genome.fa.s18.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  91  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31405883--31405922	19	2.1	19	85	4	53	37	12	17	32	1.87
31406124--31406190	26	2.6	26	95	0	116	10	26	20	41	1.85
31406517--31406593	38	2.0	38	100	0	154	37	10	18	33	1.85
31408659--31408847	95	2.0	95	95	0	342	40	20	14	24	1.90
31409803--31409964	51	3.0	58	88	8	227	48	9	14	27	1.76
31411061--31411592	263	2.0	264	97	0	1003	39	15	10	35	1.81
31414746--31414771	13	2.0	13	100	0	52	46	0	7	46	1.31
31418071--31418109	3	13.3	3	89	5	62	2	0	61	35	1.10
31418139--31418188	24	2.1	24	100	0	100	28	16	12	44	1.83
31420690--31420737	25	1.9	25	100	0	96	56	4	18	20	1.58
31421815--31421881	34	1.9	35	84	3	91	32	8	13	44	1.75
31422842--31422884	11	3.9	11	84	0	50	30	25	0	44	1.55
31422820--31422887	22	3.1	22	80	16	70	25	27	1	45	1.62
31428389--31428678	125	2.3	126	90	0	456	26	22	19	31	1.98
31428690--31428984	96	3.1	94	84	2	374	40	17	3	38	1.67
31431132--31431168	18	2.0	18	89	5	56	24	13	0	62	1.31
31431562--31431624	28	2.1	31	81	18	73	25	12	7	53	1.65
31435150--31435174	12	2.1	12	100	0	50	16	44	16	24	1.86
31435293--31435437	65	2.2	65	88	0	218	24	23	26	25	2.00
31440189--31440254	26	2.6	25	76	7	60	18	22	24	34	1.96
31440288--31440358	24	3.0	24	83	4	81	14	29	23	32	1.94
31447230--31447354	62	2.0	63	90	6	200	36	11	24	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31447292--31447535	46	5.3	46	97	1	438	34	13	22	29	1.93
31452575--31453235	86	7.6	87	89	1	970	28	22	23	25	1.99
31452706--31452841	43	3.2	43	61	15	100	28	25	22	23	1.99
31452575--31453235	173	3.8	174	90	1	988	28	22	23	25	1.99
31452567--31453235	259	2.6	259	91	0	1059	28	22	23	25	1.99
31454611--31454718	54	2.0	53	85	5	146	28	25	25	21	1.99
31457499--31457687	95	2.0	95	93	0	324	37	4	21	36	1.73
31458145--31458203	12	5.1	12	75	19	54	49	1	1	47	1.21
31458259--31458308	25	2.0	24	84	7	64	44	8	10	38	1.68
31463492--31463730	50	4.7	50	83	5	275	26	21	28	23	1.99
31463484--31463731	100	2.4	102	83	7	306	26	21	28	23	1.99
31469031--31469136	41	2.6	41	93	0	176	21	20	25	32	1.98
31472933--31473016	29	2.8	29	77	16	84	65	1	3	29	1.17
31472924--31473016	9	9.7	9	70	15	53	65	2	3	29	1.20
31473149--31473183	18	1.9	18	88	11	54	45	0	0	54	0.99
31473635--31473681	23	2.1	23	92	4	78	23	2	10	63	1.37
31473634--31473843	41	5.0	40	70	21	132	30	0	12	57	1.39
31473616--31473802	102	1.9	100	85	8	263	29	0	12	57	1.39
31473768--31473845	22	3.1	27	74	25	89	29	0	12	57	1.36
31473635--31473898	21	12.2	21	73	19	149	29	0	12	56	1.42
31473736--31473824	19	4.4	19	89	8	124	29	0	13	57	1.37
31474108--31474149	16	2.7	15	85	7	57	38	2	2	57	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31480036--31480117	36	2.3	36	79	8	87	46	1	19	32	1.58
31484568--31484601	18	1.9	17	88	5	50	29	0	5	64	1.17
31489932--31489981	26	1.9	26	100	0	100	38	28	8	26	1.84
31491739--31491769	14	2.2	14	100	0	62	51	19	0	29	1.47
31495484--31495509	6	4.3	6	100	0	52	84	0	0	15	0.62
31495940--31495980	9	4.6	9	100	0	82	9	68	21	0	1.18
31495940--31495992	6	8.8	6	82	0	52	7	67	20	3	1.31
31499829--31499864	12	3.0	12	84	15	56	36	0	25	38	1.56
31500580--31500636	26	2.2	26	78	9	64	52	3	1	42	1.28
31501877--31501916	17	2.3	17	86	4	62	37	5	0	57	1.21
31504986--31505195	43	4.9	44	80	8	227	32	26	18	22	1.97
31505693--31505748	28	2.0	29	82	3	69	28	19	3	48	1.66
31505977--31506221	73	3.4	73	85	3	316	28	22	25	24	1.99
31506643--31506697	15	3.7	15	75	20	62	23	0	40	36	1.55
31506884--31506924	14	2.9	14	88	3	55	29	0	34	36	1.58
31506916--31506956	21	2.0	20	85	4	55	19	0	41	39	1.52
