genome.fa.s18.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  112  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36782801--36783165	27	13.5	27	79	8	296	20	17	17	44	1.86
36782801--36783107	81	3.8	81	79	4	350	19	17	17	45	1.86
36783413--36783455	20	2.2	19	84	12	52	16	44	23	16	1.86
36788236--36788290	24	2.2	25	90	3	85	34	21	7	36	1.81
36790125--36790149	8	3.1	8	100	0	50	24	0	0	76	0.80
36792691--36792734	23	1.9	22	82	17	54	36	25	0	38	1.56
36792869--36793063	51	3.9	50	77	6	187	30	27	17	24	1.97
36792876--36793060	101	1.8	101	88	3	282	30	27	17	24	1.97
36796530--36796615	40	2.1	40	95	2	154	26	13	18	40	1.88
36797039--36797121	27	3.1	27	87	6	123	26	26	16	30	1.97
36797111--36797226	27	4.3	27	82	8	121	22	15	17	44	1.86
36797054--36797215	54	3.0	54	76	10	143	22	20	18	38	1.94
36810913--36810959	16	3.0	15	77	20	51	44	2	0	53	1.12
36810911--36810959	10	4.6	11	73	16	50	44	2	0	53	1.12
36810911--36810959	22	2.3	23	83	16	70	44	2	0	53	1.12
36811516--36811569	25	2.2	25	80	12	58	38	3	1	55	1.28
36813779--36813835	30	1.9	30	88	0	87	29	21	21	28	1.98
36823733--36823757	11	2.3	11	100	0	50	60	0	24	16	1.36
36824852--36824905	25	2.3	23	84	9	65	24	0	1	74	0.92
36825613--36825643	12	2.6	12	94	0	53	16	16	29	38	1.90
36827738--36827775	5	7.4	5	96	3	67	36	0	0	63	0.95
36828547--36828670	28	4.5	28	89	5	198	29	21	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36828772--36828845	26	2.8	26	82	10	89	32	25	24	17	1.97
36829058--36829282	54	4.2	53	82	7	233	19	17	20	42	1.90
36829085--36829282	27	7.4	27	86	5	258	19	17	20	42	1.89
36829058--36829297	27	8.9	26	83	7	162	19	17	21	41	1.90
36829060--36829282	81	2.8	80	81	7	272	19	17	20	42	1.89
36829090--36829340	81	3.1	81	80	6	233	20	15	19	43	1.87
36831166--36831204	11	3.6	11	96	3	71	56	0	35	7	1.28
36841600--36841783	51	3.6	51	80	7	223	29	14	25	30	1.95
36841600--36841788	101	1.9	102	85	3	265	29	14	25	30	1.95
36856831--36856907	32	2.4	32	80	0	91	24	24	6	44	1.77
36861340--36861416	32	2.4	32	80	0	91	24	24	6	44	1.77
36866650--36866702	25	2.1	25	92	0	88	32	16	13	37	1.88
36867474--36867645	73	2.4	72	89	1	254	24	24	27	23	2.00
36867545--36868082	114	4.7	114	90	0	799	25	21	27	26	1.99
36869481--36869672	97	2.0	92	85	8	253	46	11	12	29	1.77
36869578--36869932	107	3.3	107	88	2	500	47	12	12	28	1.76
36872311--36872410	13	7.6	13	68	10	60	42	10	5	43	1.60
36872335--36872418	26	3.2	26	71	15	91	44	10	4	40	1.60
36872450--36872493	19	2.4	19	82	14	56	47	4	2	45	1.35
36874369--36874412	22	2.0	22	90	0	70	45	27	15	11	1.81
36875336--36875376	20	2.1	19	90	4	64	46	41	0	12	1.41
36875425--36875469	20	2.2	20	92	4	72	15	0	37	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36875425--36875472	14	3.5	14	77	2	53	16	0	39	43	1.48
36875979--36876011	3	11.0	3	100	0	66	66	0	0	33	0.92
36876062--36876255	98	2.0	97	94	1	343	36	10	19	32	1.87
36878617--36878652	18	2.0	18	94	0	63	30	0	25	44	1.54
36878617--36878653	17	2.1	18	90	5	58	32	0	24	43	1.55
36880058--36880235	27	6.6	27	77	6	137	30	28	15	25	1.96
36880058--36880235	54	3.3	54	78	7	164	30	28	15	25	1.96
36887457--36887634	27	6.6	27	77	6	137	30	28	15	25	1.96
36887457--36887634	54	3.3	54	78	7	164	30	28	15	25	1.96
36890064--36890289	81	2.8	81	86	5	303	20	29	15	34	1.94
36890223--36890290	21	3.3	21	67	19	61	19	35	16	29	1.93
36890064--36890287	122	1.8	122	89	1	351	20	29	15	34	1.94
36890064--36890293	41	5.6	41	87	1	318	20	28	15	35	1.93
36897849--36897877	12	2.5	12	94	5	51	37	0	20	41	1.53
36902094--36902146	3	17.7	3	76	0	52	60	5	1	32	1.31
