409	24	2.0	25	83	4	62	29	14	18	37	1.91
43015392--43015470	25	3.2	25	78	10	90	21	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43015389--43015461	24	3.0	25	78	11	87	20	20	21	36	1.95
43015389--43015519	50	2.6	49	84	5	149	25	20	21	32	1.98
43015441--43015523	25	3.3	25	69	12	71	30	22	19	27	1.98
43017273--43017311	20	2.0	20	90	10	62	15	23	5	56	1.59
43017602--43017708	50	2.1	50	85	0	151	19	31	20	28	1.97
43018393--43019084	348	2.0	340	92	3	1154	33	18	14	32	1.92
43025263--43025301	20	2.0	20	90	10	62	15	23	5	56	1.59
43025513--43025634	49	2.5	49	78	4	129	25	24	19	30	1.98
43029786--43029814	15	1.9	15	100	0	58	34	17	13	34	1.89
43039158--43039194	11	3.2	11	85	14	56	78	2	2	16	0.98
43044235--43044292	30	1.9	30	85	0	80	13	34	32	18	1.91
43044368--43044401	12	2.9	12	95	4	61	67	0	5	26	1.13
43051827--43051860	17	2.0	17	88	0	50	26	38	14	20	1.91
43056580--43056614	18	1.9	18	94	0	61	25	31	8	34	1.86
43057109--43057138	9	3.4	9	90	9	53	36	0	0	63	0.95
43060596--43060638	19	2.2	20	81	18	56	30	4	20	44	1.72
43063452--43063484	14	2.3	15	89	5	50	24	0	33	42	1.55
43064120--43064162	13	3.5	12	78	15	52	34	0	0	65	0.93
43064737--43064797	26	2.4	26	76	13	72	57	18	13	11	1.65
43066977--43067022	2	23.0	2	90	0	74	2	2	47	47	1.26
43070219--43070275	21	3.0	18	79	18	62	42	24	5	28	1.76
43075056--43075178	22	5.3	23	80	14	119	48	13	12	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43075132--43075178	16	3.2	15	77	22	55	44	12	14	27	1.82
43075113--43075178	29	2.3	29	87	7	91	46	12	13	27	1.78
43080604--43080710	56	1.9	56	84	3	144	34	11	4	49	1.59
43080741--43080818	26	3.0	26	79	3	77	39	7	2	50	1.45
43087748--43087945	100	2.0	99	90	1	315	28	10	25	35	1.89
43093496--43093685	100	1.9	100	91	0	308	26	13	26	33	1.93
43096220--43096279	29	2.1	28	84	3	75	26	23	20	30	1.98
43097770--43097804	15	2.3	15	100	0	70	40	8	17	34	1.80
43107465--43107511	20	2.3	20	78	7	51	8	59	10	21	1.57
43107705--43107731	6	4.5	6	100	0	54	14	0	0	85	0.61
43107722--43107776	17	3.4	16	78	9	58	18	7	3	70	1.25
43109350--43109380	15	2.1	15	100	0	62	0	12	0	87	0.55
43114834--43114871	19	2.1	19	85	14	53	36	26	7	28	1.84
43116862--43116900	17	2.3	17	95	0	69	17	17	0	64	1.30
43120865--43120919	28	2.0	28	96	0	101	30	25	23	20	1.98
43127666--43127744	40	2.0	40	89	0	122	41	16	8	32	1.79
43130726--43130769	23	1.9	22	82	17	54	38	22	0	38	1.55
43130871--43130943	23	3.2	23	94	0	128	31	23	21	23	1.98
43131392--43131450	30	2.0	30	86	0	82	28	25	8	37	1.85
43134718--43134868	27	5.6	27	84	3	160	28	28	15	27	1.96
43134718--43134868	55	2.8	54	82	4	169	28	28	15	27	1.96
43151647--43151696	24	2.1	25	92	7	86	54	0	2	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43153338--43153529	3	64.3	3	72	12	92	30	6	3	58	1.41
43153742--43153779	4	9.2	4	83	16	51	23	0	2	73	0.95
43157685--43157717	11	3.1	11	91	4	50	78	3	18	0	0.87
43158633--43159335	131	5.4	131	87	2	936	27	20	25	26	1.99
