genome.fa.s18.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  186  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58292562--58292609	22	2.2	23	85	7	64	66	12	6	14	1.42
58305947--58305980	12	2.8	12	87	12	52	23	5	0	70	1.09
58305907--58305987	7	12.0	7	74	20	50	22	4	1	71	1.12
58322480--58322661	43	4.3	43	81	6	235	27	29	19	23	1.98
58322522--58322687	86	1.9	86	87	2	244	27	27	19	25	1.99
58322503--58322746	43	5.7	42	77	7	156	28	29	18	24	1.98
58322480--58322722	129	1.9	127	86	3	344	28	28	18	23	1.98
58322503--58322700	86	2.3	85	79	9	231	26	29	19	25	1.98
58327717--58327746	15	2.0	15	93	0	51	40	36	0	23	1.55
58327937--58327985	14	3.6	13	78	8	53	38	44	2	14	1.56
58328624--58328946	41	7.9	41	86	0	405	29	29	22	18	1.98
58329042--58329069	12	2.3	12	100	0	56	46	32	14	7	1.71
58336029--58336225	98	2.0	98	92	0	331	37	22	9	30	1.86
58336918--58336951	16	2.1	16	88	0	50	58	2	8	29	1.43
58337566--58337678	19	5.8	19	83	4	145	35	15	9	39	1.80
58337566--58337677	40	2.8	39	89	5	163	35	14	9	40	1.79
58337866--58338228	44	8.4	42	71	10	225	27	21	21	29	1.99
58338311--58338496	44	4.2	43	66	14	110	25	24	20	29	1.99
58338220--58338608	132	2.9	132	93	1	681	23	25	20	30	1.99
58338327--58338534	44	4.7	43	67	15	104	23	26	20	29	1.99
58343951--58344147	98	2.0	98	92	0	331	37	22	9	30	1.86
58344839--58344873	16	2.2	16	89	0	52	60	2	8	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58352907--58352959	22	2.4	22	96	0	97	32	26	3	37	1.74
58354987--58355080	18	5.2	18	84	2	125	27	22	15	34	1.95
58354987--58355080	37	2.6	37	91	1	145	27	22	15	34	1.95
58369864--58369923	20	3.0	20	81	13	61	58	1	5	35	1.30
58369877--58369931	20	3.1	17	80	15	58	65	1	1	30	1.13
58371419--58372191	50	15.5	50	68	4	353	22	25	23	28	1.99
58371407--58372267	100	8.6	100	88	2	1207	22	25	23	28	1.99
58371407--58372267	199	4.3	199	90	1	1253	22	25	23	28	1.99
58371407--58372267	299	2.9	299	91	0	1323	22	25	23	28	1.99
58374094--58374166	1	73.0	1	72	0	56	0	6	6	86	0.71
58374093--58374166	18	4.4	18	74	19	63	0	6	8	85	0.75
58374097--58374165	10	6.9	10	75	11	70	0	7	7	85	0.74
58374094--58374166	21	3.5	20	83	3	83	0	6	6	86	0.71
58374093--58374165	31	2.3	32	83	6	96	0	6	8	84	0.76
58380213--58380251	20	1.9	21	89	5	62	64	2	0	33	1.08
58385006--58385052	24	2.0	24	88	12	71	80	4	0	14	0.85
58387363--58387413	25	2.0	26	92	3	86	37	25	21	15	1.93
58387477--58387673	41	4.8	41	84	0	252	23	23	25	27	2.00
58388670--58388741	33	2.2	33	87	0	99	18	4	43	34	1.69
58388626--58388900	115	2.4	116	84	6	342	28	2	27	42	1.67
58389909--58389941	15	2.3	15	89	5	50	33	30	3	33	1.73
58393743--58394051	43	7.3	43	80	4	322	26	17	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58393743--58394017	127	2.1	129	85	4	369	27	16	28	26	1.97
58401605--58401653	18	2.6	19	90	9	82	22	16	0	61	1.34
58412937--58413156	110	2.0	110	100	0	440	30	17	19	33	1.94
58414544--58414698	74	2.1	74	97	2	296	36	9	7	46	1.66
58422161--58422203	21	2.0	21	90	0	68	20	9	13	55	1.66
58427773--58427830	29	1.9	31	82	10	75	50	6	27	15	1.70
58434790--58434831	22	2.0	21	85	4	57	23	7	0	69	1.13
58462070--58462158	18	4.9	18	85	0	124	30	23	14	31	1.94
58462064--58462158	36	2.6	36	94	0	172	29	23	15	31	1.95
58467606--58467652	20	2.2	20	85	7	58	31	10	10	46	1.73
58470371--58470433	22	2.6	25	71	16	62	57	3	7	31	1.43
58470535--58470571	18	2.0	19	89	5	58	75	5	8	10	1.17
58475607--58475704	32	3.2	29	64	25	74	41	23	4	30	1.73
58475602--58475742	64	2.2	64	97	1	266	40	25	5	28	1.78
58484656--58484695	20	1.9	22	85	10	57	35	30	10	25	1.88
