genome.fa.s18.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  102  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34287394--34287432	13	3.2	12	89	7	53	76	0	0	23	0.78
34289791--34289839	22	2.2	22	96	0	89	18	42	22	16	1.88
34291002--34291054	15	3.5	15	71	2	52	37	1	0	60	1.08
34291918--34291974	28	2.0	29	83	10	73	40	3	3	52	1.35
34297375--34297440	14	4.8	14	74	20	59	33	24	19	22	1.97
34297360--34297440	41	2.0	41	85	4	110	32	23	20	23	1.98
34299067--34299146	23	3.5	23	77	6	90	26	20	18	35	1.95
34299415--34299473	23	2.6	23	78	5	66	30	15	18	35	1.92
34301039--34301104	32	2.1	32	97	0	123	50	18	7	24	1.72
34315025--34315164	44	3.2	45	63	14	110	31	22	20	25	1.98
34314969--34315248	88	3.2	88	94	0	488	31	20	23	25	1.98
34314969--34315282	88	3.6	88	90	1	468	30	21	23	24	1.99
34321591--34321659	29	2.3	29	92	2	111	47	5	15	30	1.69
34321857--34321892	18	1.9	19	88	5	56	55	11	11	22	1.66
34322643--34322680	19	2.1	18	90	5	58	34	0	2	63	1.09
34323400--34323514	44	2.6	44	80	4	124	27	21	20	29	1.98
34323486--34323596	41	2.7	40	86	4	150	26	18	23	32	1.97
34323946--34324191	45	5.5	45	84	2	282	26	23	19	30	1.98
34323946--34324191	134	1.8	132	82	4	314	26	23	19	30	1.98
34326890--34326937	18	2.7	19	81	12	59	62	4	8	25	1.41
34331699--34331744	18	2.5	20	75	17	53	52	6	6	34	1.53
34337175--34337476	40	7.6	40	89	4	418	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34337175--34337511	120	2.8	120	84	6	359	26	21	27	25	1.99
34342388--34342422	18	1.9	18	88	0	52	51	17	14	17	1.77
34342414--34342448	12	2.9	12	86	0	52	40	20	25	14	1.90
34344038--34344069	15	2.2	14	94	5	55	31	31	0	37	1.58
34347015--34347044	12	2.4	13	88	11	53	23	6	16	53	1.66
34348128--34348179	25	2.1	25	96	0	95	30	13	25	30	1.94
34354162--34354191	12	2.4	13	88	11	53	23	6	16	53	1.66
34355868--34355952	29	2.9	29	83	0	98	16	17	37	28	1.92
34360210--34361179	113	8.6	113	91	0	1467	36	19	20	23	1.95
34360210--34361179	227	4.3	227	90	1	1462	36	19	20	23	1.95
34361448--34361488	22	1.9	21	85	5	55	12	0	46	41	1.41
34362804--34363048	123	2.0	123	100	0	490	28	18	22	30	1.97
34363656--34363717	29	2.1	30	88	8	92	29	8	20	41	1.81
34364107--34364179	21	3.3	21	67	23	60	30	5	5	58	1.43
34364723--34365352	9	74.4	9	66	19	207	43	17	2	36	1.61
34364725--34365266	25	21.6	25	74	12	280	43	17	2	36	1.61
34364837--34364914	41	1.9	41	91	0	129	41	15	3	39	1.65
34364882--34365129	41	6.2	41	83	10	280	44	16	2	37	1.59
34364758--34365347	16	36.9	16	66	20	151	44	17	1	36	1.60
34364837--34365241	225	1.8	225	95	0	729	43	16	2	37	1.61
34365143--34365233	43	2.2	40	79	13	94	46	18	1	34	1.57
34365163--34365333	92	1.8	93	86	7	249	44	18	1	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34365262--34365334	25	2.9	25	89	0	110	47	16	0	35	1.47
34364934--34365347	41	9.9	41	78	9	285	44	17	1	35	1.60
34372652--34373481	413	2.0	413	97	0	1570	33	15	15	35	1.89
34378169--34378285	60	2.0	60	96	0	216	53	12	0	33	1.39
34384720--34384779	18	3.3	18	76	17	70	13	43	1	41	1.54
34384716--34384799	36	2.3	36	82	13	102	11	42	3	41	1.59
34402181--34402223	21	2.0	22	86	4	61	25	6	25	41	1.80
34406134--34406211	22	3.4	23	76	11	63	25	5	30	38	1.78
34406174--34406216	22	1.9	23	90	4	70	25	4	32	37	1.77
34406962--34407002	20	2.0	20	100	0	82	19	19	24	36	1.95
34407025--34407091	31	2.1	32	81	13	77	31	29	11	26	1.92
34407365--34407423	30	2.0	30	83	6	75	28	15	25	30	1.96
34410959--34411002	22	2.0	22	90	0	70	29	15	18	36	1.92
34418583--34418626	19	2.3	19	92	0	70	50	2	13	34	1.55
34419551--34419667	26	4.4	26	87	1	153	41	21	19	17	1.91
