genome.fa.s18.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  182  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57191638--57191676	20	1.9	21	84	5	53	58	5	10	25	1.51
57191894--57191926	16	2.1	16	88	11	50	45	0	0	54	0.99
57203923--57203964	21	2.0	21	86	13	59	35	0	2	61	1.09
57203925--57203991	23	3.0	22	77	20	57	34	0	2	62	1.10
57206553--57206590	9	4.4	9	83	12	53	60	0	7	31	1.25
57207962--57207994	17	1.9	17	93	0	57	15	0	9	75	1.03
57209022--57209070	20	2.5	20	79	0	53	42	4	0	53	1.20
57209477--57209529	16	3.5	16	69	23	51	66	5	1	26	1.25
57209564--57209687	62	2.0	62	98	0	239	48	15	11	25	1.78
57209673--57209720	24	2.0	24	95	0	87	31	8	10	50	1.66
57214572--57214624	26	2.0	28	88	7	83	22	20	11	45	1.83
57216849--57216877	14	2.1	14	100	0	58	27	13	20	37	1.91
57219334--57219407	29	2.5	29	88	4	103	22	13	14	48	1.79
57219359--57219432	29	2.5	29	86	4	94	27	14	12	45	1.80
57227437--57227474	14	2.9	14	88	7	53	60	0	0	39	0.97
57230221--57230277	28	2.1	27	84	9	73	21	12	12	54	1.69
57231814--57231920	58	1.9	54	83	11	135	40	9	6	43	1.63
57231989--57232062	31	2.3	32	84	6	89	47	6	24	21	1.75
57232000--57232062	33	1.9	33	87	12	94	52	4	22	20	1.65
57239782--57239829	19	2.5	20	86	6	71	64	2	2	31	1.16
57239782--57239848	20	3.4	19	83	8	73	61	1	1	35	1.15
57239874--57239933	18	3.3	18	88	4	86	63	1	5	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57239971--57240026	19	2.8	21	78	10	71	67	0	7	25	1.15
57240228--57240270	20	2.2	20	95	0	77	27	6	0	65	1.18
57244158--57244251	38	2.5	38	91	0	152	27	21	18	32	1.96
57249609--57249658	24	2.1	24	100	0	100	32	20	16	32	1.94
57251186--57251383	105	1.9	105	84	2	263	27	25	13	33	1.94
57251186--57251414	105	2.2	105	82	1	262	29	24	13	32	1.94
57252198--57252343	66	2.2	66	96	0	265	51	10	25	12	1.72
57252906--57252952	18	2.6	18	83	12	53	46	2	0	51	1.13
57252910--57252952	17	2.5	17	82	17	54	44	2	0	53	1.13
57252952--57252989	19	2.0	19	89	0	58	57	2	0	39	1.12
57253553--57253620	11	6.1	11	70	14	50	32	2	2	61	1.26
57253543--57253616	23	3.2	23	70	21	73	35	5	4	55	1.42
57253543--57253650	46	2.3	46	95	0	198	32	6	5	55	1.49
57253561--57253639	23	3.5	22	74	19	81	30	3	5	60	1.36
57266872--57266940	33	2.1	33	91	5	113	42	36	7	14	1.73
57273653--57273746	19	4.8	19	74	16	77	63	3	2	30	1.21
57273637--57273755	39	3.1	36	72	21	100	64	2	3	29	1.22
57273733--57273800	18	3.8	18	82	7	77	64	2	5	26	1.30
57274066--57274137	10	7.4	10	74	12	60	30	2	2	63	1.22
57274067--57274137	29	2.4	30	79	6	83	30	2	2	63	1.23
57274066--57274137	19	3.7	19	77	3	81	30	2	2	63	1.22
57277915--57277995	38	2.1	38	84	4	101	22	20	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57280429--57280479	12	3.9	13	76	16	52	21	9	0	68	1.18
57284272--57284304	13	2.7	12	90	9	57	90	9	0	0	0.44
57284735--57284761	14	1.9	14	100	0	54	81	0	18	0	0.69
57286955--57287017	27	2.2	28	78	15	67	34	0	3	61	1.12
57287570--57287620	10	5.2	10	75	13	52	31	3	0	64	1.11
57287570--57287625	20	2.8	20	76	13	62	33	5	0	60	1.19
57287663--57287712	20	2.5	20	83	6	57	42	8	0	50	1.32
57287669--57287763	11	9.6	10	71	20	58	36	6	1	55	1.32
57287669--57287755	10	9.0	9	74	20	52	36	6	1	55	1.34
57287658--57287761	19	5.3	18	72	15	66	36	6	0	55	1.33
57288695--57288824	62	2.1	62	98	0	251	38	20	12	29	1.89
57289708--57289773	30	2.2	30	97	0	123	33	7	22	36	1.83
57290262--57290450	62	3.0	62	85	0	252	35	19	14	30	1.91
57294262--57294385	65	2.0	64	87	4	180	36	21	12	29	1.91
57296043--57296091	23	2.2	23	92	7	84	57	6	0	36	1.24
57297756--57297860	54	1.9	55	83	11	135	40	13	6	40	1.71
