genome.fa.s18.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  72  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26262022--26262190	54	2.8	63	70	22	173	51	5	1	42	1.32
26261960--26262128	59	2.8	60	71	10	166	52	2	1	42	1.27
26262067--26262139	10	7.9	10	66	17	50	56	1	0	42	1.08
26261960--26262190	120	2.0	118	93	3	394	51	4	1	42	1.32
26266223--26266500	152	1.8	154	86	2	407	42	16	9	31	1.80
26266667--26266707	18	2.3	18	84	12	57	82	4	9	2	0.89
26267167--26267241	31	2.4	31	93	0	132	28	18	13	40	1.88
26272662--26272705	19	2.4	19	92	3	72	29	0	2	68	1.02
26282184--26282323	46	3.0	46	91	0	226	29	25	8	37	1.85
26288140--26288418	125	2.2	125	91	0	452	28	17	23	31	1.97
26289884--26290018	67	2.0	67	97	0	252	28	31	18	21	1.97
26292993--26293039	23	2.0	23	100	0	94	25	17	8	48	1.74
26296250--26296297	24	2.0	24	87	0	69	12	10	2	75	1.14
26296795--26296834	14	2.9	14	88	0	62	35	5	15	45	1.68
26299718--26299758	21	2.0	21	90	0	64	19	29	21	29	1.98
26302834--26302864	14	2.2	14	100	0	62	35	45	12	6	1.68
26307959--26307988	14	2.1	14	100	0	60	33	46	13	6	1.69
26312239--26312305	20	3.5	20	73	6	50	62	2	2	31	1.25
26312239--26312324	38	2.3	37	80	7	102	61	2	3	32	1.25
26312694--26312722	7	4.1	7	100	0	58	0	0	13	86	0.58
26312773--26312817	10	4.2	10	81	13	54	22	4	0	73	1.01
26312898--26313072	9	18.9	9	67	14	72	30	5	2	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26312898--26313058	19	8.7	17	69	16	63	29	4	1	63	1.26
26313032--26313070	17	2.2	17	86	4	51	25	2	2	69	1.14
26314153--26314221	31	2.2	32	94	2	122	20	50	13	15	1.77
26316264--26316359	30	3.2	28	79	7	93	36	18	5	39	1.73
26317063--26317107	20	2.2	20	80	0	54	42	0	0	57	0.98
26318665--26318711	24	2.0	24	82	0	58	40	10	10	38	1.75
26328419--26328457	15	2.6	15	87	0	51	35	2	30	30	1.71
26340115--26340166	24	2.2	24	82	6	61	40	9	11	38	1.74
26341396--26341449	4	13.5	4	96	0	90	25	3	24	46	1.69
26345985--26346038	7	7.7	7	89	0	63	70	0	5	24	1.08
26352068--26352100	15	2.2	15	94	0	57	39	21	21	18	1.93
26361001--26361096	49	2.0	49	87	0	138	28	6	18	46	1.73
26365091--26365143	27	2.0	26	82	14	63	9	24	1	64	1.34
26367026--26367154	67	1.9	67	87	0	186	30	16	19	34	1.94
26369464--26369520	28	2.0	28	100	0	114	36	3	24	35	1.73
26371555--26371604	17	3.1	17	72	21	61	58	0	8	34	1.28
26373308--26373353	21	2.2	21	84	7	58	39	0	0	60	0.97
26373297--26373344	13	3.6	13	77	2	51	37	0	0	62	0.95
26373313--26373362	17	2.7	20	73	23	54	44	0	0	56	0.99
26374851--26374901	10	5.2	10	76	9	52	68	1	0	29	1.00
26374865--26374910	19	2.4	19	85	10	58	60	2	2	34	1.21
26378493--26378666	33	5.3	33	88	1	235	15	34	12	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26384497--26384535	20	2.0	20	89	0	60	17	25	2	53	1.56
26384561--26384590	14	2.1	14	93	0	51	3	26	10	60	1.45
26402279--26402356	29	2.7	28	84	11	104	25	15	30	28	1.96
26402309--26402874	174	3.3	174	98	0	1105	29	14	25	30	1.95
26406267--26406628	43	8.3	43	81	3	375	30	29	17	21	1.97
26406490--26406585	49	2.0	49	85	4	131	30	28	15	26	1.96
26409083--26409115	10	3.4	10	91	8	59	84	0	0	15	0.61
26410747--26411025	41	6.8	41	91	0	405	31	28	18	21	1.97
26411092--26411225	40	3.3	40	84	4	164	26	19	17	36	1.94
26411258--26411437	43	4.2	43	85	5	220	22	20	26	30	1.98
26414865--26414918	3	19.0	3	74	11	51	64	3	1	29	1.21
26433959--26434113	52	3.0	52	96	0	274	20	21	12	45	1.83
26435104--26435206	52	2.0	52	94	0	179	47	13	20	18	1.82
26435350--26435385	16	2.2	16	95	0	63	33	13	19	33	1.91
26441688--26441724	18	2.1	18	89	0	56	13	5	21	59	1.54
