genome.fa.s18.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  163  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52777447--52777496	19	2.6	19	87	6	66	34	2	2	62	1.18
52777468--52777498	16	1.9	16	93	0	53	32	3	0	64	1.09
52778160--52778191	12	2.7	12	95	0	55	18	9	0	71	1.12
52796058--52796215	79	2.0	79	96	0	289	18	16	22	43	1.88
52798761--52798799	16	2.4	16	86	0	60	43	5	30	20	1.73
52799053--52799137	39	2.2	40	79	10	95	48	3	2	45	1.32
52800892--52800941	4	12.5	4	95	0	91	26	2	24	48	1.62
52802436--52802819	191	2.0	191	97	0	723	30	19	27	21	1.98
52806695--52806762	3	22.7	3	93	0	118	32	1	1	64	1.11
52806821--52806856	14	2.7	13	91	8	63	27	0	2	69	1.02
52806821--52806865	14	3.2	14	87	12	58	26	2	2	68	1.12
52806901--52806951	24	2.2	24	82	6	61	31	9	1	56	1.43
52807594--52808013	108	3.8	108	86	5	533	30	17	18	33	1.94
52811454--52811519	29	2.3	26	75	22	62	42	7	1	48	1.40
52811574--52811612	12	3.2	12	78	7	51	35	0	2	61	1.10
52811706--52811749	14	3.1	14	80	6	61	59	0	0	40	0.98
52811706--52811748	15	2.9	15	82	3	61	60	0	0	39	0.97
52813043--52813110	30	2.3	28	83	16	77	39	1	4	54	1.30
52814506--52814573	28	2.3	30	87	7	95	54	7	0	38	1.28
52814589--52814621	15	2.1	16	88	5	50	42	9	0	48	1.35
52814992--52815030	16	2.4	16	95	4	69	23	17	17	41	1.91
52816274--52816365	22	4.2	22	84	5	105	30	27	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52816315--52816416	51	2.0	50	83	7	125	32	32	0	35	1.58
52816602--52816657	24	2.3	23	77	19	60	28	0	5	66	1.14
52818796--52819150	28	13.1	28	82	10	400	47	22	0	29	1.52
52818785--52819140	108	3.3	107	92	4	549	46	24	0	29	1.53
52819091--52819166	23	3.7	18	74	23	53	47	21	0	31	1.51
52820123--52820308	85	2.2	84	95	0	327	33	22	19	23	1.97
52821162--52821216	28	2.0	28	92	0	92	43	7	9	40	1.64
52825449--52825501	20	2.8	18	75	13	52	50	1	9	37	1.46
52825449--52825501	18	2.9	18	80	8	63	50	1	9	37	1.46
52828581--52828620	14	2.9	14	84	0	53	32	7	17	42	1.77
52828604--52828643	20	2.0	20	90	0	62	27	10	12	50	1.72
52828589--52828655	34	1.9	35	90	3	109	31	8	13	46	1.74
52828583--52828659	14	5.0	15	71	20	52	32	9	15	42	1.78
52828636--52828720	32	2.6	31	76	9	89	25	10	18	44	1.82
52828753--52828780	14	2.0	14	100	0	56	42	0	0	57	0.99
52828971--52829113	71	2.0	72	94	1	252	42	20	9	27	1.83
52830056--52830124	35	1.9	36	94	2	122	50	18	4	26	1.65
52834135--52834202	25	2.6	27	84	15	97	38	8	27	25	1.85
52834657--52834701	18	2.5	19	75	17	51	55	2	4	37	1.32
52835739--52836019	125	2.3	124	84	4	370	28	14	24	33	1.94
52835929--52836132	85	2.4	85	99	0	401	23	21	24	31	1.98
52837088--52837140	23	2.7	18	72	25	52	32	0	20	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52837095--52837168	23	3.2	23	96	0	130	28	0	24	47	1.52
52837104--52837361	28	9.1	28	81	10	267	31	0	21	46	1.55
52837126--52837359	57	4.0	60	81	11	274	31	0	21	47	1.55
52837271--52837343	29	2.8	26	84	12	80	39	0	16	43	1.48
52839652--52839708	29	1.9	30	89	3	89	63	1	0	35	1.05
52839750--52839791	22	1.9	22	90	0	66	33	0	33	33	1.58
52839793--52839884	22	4.2	23	77	13	95	42	0	27	30	1.56
52840785--52840813	2	14.5	2	100	0	58	0	48	0	51	1.00
52852451--52852511	26	2.3	26	83	5	70	27	13	27	31	1.94
52855724--52855779	25	2.3	24	81	6	69	33	8	1	55	1.42
52858304--52858406	34	3.0	34	98	0	197	38	23	11	26	1.89
52860408--52860451	23	1.9	22	82	17	54	36	25	0	38	1.56
52860496--52860589	45	2.1	45	87	0	134	32	22	19	25	1.97
52860586--52860781	51	3.9	50	78	4	223	30	27	17	24	1.97
52860593--52860777	101	1.8	101	90	3	300	30	27	17	24	1.97
52865880--52865928	16	3.1	16	93	0	89	38	6	36	18	1.76