36903723--36904177	219	2.1	219	89	1	698	27	19	18	33	1.96
36923862--36923908	23	2.1	23	84	7	62	51	12	4	31	1.59
36924577--36924603	7	3.9	7	100	0	54	0	0	29	70	0.88
36931712--36931911	41	4.9	41	77	5	163	16	23	23	37	1.94
36931756--36931910	82	1.9	83	91	1	258	16	21	24	36	1.94
36932399--36932465	14	4.9	14	71	14	50	20	0	37	41	1.53
36937186--36937264	16	5.0	16	76	13	74	48	16	1	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36937223--36937263	13	2.8	15	85	14	59	46	19	0	34	1.50
36937342--36937395	22	2.3	22	87	9	72	48	11	0	40	1.39
36937352--36937402	22	2.4	22	90	3	86	49	9	0	41	1.36
36937327--36937436	56	2.0	56	98	0	211	47	10	0	40	1.45
36937462--36937592	9	15.9	9	69	17	70	44	16	3	35	1.64
36937454--36937579	25	5.2	25	71	9	91	46	15	2	34	1.59
36937468--36937587	16	7.9	16	66	19	78	45	16	2	35	1.61
36943017--36943165	66	2.3	65	86	5	210	41	20	24	14	1.89
36943018--36943187	66	2.6	66	84	3	191	41	18	26	12	1.87
36943168--36943247	21	3.8	21	83	0	79	32	17	43	6	1.74
36943552--36943906	43	8.2	43	72	6	243	24	18	29	27	1.98
36943571--36943823	87	2.9	86	86	2	328	23	16	30	29	1.97
36943575--36943845	86	3.1	86	83	4	312	25	17	29	28	1.97
36944030--36944072	22	2.0	22	90	0	68	41	25	20	11	1.86
36946126--36946198	29	2.4	29	81	4	83	32	9	9	47	1.68
36950792--36950843	27	1.9	27	96	0	95	40	11	32	15	1.83
36952697--36952727	16	2.0	15	93	6	53	45	3	6	45	1.45
36957359--36957425	34	1.9	35	87	3	100	31	8	14	44	1.76
36957374--36957413	20	2.0	20	90	0	62	27	10	12	50	1.72
36957359--36957429	14	4.5	15	71	20	56	29	9	16	43	1.80
36957500--36957576	20	3.8	20	73	13	86	33	3	3	58	1.35
36957510--36957600	40	2.3	40	81	7	96	39	3	4	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36957592--36957627	18	2.0	18	88	0	54	61	8	0	30	1.26
36958499--36958528	14	2.1	14	93	0	51	40	20	10	30	1.85
36962791--36962834	22	2.0	23	86	4	63	63	2	2	31	1.19
36976074--36976125	24	2.2	24	89	0	77	50	9	3	36	1.54
36978716--36978861	40	3.6	41	81	9	176	25	27	22	24	2.00
36980291--36980406	56	2.1	56	96	0	214	23	24	8	43	1.81
36987254--36987438	40	4.7	40	82	6	207	26	27	21	24	1.99
36988865--36988984	56	2.1	56	98	0	231	22	23	9	45	1.81
36992435--36992486	24	2.2	24	89	0	77	50	9	3	36	1.54
36995014--36995089	39	1.9	39	97	0	143	35	15	5	43	1.70
36996692--36996779	38	2.3	38	92	0	140	35	13	20	30	1.91
36998440--36998467	13	2.2	13	100	0	56	28	0	10	60	1.30
37008225--37008273	15	3.1	17	69	22	52	16	32	28	22	1.95
37008207--37008273	30	2.2	30	89	0	98	20	34	23	20	1.97
37018122--37018194	7	10.4	7	76	5	67	32	15	0	52	1.43
37018120--37018195	28	2.7	28	80	8	91	32	15	0	51	1.44
37018122--37018194	21	3.5	21	78	0	74	32	15	0	52	1.43
37018190--37018216	7	3.9	7	100	0	54	29	40	0	29	1.57
37018724--37018749	7	3.7	7	100	0	52	30	30	0	38	1.58
37023998--37024133	24	5.6	25	76	2	89	33	19	27	19	1.96
37024053--37024133	24	3.4	24	81	3	101	34	22	28	14	1.94
37024127--37024193	25	2.7	25	81	4	73	37	25	20	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37024251--37024315	25	2.6	25	82	0	76	36	23	26	13	1.92
37026118--37026182	19	3.3	19	65	23	53	16	18	24	40	1.91
37026113--37026193	40	2.0	40	100	0	162	16	19	22	41	1.89
37026984--37027046	30	2.2	30	88	5	94	49	14	12	23	1.78
37026999--37027064	31	2.2	30	83	2	78	42	21	9	27	1.83
37027424--37027471	21	2.3	20	82	10	53	56	2	0	41	1.11
37027394--37027613	10	22.4	10	67	14	93	62	3	2	31	1.23
37027589--37027661	25	2.8	25	73	8	67	60	1	0	38	1.06
37028030--37028181	37	4.1	36	71	19	107	31	1	5	61	1.29
37028030--37028136	10	11.1	10	70	15	66	31	0	3	63	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208