genome.fa.s18.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  119  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39059524--39059570	21	2.2	21	84	3	58	36	19	17	27	1.93
39064016--39064050	8	4.4	8	85	0	52	2	25	20	51	1.61
39079450--39079485	18	2.0	18	88	0	54	33	5	38	22	1.77
39089247--39089372	42	2.9	42	80	8	112	32	23	16	27	1.96
39089236--39089384	43	3.5	43	76	8	124	29	24	18	28	1.98
39094942--39094998	31	1.9	30	82	10	73	40	7	22	29	1.80
39098585--39098613	4	7.5	4	92	7	51	24	0	0	75	0.80
39114362--39114450	25	3.6	25	78	0	88	32	20	22	24	1.98
39116475--39116581	25	4.3	25	79	0	124	25	18	24	31	1.98
39124922--39124983	31	2.1	30	82	17	76	45	8	17	29	1.77
39131041--39133520	853	2.9	853	98	0	4822	33	19	12	34	1.89
39143269--39143391	52	2.4	52	84	6	164	43	5	1	49	1.36
39143354--39143428	38	2.0	38	94	0	132	42	9	0	48	1.35
39148258--39148296	3	13.0	3	100	0	78	0	33	0	66	0.92
39155510--39155988	242	2.0	242	100	0	958	29	9	17	43	1.81
39157513--39157648	49	2.8	50	80	3	159	32	21	22	23	1.98
39169812--39170062	40	6.3	40	95	0	412	25	29	21	23	1.99
39169810--39170108	120	2.5	120	87	3	370	26	28	20	24	1.99
39187155--39187294	42	3.3	43	82	5	151	27	18	25	29	1.98
39198998--39199282	47	6.1	47	89	2	403	33	10	28	27	1.90
39199256--39199438	46	4.0	46	89	0	258	34	8	31	25	1.86
39201182--39201348	47	3.6	44	78	8	174	24	28	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39203460--39203618	43	3.7	44	78	12	159	25	17	24	32	1.97
39204335--39204377	11	4.1	10	85	11	59	18	2	27	51	1.59
39206835--39207229	196	2.0	196	90	1	612	25	23	15	35	1.94
39211185--39211253	35	2.0	35	91	5	113	46	7	0	46	1.30
39211219--39211390	94	1.8	94	96	0	317	36	12	4	46	1.62
39228169--39228218	25	2.0	25	100	0	100	44	4	16	36	1.66
39228240--39228279	17	2.4	17	86	0	53	37	5	2	55	1.35
39229135--39229233	27	3.7	27	80	0	117	20	15	23	41	1.89
39229190--39229246	27	2.1	27	83	6	71	21	15	26	36	1.93
39229227--39229466	27	8.9	27	91	0	365	37	14	15	32	1.88
39231903--39231959	30	1.9	30	88	0	87	33	10	24	31	1.89
39232299--39232553	47	5.7	47	71	17	138	29	20	27	22	1.99
39232394--39232550	81	1.9	82	83	6	203	29	21	26	22	1.99
39234293--39234516	63	3.6	63	83	2	245	20	27	26	26	1.99
39235178--39235229	23	2.3	22	83	3	59	73	0	19	7	1.07
39235189--39235229	21	1.9	22	90	5	66	70	0	21	7	1.11
39235222--39235301	40	2.0	40	95	0	142	55	3	15	26	1.57
39238544--39238641	27	3.5	27	87	4	115	26	15	27	30	1.96
39244964--39245042	20	4.0	20	77	0	77	13	24	26	35	1.93
39245051--39245099	26	1.9	25	87	4	71	14	18	26	40	1.89
39248021--39248204	40	4.6	41	83	9	215	25	22	27	24	2.00
39248021--39248204	79	2.3	81	83	10	229	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39248050--39248237	79	2.4	78	79	8	202	28	21	26	23	1.99
39255916--39256138	39	5.7	40	85	8	266	25	22	27	24	2.00
39255916--39256138	79	2.8	81	84	9	282	25	22	27	24	2.00
39255916--39256171	79	3.3	79	81	10	217	26	21	27	24	1.99
39263031--39263162	50	2.6	51	87	1	185	24	24	31	20	1.98
39263329--39263401	36	2.0	36	97	0	137	43	10	23	21	1.84
39264418--39267963	710	5.0	710	98	0	6774	24	24	18	32	1.97
39267955--39268288	43	7.9	42	72	7	262	24	32	24	18	1.97
39267947--39268266	128	2.5	126	82	4	399	25	31	25	18	1.97
39269046--39269185	56	2.6	54	84	9	166	26	22	29	22	1.99
39269188--39269352	49	3.3	49	71	11	165	36	18	20	24	1.95
39276251--39276436	49	3.6	50	81	5	194	27	20	30	21	1.98
39281189--39281325	27	5.2	27	64	19	92	28	28	9	33	1.88
39281173--39281331	52	3.1	52	99	0	309	28	28	9	33	1.88
39282537--39282734	50	3.8	50	81	4	207	27	19	27	25	1.99