26442376--26442415	22	1.9	20	85	10	53	35	5	12	47	1.63
26443353--26443564	92	2.3	92	83	5	250	39	17	9	33	1.82
26443649--26443737	38	2.4	37	82	1	97	65	0	4	30	1.13
26443660--26443728	10	7.4	9	72	16	52	69	0	2	27	1.02
26443933--26444003	35	2.0	35	88	0	106	36	1	2	59	1.21
26444096--26444265	85	2.0	87	87	2	245	29	9	22	38	1.86
26446428--26446477	25	2.0	25	100	0	100	40	12	16	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26451743--26451784	14	2.8	15	86	10	59	42	0	0	57	0.99
26451745--26451783	16	2.6	16	88	8	55	43	0	0	56	0.99
26452611--26452656	20	2.3	20	80	0	56	45	2	0	52	1.13
26456807--26457072	103	2.6	104	90	3	419	19	20	29	29	1.97
26466290--26466328	19	2.0	21	85	10	55	25	10	0	64	1.25
26470129--26470429	106	2.8	106	85	4	392	46	5	13	34	1.67
26490561--26490621	24	2.6	22	76	16	61	62	1	1	34	1.15
26495167--26495253	43	2.0	44	93	2	149	32	26	14	26	1.95
26502872--26502916	22	2.0	22	100	0	90	33	0	26	40	1.57
26506519--26506567	19	2.6	19	84	9	57	75	0	4	20	0.96
26506844--26506893	21	2.5	20	80	6	55	32	2	0	66	1.03
26512830--26512877	21	2.3	22	78	10	55	6	10	8	75	1.20
26524180--26524223	19	2.3	20	84	7	56	27	22	11	38	1.88
26526791--26526819	8	3.6	8	100	0	58	72	13	0	13	1.13
26528970--26529394	86	4.9	88	90	4	555	29	22	22	24	1.99
26529656--26529882	42	5.4	43	69	13	152	30	20	22	26	1.98
26529652--26529849	42	4.6	44	72	10	169	30	22	22	24	1.99
26529652--26529858	85	2.4	86	95	3	366	31	21	22	25	1.98
26530671--26530710	20	2.0	20	85	9	55	55	25	17	2	1.55
26531589--26531620	3	10.7	3	100	0	64	31	0	0	68	0.90
26537092--26537156	11	6.0	11	75	15	64	55	1	1	41	1.18
26537126--26537157	6	5.5	6	92	7	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26537092--26537156	23	3.0	22	73	10	64	55	1	1	41	1.18
26537554--26537659	49	2.1	51	87	5	153	47	5	6	40	1.53
26538563--26538587	12	2.1	12	100	0	50	56	0	0	44	0.99
26544063--26544099	20	1.9	19	89	10	58	54	5	5	35	1.47
26545762--26545816	27	2.0	28	83	13	71	50	3	7	38	1.48
26546472--26546510	18	2.1	19	85	4	53	76	0	7	15	0.99
26549671--26549714	19	2.3	19	88	7	63	61	2	4	31	1.28
26562106--26562188	42	2.0	41	90	6	132	31	27	13	27	1.94
26566915--26566972	29	2.0	29	83	6	73	60	0	1	37	1.07
26569533--26569577	22	2.0	22	100	0	90	33	0	26	40	1.57
26573177--26573232	19	3.0	18	77	12	60	69	0	7	23	1.12
26578538--26578638	45	2.2	45	91	3	168	41	18	16	22	1.90
26579857--26579913	30	1.9	29	82	10	71	47	5	0	47	1.24
26580006--26580049	16	2.6	16	79	10	52	47	4	0	47	1.22
26587914--26587957	19	2.4	19	80	3	54	36	0	4	59	1.18
26589562--26589702	25	5.8	25	71	13	98	21	26	20	31	1.98
26589660--26589721	24	2.6	24	80	10	72	19	25	19	35	1.95
26594784--26594810	14	1.9	14	100	0	54	59	0	11	29	1.32
26596204--26596277	24	3.1	24	74	14	73	51	8	2	37	1.46
26599006--26599050	21	2.1	21	83	0	54	26	37	26	8	1.86
26599108--26599147	21	1.9	21	89	0	62	35	30	17	17	1.93
26611205--26611242	19	2.1	18	85	9	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26612864--26612956	18	5.2	18	86	0	132	29	23	15	32	1.95
26618131--26618205	30	2.5	30	88	2	105	26	12	8	53	1.65
26618131--26618221	30	3.0	30	82	7	96	28	9	6	54	1.58
26618451--26618490	20	2.0	20	90	0	62	27	10	12	50	1.72
26618436--26618502	34	1.9	35	90	3	109	31	8	13	46	1.74
26618430--26618506	14	5.0	15	71	20	52	33	9	14	42	1.77
26620855--26620921	34	1.9	35	93	3	118	46	11	8	32	1.72
26623429--26623481	19	2.6	19	82	8	61	43	1	0	54	1.11
26623718--26623755	13	2.9	13	96	0	67	39	23	7	28	1.83
26624116--26624151	10	3.7	10	88	3	56	2	27	0	69	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208