43159067--43159275	44	4.8	44	70	15	119	28	20	25	25	1.99
43159327--43159532	44	4.9	41	72	9	164	30	21	20	27	1.98
43159284--43159609	129	2.5	128	84	3	359	30	20	20	27	1.98
43159368--43159568	44	4.6	44	72	13	155	30	20	21	26	1.98
43159326--43159616	129	2.3	129	84	4	372	30	20	20	27	1.98
43160172--43160242	22	3.1	22	66	18	63	11	52	9	26	1.68
43160163--43160256	47	2.0	47	97	0	179	14	50	8	26	1.72
43161232--43161300	23	2.9	24	69	16	63	33	4	7	55	1.47
43161463--43161507	9	5.2	9	79	15	51	22	2	2	73	1.05
43179297--43179419	65	1.9	64	83	9	162	54	17	4	22	1.62
43185551--43185585	18	1.9	18	88	0	52	25	14	14	45	1.82
43188883--43189131	129	1.9	129	81	3	295	18	13	13	54	1.71
43192791--43192832	12	3.7	12	75	12	52	52	2	2	42	1.27
43193820--43193892	26	2.8	25	78	13	85	32	17	9	39	1.82
43197317--43197357	16	2.6	16	81	14	50	60	0	19	19	1.36
43201057--43201125	26	2.7	26	79	0	93	24	28	21	24	1.99
43211023--43211054	12	2.7	12	90	0	55	15	15	34	34	1.90
43213144--43213220	30	2.6	30	85	0	100	29	23	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43213328--43213430	26	4.0	26	79	5	127	39	23	21	15	1.91
43213611--43213724	27	4.2	27	73	12	90	24	16	21	36	1.94
43213624--43214007	54	7.1	54	81	4	407	26	15	17	39	1.90
43213610--43214007	81	4.9	80	81	4	397	26	15	18	38	1.91
43213624--43214007	27	14.2	26	75	11	249	26	15	17	39	1.90
43216319--43216374	26	2.2	26	87	3	78	33	23	17	25	1.96
43217851--43217884	17	2.1	17	94	5	61	47	0	11	41	1.40
43223484--43223521	18	2.1	18	100	0	76	31	31	21	15	1.94
43228356--43228777	125	3.4	125	85	4	607	29	19	21	30	1.97
43232447--43232486	18	2.2	18	90	0	62	40	5	30	25	1.77
43233140--43233176	7	5.3	7	100	0	74	43	16	0	40	1.48
43244159--43244200	20	2.0	20	86	9	57	40	4	21	33	1.74
43249369--43249620	27	9.4	27	84	6	264	43	19	17	19	1.88
43249369--43249586	81	2.7	81	86	2	305	44	19	17	18	1.88
43249759--43249813	26	2.1	26	93	0	92	20	20	23	36	1.95
43259863--43259910	18	2.6	18	83	6	60	50	2	4	43	1.33
43259925--43259972	22	2.3	21	85	7	62	27	4	8	60	1.44
43264503--43264542	20	2.0	20	90	0	62	60	15	0	25	1.35
43264702--43264735	15	2.5	13	82	17	50	41	14	0	44	1.45
43264707--43264736	15	2.0	15	100	0	60	46	13	0	40	1.43
43272958--43273114	41	3.8	41	85	6	212	19	19	29	32	1.96
43273598--43273644	19	2.4	19	82	7	58	21	2	44	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43274894--43274926	14	2.3	15	85	15	52	24	0	39	36	1.56
43274901--43274932	14	2.3	14	94	0	55	25	0	40	34	1.56
43279056--43279141	43	2.0	43	90	0	136	34	10	10	44	1.73
43279517--43279592	38	2.0	38	84	5	100	30	14	26	28	1.95
43279409--43279667	43	6.2	43	74	9	144	27	15	28	28	1.96
43286415--43286678	130	2.0	130	94	0	456	27	16	9	45	1.79
43288384--43288434	26	1.9	27	84	4	68	23	9	13	52	1.70
43291141--43291188	21	2.4	20	75	21	55	54	6	4	35	1.45
43295488--43295533	23	2.0	23	100	0	92	39	4	21	34	1.73
43301389--43301463	25	3.0	25	80	7	89	26	25	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208