31506944--31506986	15	2.9	15	93	3	70	20	0	44	34	1.52
31506924--31507011	15	6.1	14	73	18	56	22	0	40	36	1.54
31507562--31507850	107	2.7	106	92	4	476	51	11	10	27	1.70
31507636--31508111	250	1.9	249	88	4	717	47	10	12	28	1.75
31510636--31510688	26	2.0	26	100	0	106	35	7	30	26	1.84
31516569--31516624	29	1.9	29	82	7	69	44	14	1	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31524037--31524075	14	2.5	16	80	19	55	64	0	0	35	0.94
31524037--31524076	17	2.6	16	84	15	57	62	0	0	37	0.95
31527493--31527813	174	1.8	175	83	3	423	42	22	8	26	1.83
31533292--31533341	22	2.3	22	82	0	64	44	6	18	32	1.74
31536328--31536454	61	2.1	61	85	2	166	41	14	5	38	1.69
31536626--31536655	7	4.3	7	100	0	60	66	0	33	0	0.92
31537578--31537675	11	8.5	11	71	8	52	63	6	5	25	1.39
31545905--31545942	19	2.0	19	85	10	51	0	21	2	76	0.91
31545897--31545941	13	3.3	13	79	11	54	2	17	2	77	0.97
31545891--31545964	28	2.5	29	78	8	69	4	20	1	74	1.06
31547855--31548074	42	5.1	43	86	5	250	31	18	23	26	1.97
31547962--31548112	42	3.6	43	88	2	153	29	19	23	27	1.98
31548566--31548631	21	3.1	21	82	4	62	4	42	18	34	1.70
31554128--31554232	25	4.2	25	76	11	106	33	2	20	43	1.66
31554145--31554758	9	69.1	9	67	19	287	32	2	19	45	1.63
31554166--31554485	34	9.5	34	72	15	147	31	1	20	46	1.61
31554176--31554459	59	4.7	58	82	9	250	32	2	19	45	1.62
31554145--31554491	43	8.0	44	73	12	240	31	2	20	46	1.63
31554306--31554362	19	3.1	19	82	12	57	31	0	19	49	1.49
31554605--31554629	13	1.9	13	100	0	50	36	0	24	40	1.55
31554581--31554631	22	2.3	22	83	6	59	35	1	21	41	1.65
31554603--31554681	16	5.0	16	73	13	74	31	1	18	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31556816--31556856	10	3.9	10	81	12	55	41	14	0	43	1.45
31556815--31556855	12	3.6	12	87	12	68	41	12	0	46	1.41
31558995--31559062	15	4.9	14	71	16	52	41	33	0	25	1.56
31559547--31559825	41	6.8	41	80	5	298	35	23	25	15	1.94
31559586--31559824	82	2.9	82	93	1	383	35	23	25	15	1.94
31559904--31559979	40	1.9	40	86	5	109	15	27	26	30	1.96
31563060--31563099	17	2.3	18	87	12	57	45	0	0	55	0.99
31563139--31563313	87	2.0	88	84	4	228	37	7	12	43	1.70
31565691--31565746	13	4.3	13	73	8	51	33	3	0	62	1.12
31573301--31573457	73	2.2	71	80	6	174	39	21	17	22	1.92
31573994--31574040	14	3.4	14	82	5	51	17	0	38	44	1.48
31574089--31574162	7	10.4	7	75	13	53	18	1	29	50	1.56
31574088--31574170	21	4.0	21	78	9	71	19	1	30	49	1.56
31574111--31574184	7	10.7	7	82	2	69	21	0	31	47	1.51
31574399--31574453	27	2.1	25	81	18	60	45	5	1	47	1.36
31574652--31575126	148	3.2	146	80	6	510	27	16	20	35	1.94
31575404--31575437	6	5.7	6	85	0	50	17	50	14	17	1.79
31575647--31575680	14	2.4	14	95	0	59	23	5	11	58	1.55
31575680--31575705	11	2.4	11	100	0	52	0	7	38	53	1.30
31575709--31575760	23	2.4	21	87	9	70	23	11	23	42	1.86
31576707--31576812	9	12.4	9	75	13	82	46	17	0	34	1.55
31576711--31576810	16	6.0	16	75	12	69	47	17	1	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31576696--31576783	25	3.5	25	88	0	122	48	18	1	31	1.55
31582638--31582885	43	5.8	43	90	0	372	26	19	30	23	1.98
31582638--31582872	128	1.8	129	90	0	382	27	19	30	23	1.98
31584044--31584095	26	2.0	26	88	0	77	59	32	0	7	1.26
31585315--31585350	19	1.9	18	88	5	54	22	8	0	69	1.15
31586888--31586914	11	2.5	11	100	0	54	81	0	0	18	0.69
31588104--31588365	43	6.1	43	88	0	344	30	24	22	22	1.99
31588702--31588741	21	1.9	21	84	0	53	5	37	20	37	1.74
31588702--31588894	87	2.2	87	87	3	264	11	29	19	39	1.86
31588783--31588828	21	2.2	21	84	0	56	2	36	19	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208