genome.fa.s18.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  118  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38614788--38614962	75	2.3	75	89	2	273	45	25	0	29	1.54
38614770--38614895	23	5.2	23	76	19	105	48	23	0	28	1.51
38614770--38614829	23	2.6	23	100	0	120	48	25	0	26	1.52
38614875--38614937	30	2.1	30	88	5	92	39	30	0	30	1.57
38618299--38618609	126	2.5	125	88	3	441	33	20	14	30	1.93
38624407--38624638	96	2.4	96	86	2	322	38	2	19	39	1.64
38628579--38628621	18	2.4	18	80	0	50	46	9	25	18	1.79
38630377--38630410	14	2.7	12	83	16	50	70	0	0	29	0.87
38630377--38630410	13	2.6	13	90	0	59	70	0	0	29	0.87
38630454--38630518	11	5.9	11	81	0	76	46	0	29	24	1.53
38630452--38630518	22	3.0	22	84	2	89	46	0	29	23	1.53
38630451--38630543	11	8.5	11	75	9	64	49	1	26	22	1.57
38631044--38631089	9	5.1	9	83	0	56	52	15	4	28	1.61
38631044--38631090	18	2.6	18	93	0	85	51	17	4	27	1.64
38632752--38632796	13	3.5	13	76	11	56	31	28	2	37	1.69
38632751--38632802	26	2.0	26	92	0	86	36	25	3	34	1.74
38640583--38640625	21	2.0	22	82	13	54	41	6	18	32	1.77
38644180--38645263	545	2.0	545	97	0	2051	27	15	28	28	1.96
38645528--38645889	27	13.4	27	84	1	429	41	20	18	19	1.91
38647678--38647735	30	2.0	29	86	3	80	8	25	6	58	1.53
38648825--38648871	23	2.1	21	85	14	60	27	6	4	61	1.39
38651143--38651185	21	2.0	22	82	13	54	39	9	20	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38652259--38652340	27	2.8	29	85	12	105	17	20	30	31	1.95
38652284--38652569	74	3.8	75	86	3	414	22	18	26	32	1.97
38653947--38654015	26	2.8	25	81	14	72	20	20	20	39	1.93
38653954--38654018	26	2.5	26	85	11	82	20	21	21	36	1.95
38658544--38658618	20	3.6	19	80	16	87	40	22	4	33	1.73
38658532--38658618	43	2.0	43	97	0	165	40	21	4	33	1.74
38658532--38658601	23	3.2	23	76	19	94	40	22	4	32	1.74
38660015--38660131	37	3.2	37	67	4	101	35	30	17	17	1.92
38663032--38663076	19	2.3	20	88	3	65	31	20	2	46	1.62
38669052--38669419	46	7.6	47	85	10	426	34	14	22	28	1.93
38669052--38669419	98	3.7	98	95	0	637	34	14	22	28	1.93
38669382--38669547	37	4.5	37	96	0	305	38	17	18	25	1.92
38671861--38672100	50	4.7	50	77	5	189	22	28	21	27	1.99
38672445--38672501	30	1.9	30	82	7	71	26	26	5	42	1.76
38675317--38675408	18	4.9	19	75	11	91	23	23	1	51	1.55
38683268--38683310	21	2.0	21	86	0	59	6	39	0	53	1.28
38696044--38696068	12	2.1	12	100	0	50	24	40	28	8	1.83
38697471--38697617	75	2.0	75	87	2	215	45	9	10	34	1.72
38697654--38697812	81	2.0	82	87	3	232	47	5	4	42	1.47
38705450--38705744	51	5.8	50	79	6	317	28	26	15	28	1.96
38705451--38705740	153	1.9	151	82	4	368	28	26	15	28	1.96
38705455--38705744	102	2.9	102	91	0	447	28	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38716560--38716595	18	2.1	17	89	5	54	11	5	22	61	1.50
38727022--38727063	18	2.3	18	76	11	50	59	2	26	11	1.45
38729660--38729906	99	2.4	103	83	4	304	22	30	21	25	1.99
38729611--38729906	50	5.8	50	84	5	303	22	29	21	26	1.99
38731705--38731753	21	2.3	21	78	0	62	42	8	24	24	1.81
38732440--38732593	54	2.9	53	77	4	166	31	16	28	24	1.96
38733693--38733735	19	2.2	20	84	12	63	41	9	18	30	1.82
38749885--38749919	9	3.7	10	88	11	56	80	5	0	14	0.89
38751148--38751217	33	2.1	33	84	10	90	57	5	24	12	1.57
38753945--38753985	19	2.2	19	100	0	82	29	9	14	46	1.77
38753953--38754005	19	2.9	17	86	8	61	33	13	9	43	1.76
38762219--38762411	50	3.8	50	88	0	269	21	30	22	25	1.99
38766515--38766560	18	2.6	18	89	0	65	13	17	4	65	1.42
38766515--38766568	18	3.0	18	88	0	63	11	16	5	66	1.40
38768095--38768161	28	2.4	27	87	5	89	28	7	11	52	1.65
38773196--38773229	16	2.1	17	88	5	52	14	2	0	82	0.79