39282982--39283020	12	3.2	12	85	0	51	51	5	23	20	1.67
39285572--39285718	10	15.3	9	68	20	52	70	0	28	1	0.96
39285575--39285718	38	4.2	35	74	15	122	70	0	28	1	0.96
39285572--39285664	24	3.8	24	76	10	91	68	0	31	0	0.90
39285564--39285716	43	3.6	43	78	12	149	68	0	30	1	0.98
39286081--39286632	157	3.5	158	73	13	506	51	8	9	30	1.63
39286249--39286757	160	3.2	157	72	15	513	51	7	10	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39286074--39286846	319	2.4	319	90	3	1193	50	8	10	30	1.67
39288961--39288987	11	2.5	11	100	0	54	37	7	14	40	1.74
39291241--39291281	18	2.3	18	82	0	55	17	46	2	34	1.61
39292353--39292417	27	2.4	27	84	5	78	21	35	23	20	1.96
39293843--39293887	20	2.2	20	84	7	56	26	11	15	46	1.79
39299089--39299214	27	4.7	26	81	6	135	27	17	26	27	1.98
39299088--39299214	54	2.3	54	82	11	152	28	17	26	27	1.98
39315244--39315302	28	2.2	28	85	8	79	10	13	8	67	1.41
39324080--39324132	23	2.4	22	76	20	56	9	18	1	69	1.25
39331690--39331753	29	2.2	29	91	5	103	31	7	12	48	1.69
39333106--39333367	39	6.6	39	88	6	320	24	27	22	25	2.00
39340459--39340620	81	2.0	81	97	0	306	29	13	19	37	1.90
39340590--39340620	16	1.9	16	93	0	53	35	12	32	19	1.90
39341884--39341926	11	3.9	11	96	0	77	76	6	0	16	0.99
39342880--39342933	21	2.4	21	78	9	54	72	3	18	5	1.20
39342986--39343034	21	2.2	23	82	13	59	69	0	22	8	1.14
39347658--39347888	112	2.1	112	96	2	430	42	13	12	31	1.82
39353097--39353131	9	3.8	9	88	3	52	85	2	8	2	0.79
39353074--39353140	22	3.2	20	78	16	73	79	2	13	4	1.01
39363990--39364015	6	4.3	6	100	0	52	84	0	0	15	0.62
39365778--39365812	9	3.8	9	88	3	52	71	8	8	11	1.31
39373784--39373817	9	3.8	9	88	0	50	70	11	8	8	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39382661--39383205	40	13.6	40	94	0	912	24	28	20	27	1.99
39386294--39386327	11	3.1	11	91	0	50	17	5	11	64	1.45
39401836--39401874	19	2.1	19	90	0	60	48	12	10	28	1.74
39401855--39401928	35	2.1	35	94	0	130	40	14	10	33	1.81
39401959--39402021	20	3.0	21	73	13	60	34	11	26	26	1.90
39402398--39402460	25	2.5	24	80	10	63	17	26	20	34	1.95
39405767--39406001	37	6.3	37	75	2	175	29	16	15	38	1.90
39405767--39406001	111	2.1	112	86	0	328	29	16	15	38	1.90
39408396--39408452	26	2.2	26	87	0	78	45	12	14	28	1.80
39415501--39415583	42	2.0	42	85	0	112	34	8	6	50	1.57
39418336--39418381	16	2.6	18	76	16	51	28	6	8	56	1.54
39420124--39420199	30	2.5	30	89	0	107	10	9	40	39	1.72
39430388--39430463	33	2.3	33	90	4	118	25	22	17	35	1.95
39431906--39431949	14	3.1	14	76	0	52	27	13	25	34	1.93
39431894--39431989	28	3.5	28	82	1	113	33	18	16	31	1.94
39436909--39437086	27	6.6	27	84	3	205	29	28	15	26	1.96
39436930--39437085	82	1.9	81	88	3	233	29	28	15	26	1.96
39444051--39444228	27	6.6	27	84	3	205	29	28	15	26	1.96
39444072--39444227	82	1.9	81	88	3	233	29	28	15	26	1.96
39450290--39450323	18	1.9	18	88	5	52	55	0	20	23	1.43
39450287--39450350	29	2.2	30	83	8	78	60	0	20	18	1.36
39456829--39456859	15	2.0	16	93	6	55	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39462381--39462641	39	6.7	40	86	8	319	25	22	27	24	2.00
39480680--39480731	3	17.3	3	76	7	52	32	1	1	63	1.16
39480691--39480734	17	2.6	17	85	3	63	34	2	0	63	1.07
39485475--39485716	50	4.8	50	87	5	337	26	22	30	21	1.98
39515818--39516002	40	4.7	40	80	10	186	25	22	27	24	2.00
39515871--39516035	79	2.1	79	81	8	185	26	20	27	24	1.99
39548050--39548152	25	4.1	25	83	7	113	29	24	21	25	1.99
39549759--39549801	16	2.7	16	81	0	50	13	23	6	55	1.62
39550058--39550250	50	3.7	50	79	9	201	23	26	21	27	1.99
39550058--39550244	100	1.8	105	83	6	258	22	27	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208