58486768--58486805	20	1.9	20	94	0	67	15	26	13	44	1.83
58488488--58488526	20	1.9	21	84	5	53	66	2	2	28	1.18
58488550--58488585	15	2.5	14	86	8	54	44	8	0	47	1.33
58489270--58489313	20	2.2	20	91	0	70	27	20	6	45	1.76
58496201--58496260	27	2.2	27	93	0	102	45	31	5	18	1.71
58504205--58504380	91	1.9	91	97	0	334	30	23	13	32	1.93
58507920--58507976	27	2.1	27	100	0	114	43	14	7	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58508633--58508670	20	1.9	20	94	0	67	15	28	13	42	1.85
58514799--58514844	22	2.1	21	84	4	56	45	2	0	52	1.13
58524941--58524989	22	2.2	22	85	7	64	67	12	6	14	1.40
58526175--58526213	18	2.3	18	86	8	55	43	12	5	38	1.65
58526370--58526400	15	2.1	15	100	0	62	22	32	6	38	1.80
58529866--58530005	75	1.9	74	98	1	271	23	13	17	45	1.84
58529922--58529977	24	2.3	24	84	0	85	25	19	14	41	1.89
58539480--58539527	23	2.1	23	100	0	96	66	0	4	29	1.10
58542974--58543021	22	2.2	23	85	7	64	66	12	6	14	1.42
58557816--58557855	20	2.0	21	85	14	57	55	0	0	45	0.99
58570494--58570557	3	21.7	3	73	20	55	32	3	3	60	1.28
58570499--58570557	8	6.9	8	75	22	50	33	1	3	61	1.23
58570680--58570729	23	2.1	25	81	7	59	42	8	0	50	1.32
58575187--58575232	12	3.8	12	79	0	56	76	4	15	4	1.11
58575183--58575234	24	2.3	22	83	9	68	76	3	15	3	1.07
58575514--58575600	45	1.9	45	83	4	113	28	11	9	50	1.69
58576201--58576446	44	5.6	44	73	9	216	28	21	26	24	1.99
58576243--58576451	43	4.8	44	73	9	187	29	22	24	23	1.99
58576196--58576451	87	2.9	87	92	0	431	28	21	25	24	1.99
58576239--58576683	44	10.4	42	68	12	239	31	22	21	23	1.98
58576435--58576697	128	2.0	129	89	0	402	33	20	21	23	1.97
58578469--58578536	3	22.3	3	75	19	61	30	4	2	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58578409--58578499	8	11.1	8	72	23	57	29	5	1	63	1.24
58578633--58578682	21	2.3	22	75	21	52	42	10	0	48	1.37
58581108--58581432	17	18.6	17	74	11	214	45	12	12	29	1.79
58581093--58581432	53	6.5	53	75	11	161	45	12	12	29	1.79
58581107--58581432	18	18.6	18	76	11	286	45	12	12	29	1.79
58581107--58581430	70	4.6	68	76	9	278	45	12	12	29	1.78
58581093--58581432	35	9.7	35	76	12	250	45	12	12	29	1.79
58581566--58581631	18	3.5	18	78	15	62	43	9	13	33	1.76
58581786--58581835	11	4.5	11	80	12	57	66	0	0	34	0.92
58581786--58581835	5	8.8	6	89	10	63	66	0	0	34	0.92
58581973--58582040	7	9.0	7	82	17	75	0	17	0	82	0.67
58581974--58582041	8	8.8	8	84	9	79	0	16	0	83	0.64
58581973--58582041	33	2.2	33	87	7	99	0	17	0	82	0.67
58581973--58582044	23	3.1	23	80	9	92	0	18	0	81	0.68
58582230--58582270	17	2.3	18	91	8	66	4	9	4	80	1.00
58582406--58582459	3	17.0	3	81	14	56	0	31	0	68	0.90
58582392--58582458	32	2.1	33	86	8	102	0	26	0	73	0.84
58582799--58582915	30	4.0	28	76	7	108	39	5	22	32	1.78
58582799--58582900	30	3.4	30	80	2	116	39	5	20	34	1.77
58586007--58586037	15	2.1	15	100	0	62	38	6	32	22	1.80
58586194--58586232	18	2.3	17	86	8	53	38	5	12	43	1.65
58586974--58587003	15	2.0	15	93	0	51	23	6	46	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58590365--58590395	15	2.1	15	100	0	62	38	6	32	22	1.80
58590552--58590590	18	2.3	17	86	8	53	38	5	12	43	1.65
58593829--58593872	15	2.9	15	74	12	54	38	29	0	31	1.58
58594399--58594428	15	2.0	15	93	0	51	40	36	0	23	1.55
58594568--58594636	36	1.9	36	82	5	86	37	34	4	23	1.75
58594632--58594669	14	2.7	14	87	0	58	31	52	0	15	1.43
58595308--58595630	41	7.9	41	89	0	450	29	29	23	17	1.97
58599337--58599386	13	4.2	12	78	16	59	54	2	0	44	1.11
58604667--58604842	91	1.9	91	89	0	271	32	19	12	35	1.90
58613790--58613841	23	2.3	23	90	6	79	34	13	9	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208