34419686--34419729	21	2.1	21	95	0	79	25	4	29	40	1.75
34422502--34422552	26	2.0	26	92	3	86	56	7	9	25	1.58
34428895--34428934	20	2.1	20	86	9	57	35	2	0	62	1.09
34430037--34430117	26	3.1	26	72	0	81	30	25	8	34	1.86
34432545--34432649	25	4.2	25	86	1	77	37	20	24	18	1.94
34432583--34432694	25	4.5	25	89	0	170	37	16	26	18	1.93
34432561--34432674	50	2.3	50	85	0	147	37	18	25	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34432659--34432705	25	1.9	25	82	4	60	36	17	25	21	1.94
34433849--34433885	15	2.5	15	90	0	56	18	5	0	75	0.99
34434495--34434553	19	3.1	19	77	18	59	27	0	5	67	1.11
34434492--34434571	33	2.4	34	82	14	94	30	0	3	66	1.09
34434483--34434571	22	4.1	21	72	20	76	29	0	3	67	1.07
34440724--34440759	10	3.6	10	85	14	56	27	0	0	72	0.85
34440709--34440742	16	2.2	16	89	5	52	32	0	0	67	0.91
34440720--34440760	20	2.1	19	95	4	73	29	0	0	70	0.87
34443203--34443358	71	2.3	68	83	7	183	47	9	21	21	1.79
34443263--34443360	34	2.9	33	80	4	115	43	10	24	21	1.83
34445018--34445071	23	2.5	22	87	6	74	59	7	1	31	1.36
34445021--34445086	3	21.3	3	75	6	60	62	6	1	30	1.29
34445553--34445590	11	3.2	12	88	11	60	47	0	52	0	1.00
34448357--34448396	14	2.9	14	84	0	53	32	7	17	42	1.77
34448365--34448432	34	2.0	35	85	2	93	30	8	16	44	1.78
34448508--34448560	18	2.8	20	75	16	58	37	3	0	58	1.16
34450967--34451006	14	2.9	14	84	0	53	32	7	17	42	1.77
34450990--34451029	20	2.0	20	90	0	62	27	10	12	50	1.72
34450975--34451041	34	1.9	35	90	3	109	31	8	13	46	1.74
34450969--34451045	14	5.0	15	71	20	52	32	9	15	42	1.78
34451785--34451809	11	2.3	11	100	0	50	28	16	8	48	1.74
34452381--34452449	35	1.9	36	91	2	113	52	18	2	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34452417--34452485	27	2.5	28	81	6	79	52	20	4	23	1.64
34454884--34454940	28	2.0	28	93	0	96	47	19	10	22	1.80
34457344--34457404	5	12.2	5	85	13	81	39	0	0	60	0.97
34457593--34457640	22	2.2	22	85	7	62	68	8	22	0	1.16
34457617--34457675	30	2.0	30	82	0	73	62	5	32	0	1.17
34457998--34458041	22	1.9	24	86	9	65	52	0	22	25	1.48
34467014--34467089	23	3.3	23	83	0	107	28	26	22	22	1.99
34467307--34467345	18	2.2	17	86	13	53	46	20	0	33	1.51
34467397--34467445	22	2.2	22	96	0	89	32	2	10	55	1.45
34469563--34469638	23	3.3	23	84	0	107	30	25	21	23	1.99
34471485--34471533	24	2.0	25	88	7	75	57	14	2	26	1.48
34483362--34483386	3	8.3	3	100	0	50	32	0	0	68	0.90
34488093--34488119	6	4.5	6	100	0	54	70	14	14	0	1.17
34491914--34491970	26	2.3	25	87	6	80	40	10	1	47	1.48
34491979--34492008	15	1.9	16	93	6	53	66	20	6	6	1.38
34492043--34492099	27	2.1	27	96	0	105	33	26	28	12	1.92
34492522--34492584	19	3.3	19	68	0	63	46	3	9	41	1.52
34493194--34493269	27	2.8	27	76	4	82	19	21	34	25	1.96
34493336--34493372	16	2.4	16	90	4	58	59	5	2	32	1.34
34493610--34494002	27	15.0	27	87	6	603	54	13	0	31	1.40
34493596--34494000	77	5.3	77	88	9	612	54	13	0	31	1.40
34493610--34494084	104	4.5	106	88	6	566	54	13	0	31	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34493976--34494168	80	2.4	80	95	0	341	56	11	0	31	1.36
34493614--34494191	77	7.3	77	83	8	400	55	12	0	32	1.38
34494136--34494199	27	2.4	27	86	0	92	53	10	0	35	1.36
34495558--34495837	46	6.6	45	83	10	285	35	14	21	28	1.93
34495594--34495702	36	3.0	36	90	0	173	38	12	19	29	1.89
34497246--34497303	27	2.1	27	87	0	80	18	25	20	34	1.96
34497246--34497312	27	2.5	26	80	9	71	19	28	20	31	1.97
34497373--34497436	27	2.4	27	89	0	92	48	1	12	37	1.51
34498918--34498960	20	2.2	20	95	4	79	32	2	0	65	1.06
34499914--34500121	103	2.0	105	85	1	285	45	9	20	25	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208