57297925--57297999	31	2.4	33	86	6	102	49	8	22	20	1.74
57299892--57299950	29	2.0	29	87	6	84	40	6	6	45	1.57
57300294--57300518	88	2.6	87	77	5	229	37	17	11	32	1.86
57300724--57300770	19	2.4	19	82	3	58	61	4	2	31	1.27
57300746--57300793	21	2.2	22	82	10	55	60	0	2	37	1.09
57300808--57300873	18	3.6	18	79	6	71	68	3	4	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57300914--57300965	19	2.8	19	72	13	54	63	1	5	28	1.28
57305293--57305399	38	2.8	38	86	0	151	23	19	22	34	1.96
57305995--57306309	51	6.2	50	93	0	513	29	24	14	32	1.95
57306200--57306317	50	2.6	43	80	17	155	31	24	13	30	1.94
57307286--57307585	150	2.0	150	99	0	591	37	15	7	40	1.76
57313214--57313332	57	2.1	58	85	4	161	44	18	11	25	1.83
57315038--57315077	20	2.0	20	90	9	64	55	0	0	45	0.99
57316081--57316144	27	2.3	28	81	7	69	34	0	3	62	1.11
57316769--57316837	19	3.6	19	79	11	68	34	11	0	53	1.37
57316803--57316878	39	1.9	39	82	12	93	32	9	1	56	1.39
57320291--57320334	18	2.4	18	82	14	54	15	2	2	79	0.93
57325609--57325673	33	2.0	33	82	11	80	60	3	7	29	1.40
57325959--57326004	21	2.1	22	88	4	67	47	6	2	43	1.41
57328546--57328592	20	2.3	21	78	10	53	23	2	4	70	1.16
57332829--57333035	105	2.0	104	84	3	272	28	25	14	31	1.95
57332835--57333061	105	2.2	104	81	3	249	30	24	14	30	1.94
57334160--57334185	6	4.3	6	100	0	52	46	0	0	53	1.00
57334766--57334945	17	10.8	17	67	20	69	47	9	11	31	1.72
57334767--57334819	16	3.2	16	78	5	52	45	11	11	32	1.76
57334752--57334945	18	10.6	18	68	21	93	47	9	11	31	1.72
57334863--57334934	16	4.2	17	72	19	51	47	8	12	31	1.71
57334840--57334945	18	5.9	18	73	17	96	46	9	14	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57335222--57335255	16	2.2	15	94	5	59	61	0	2	35	1.11
57335786--57335841	4	15.0	4	78	17	59	0	25	0	75	0.81
57335760--57335845	30	2.9	29	76	11	93	1	25	0	73	0.91
57335769--57335841	11	6.4	11	79	16	69	0	26	0	73	0.83
57336089--57336133	21	2.1	21	87	0	63	8	4	6	80	1.03
57336477--57336522	13	3.8	13	80	13	62	39	47	0	13	1.42
57336618--57336702	9	9.4	9	85	5	118	24	7	24	43	1.79
57337027--57337138	29	3.9	29	81	5	111	42	2	23	31	1.68
57337014--57337148	58	2.3	58	75	7	130	40	3	24	31	1.73
57337284--57337322	12	3.2	12	85	7	51	76	2	0	20	0.90
57337319--57337379	26	2.5	24	80	15	72	44	1	0	54	1.10
57337328--57337394	25	2.6	25	77	11	64	47	1	0	50	1.10
57337362--57337400	18	2.2	18	85	0	51	56	0	0	43	0.99
57337642--57337696	24	2.3	23	82	14	60	60	5	0	34	1.20
57338342--57338387	21	2.1	23	92	8	78	39	0	0	60	0.97
57339025--57339174	30	5.0	30	75	13	132	34	24	3	38	1.72
57339025--57339189	59	2.8	58	76	11	163	33	24	4	36	1.75
57349698--57349775	34	2.3	35	77	6	88	34	20	10	34	1.87
57349938--57350042	41	2.5	41	89	4	149	23	28	20	26	1.99
57350014--57350067	25	2.2	25	96	0	99	22	27	20	29	1.98
57349971--57350104	66	2.0	66	91	0	214	23	27	20	27	1.99
57350039--57350242	41	5.0	41	90	1	311	23	26	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57349938--57350146	107	1.9	108	89	2	323	23	27	20	28	1.99
57350649--57350792	76	1.9	77	81	5	175	41	15	4	37	1.69
57355369--57355449	37	2.2	37	90	2	126	19	19	20	39	1.93
57355396--57355593	45	4.4	45	90	1	301	19	19	20	40	1.91
57363774--57363986	105	2.0	105	82	3	259	28	27	14	29	1.95
57366559--57366589	14	2.2	14	100	0	62	41	19	6	32	1.77
57368437--57368566	47	2.8	47	89	2	190	23	16	27	33	1.95
57374044--57374098	28	2.0	28	92	3	94	16	1	14	67	1.32
57375899--57375925	12	2.2	12	100	0	54	70	0	0	29	0.88
57377233--57377291	24	2.7	23	82	17	81	42	0	1	55	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208