52865910--52866004	44	2.1	45	88	5	140	32	4	29	33	1.77
52866160--52866194	18	2.0	17	88	5	52	54	0	0	45	0.99
52866318--52866369	12	4.2	12	80	9	68	55	0	0	44	0.99
52866083--52866373	145	2.0	144	85	8	380	48	3	2	46	1.29
52869086--52869124	21	1.9	20	94	5	69	25	12	5	56	1.57
52870858--52870909	22	2.4	22	83	6	61	9	3	9	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52871633--52871692	3	20.3	3	81	3	68	33	3	1	61	1.22
52871793--52871826	10	3.0	12	83	16	54	41	14	0	44	1.45
52871899--52871930	16	1.9	17	93	6	57	43	6	0	50	1.27
52871901--52871946	24	1.9	24	82	8	58	43	8	0	47	1.34
52889096--52889142	18	2.6	18	79	0	58	57	4	38	0	1.18
52890992--52891145	76	2.0	76	92	0	254	29	11	16	42	1.83
52897893--52897928	18	2.0	18	89	10	56	50	2	5	41	1.40
52902482--52902898	139	3.0	139	95	1	736	33	22	11	32	1.91
52909573--52909650	23	3.4	23	75	7	68	28	16	15	39	1.89
52912346--52912559	44	4.8	44	81	1	221	40	13	24	21	1.90
52915009--52915069	7	8.9	7	77	10	54	45	37	0	16	1.47
52915000--52915069	14	5.1	14	75	11	65	47	37	0	15	1.46
52915018--52915069	21	2.5	22	81	9	72	48	34	0	17	1.48
52915000--52915069	28	2.6	27	84	8	88	47	37	0	15	1.46
52915053--52915104	26	2.0	27	84	3	70	46	25	1	26	1.63
52915146--52915201	13	4.2	13	73	11	51	17	7	35	39	1.78
52915148--52915214	20	3.3	20	77	8	64	19	7	32	40	1.79
52915229--52915261	7	4.7	7	92	0	57	3	0	51	45	1.16
52915229--52915268	14	2.9	14	92	0	62	7	0	47	45	1.31
52915228--52915268	21	2.0	21	90	0	64	9	0	46	43	1.36
52928627--52928661	18	1.9	18	88	0	52	34	25	2	37	1.71
52931042--52931071	10	3.0	10	100	0	60	90	0	10	0	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52933679--52933713	18	1.9	18	94	0	61	31	25	5	37	1.80
52935465--52935524	24	2.5	24	83	0	66	40	20	11	28	1.87
52941083--52941123	22	2.0	20	85	9	55	56	0	2	41	1.13
52942283--52942369	35	2.5	34	81	5	102	25	24	12	37	1.90
52942909--52942943	18	1.9	18	88	11	54	28	5	2	62	1.32
52948731--52948786	27	2.1	27	96	0	103	28	30	16	25	1.96
52950853--52951047	98	2.0	98	93	0	336	36	24	10	28	1.88
52953082--52953513	45	9.8	43	72	15	260	25	24	21	29	1.99
52952913--52953432	219	2.4	219	93	0	866	26	23	20	29	1.99
52953301--52953522	92	2.5	92	85	4	301	24	24	22	28	1.99
52955005--52955199	98	2.0	98	92	0	327	37	24	10	27	1.88
52967323--52967358	17	2.1	17	100	0	72	58	11	8	22	1.59
52971440--52971838	110	3.6	110	88	6	580	36	16	18	29	1.92
52971816--52972517	113	6.2	114	88	6	1005	27	15	14	43	1.85
52986127--52986443	119	2.7	120	95	1	582	42	1	5	49	1.36
52986546--52986580	18	2.0	17	88	5	52	45	0	0	54	0.99
52986379--52986686	157	2.0	157	95	0	553	47	4	3	44	1.40
52986816--52986883	16	4.2	16	98	0	118	38	33	0	27	1.57
52987220--52987280	19	3.0	19	77	18	61	31	3	0	65	1.09
52990997--52991087	43	2.1	43	86	6	123	35	10	9	43	1.73
52992008--52992067	18	3.2	19	76	23	56	48	0	0	51	1.00
52992450--52992540	43	2.1	43	87	2	130	34	10	9	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52992944--52993117	43	4.1	43	85	4	246	26	18	26	28	1.98
52992950--52993106	83	1.9	83	93	0	269	27	19	25	28	1.98
52993527--52993742	43	5.1	43	81	3	258	24	16	26	32	1.96
52996005--52996030	13	2.0	13	100	0	52	30	23	23	23	1.99
52998559--52998951	161	2.4	162	85	2	540	25	21	17	36	1.94
53006384--53006479	30	3.2	30	92	2	156	55	10	8	26	1.62
53013545--53013575	14	2.2	14	94	0	53	48	12	0	38	1.42
53023326--53023357	3	10.7	3	100	0	64	31	0	0	68	0.90
53031806--53031834	12	2.3	13	94	5	51	75	0	0	24	0.80
53033164--53033216	23	2.4	22	76	20	56	9	18	1	69	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208