38774304--38774328	12	2.1	12	100	0	50	32	8	16	44	1.76
38775046--38775073	14	2.0	14	100	0	56	28	14	21	35	1.92
38785557--38785600	22	2.0	22	95	0	79	25	36	4	34	1.76
38792017--38792489	47	10.1	47	94	0	768	28	30	9	32	1.88
38804921--38804959	18	2.2	18	90	9	62	71	2	20	5	1.17
38807143--38807184	22	2.0	21	90	4	66	30	4	35	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38809502--38809539	10	3.8	10	80	13	51	28	28	15	26	1.96
38809493--38809561	20	3.5	20	86	13	90	26	27	13	33	1.93
38812781--38812818	15	2.4	16	91	4	60	5	21	0	73	1.02
38812826--38812869	19	2.2	20	88	4	63	6	11	2	79	1.01
38815035--38815063	11	2.6	11	100	0	58	20	6	0	72	1.07
38821612--38821669	15	3.9	15	81	6	73	1	24	1	72	1.03
38827011--38827056	15	3.0	15	78	15	58	23	32	13	30	1.93
38830877--38830914	20	1.9	20	88	0	58	63	5	5	26	1.37
38830954--38831086	66	2.0	66	98	0	257	27	24	9	38	1.87
38839415--38839457	12	3.6	12	96	0	77	13	2	6	76	1.08
38841071--38841128	29	2.0	30	86	10	84	62	1	24	12	1.39
38851970--38852090	63	1.9	63	89	3	190	27	19	14	39	1.89
38863433--38863653	40	5.6	40	88	3	324	23	21	25	28	1.99
38865626--38865893	40	6.7	40	94	0	464	22	26	19	30	1.98
38874318--38874584	40	6.7	40	95	1	484	21	28	20	29	1.98
38882918--38883225	40	7.7	40	96	0	544	22	27	20	30	1.98
38887561--38887593	16	2.0	17	88	5	50	39	3	0	57	1.14
38888688--38888732	5	8.4	5	90	4	54	17	0	2	80	0.82
38888691--38888732	6	7.5	6	86	7	54	16	0	2	80	0.81
38888688--38888732	11	4.1	11	88	8	65	17	0	2	80	0.82
38897518--38897562	19	2.4	19	96	0	81	40	26	11	22	1.87
38906067--38906286	73	3.0	73	94	0	377	40	23	5	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38908082--38908408	168	1.9	168	99	0	645	39	7	25	27	1.83
38920012--38920046	8	4.4	8	85	0	52	34	0	14	51	1.42
38922507--38922545	20	2.0	20	89	0	60	46	0	5	48	1.24
38927675--38927709	16	2.2	16	94	0	61	11	2	22	62	1.41
38930345--38930384	20	2.0	20	100	0	80	35	20	20	25	1.96
38944993--38945029	6	6.2	6	93	0	65	16	2	0	81	0.81
38948301--38948352	20	2.6	20	93	0	86	46	1	30	21	1.62
38964072--38964110	20	2.0	20	90	10	62	51	30	2	15	1.57
38985537--38985607	35	2.0	35	94	0	124	28	14	12	45	1.81
38986092--38986222	51	2.6	50	80	3	156	28	26	18	26	1.98
38991852--38992094	51	4.8	51	76	6	235	30	26	17	25	1.97
38991849--38992090	101	2.4	101	84	1	297	30	26	18	24	1.98
38991844--38992114	101	2.7	98	78	6	265	29	26	16	26	1.97
38993958--38993999	22	2.1	19	86	13	57	45	2	0	52	1.13
38995519--38995606	3	29.7	3	96	2	160	68	0	31	0	0.90
39003589--39003668	20	4.0	20	74	6	90	41	21	28	8	1.83
39003586--39003666	40	2.0	40	85	0	108	43	19	28	8	1.81
39007267--39007333	20	3.3	20	70	13	66	40	20	26	11	1.88
39014720--39014953	81	2.9	80	82	8	271	36	18	20	24	1.95
39014720--39014952	27	8.7	27	80	3	220	36	18	20	24	1.95
39014992--39015073	24	3.5	24	85	5	96	19	7	25	47	1.75
39015137--39015207	27	2.7	26	77	12	65	23	23	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39015242--39015459	32	6.8	32	78	1	231	19	21	23	34	1.96
39015242--39015459	64	3.4	64	90	1	339	19	21	23	34	1.96
39015529--39015581	26	2.0	26	88	0	79	18	28	20	32	1.97
39015697--39015750	28	1.9	28	85	7	74	20	27	22	29	1.98
39025577--39025614	18	2.1	18	90	5	58	15	15	0	68	1.22
39039290--39039794	47	10.7	47	95	0	877	32	8	30	28	1.87
39039913--39039991	37	2.1	37	90	0	122	24	18	31	25	1.98
39041206--39041437	40	5.8	40	85	0	320	27	21	25	25	1.99
39045277--39045521	47	5.3	47	89	6	351	31	8	29	29	1.88
39057992--39058068	39	2.0	39	94	0	136	37	16	10	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208