genome.fa.s18.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  108  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35647084--35647135	27	1.9	27	84	7	70	44	0	9	46	1.36
35652649--35652805	42	3.8	41	93	1	242	34	21	21	22	1.97
35653792--35653831	19	2.0	20	85	4	55	20	0	10	70	1.16
35661724--35661751	12	2.3	12	100	0	56	7	25	7	60	1.48
35662335--35662399	34	1.9	34	93	0	112	32	18	16	32	1.94
35662453--35662519	28	2.4	27	80	7	80	29	20	20	28	1.98
35662424--35662516	15	6.3	15	70	7	57	27	20	22	29	1.98
35664267--35664313	21	2.2	21	80	0	58	27	6	10	55	1.58
35667590--35667614	6	4.2	6	100	0	50	68	0	16	16	1.22
35669234--35669843	88	6.9	88	80	3	580	29	20	23	26	1.99
35669233--35669843	177	3.4	177	83	2	699	29	20	23	26	1.99
35669636--35669882	90	2.8	90	81	4	270	27	24	23	24	2.00
35669874--35670351	132	3.6	132	85	4	678	30	19	24	25	1.98
35670338--35670495	47	3.2	50	85	6	234	37	21	15	25	1.93
35670968--35671037	19	3.6	19	76	3	68	54	1	28	15	1.50
35671836--35671950	23	4.9	24	76	12	96	32	6	4	56	1.46
35671798--35671994	24	8.5	23	73	9	134	34	6	4	55	1.45
35672201--35672229	10	2.7	11	89	10	51	24	0	0	75	0.80
35674803--35674849	23	2.0	23	91	0	76	42	21	4	31	1.72
35675989--35676096	36	3.0	36	90	4	157	34	19	11	35	1.87
35675995--35676104	35	3.1	36	89	5	161	32	20	10	36	1.87
35676766--35676806	18	2.2	19	91	8	66	4	9	0	85	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35683448--35683486	19	2.1	19	90	0	60	33	2	2	61	1.23
35689535--35689708	32	5.5	32	79	0	197	38	20	20	20	1.94
35689536--35689708	64	2.7	64	86	2	242	38	20	20	20	1.94
35689723--35689787	27	2.5	26	85	9	96	38	23	20	18	1.93
35689907--35690081	27	6.6	26	79	7	104	24	20	18	36	1.95
35689934--35690081	79	1.9	80	88	1	226	24	20	18	35	1.95
35689934--35690079	53	2.7	53	85	7	197	23	20	19	36	1.95
35690552--35690617	18	3.5	18	70	6	51	36	0	1	62	1.05
35692834--35692903	27	2.6	27	88	0	113	22	24	20	32	1.97
35696061--35696257	42	4.7	41	82	6	198	32	24	16	26	1.96
35699265--35699449	95	1.9	95	91	0	298	30	21	22	25	1.99
35700753--35700829	29	2.5	31	79	8	95	22	23	10	44	1.83
35711164--35711235	29	2.5	28	84	4	81	23	30	8	37	1.84
35712796--35712838	22	2.0	22	81	9	52	48	13	2	34	1.56
35714591--35714622	17	1.9	17	93	6	57	75	3	21	0	0.95
35717392--35717989	47	12.6	47	92	2	971	33	8	28	29	1.87
35717392--35717933	96	5.7	96	96	1	993	33	8	28	29	1.86
35717392--35717989	143	4.2	142	92	2	968	33	8	28	29	1.87
35721513--35721541	15	1.9	15	100	0	58	79	20	0	0	0.74
35727113--35727204	48	1.9	48	97	0	175	32	0	18	48	1.48
35727134--35727169	13	2.8	13	91	4	56	33	0	16	50	1.46
35729642--35729787	50	2.9	50	78	9	163	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35736249--35736273	7	3.6	7	100	0	50	44	0	28	28	1.55
35737354--35737537	66	2.8	66	81	0	215	22	26	24	26	2.00
35741095--35741152	19	3.0	19	77	10	55	36	5	1	56	1.32
35741097--35741141	20	2.2	20	84	7	56	33	4	0	62	1.15
35747221--35747446	120	1.9	120	92	1	382	54	12	11	20	1.69
35750939--35750989	16	3.2	16	85	0	66	45	5	23	25	1.75
35751147--35751222	22	3.6	21	73	10	75	46	1	1	51	1.17
35751169--35751228	16	4.2	16	66	27	53	46	1	0	51	1.10
35751169--35751271	38	2.6	38	82	13	118	47	2	0	48	1.23
35751161--35751273	41	2.8	39	82	12	124	48	2	1	46	1.26
35751169--35751304	41	3.5	38	77	15	118	52	2	0	44	1.18
35755023--35755108	26	3.4	25	80	15	90	23	24	20	31	1.98
35755270--35755308	20	2.0	20	89	0	60	33	5	20	41	1.74
35761415--35761527	22	5.0	22	81	6	127	17	26	17	38	1.92
35761402--35761503	47	2.2	47	92	3	170	16	26	20	36	1.94
35762547--35762865	159	2.0	161	87	1	462	50	14	15	20	1.78
35765996--35766021	11	2.4	11	100	0	52	19	0	15	65	1.27
35766276--35766303	13	2.2	13	100	0	56	50	21	0	28	1.49
35766202--35766406	83	2.5	82	89	2	302	50	14	6	28	1.67
35766484--35766937	157	2.9	156	81	8	546	32	13	17	37	1.88
35769178--35769292	45	2.4	49	82	15	166	27	53	0	19	1.46
35769211--35769287	24	3.3	24	67	10	79	31	49	0	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35769198--35769292	45	2.1	45	96	0	172	27	52	0	20	1.46
35771715--35771751	9	4.0	9	89	3	56	21	2	8	67	1.29
35774799--35774979	48	3.8	48	92	2	310	48	7	8	36	1.61
35774799--35774973	95	1.8	96	97	1	334	47	6	8	37	1.61
35778197--35778403	92	2.3	91	86	5	274	45	3	3	46	1.39
35778331--35778378	26	1.9	25	84	16	64	45	0	2	52	1.12
35778457--35778667	66	3.4	63	69	21	192	41	3	6	48	1.44
35778419--35778711	120	2.4	120	93	3	493	43	2	4	49	1.38
35778544--35778595	15	3.6	15	80	12	56	44	0	1	53	1.11
35778673--35778714	15	2.7	16	82	14	52	45	0	2	52	1.13
35778664--35778705	15	2.9	15	82	10	52	47	0	0	52	1.00
35778648--35778934	153	1.9	153	94	0	502	47	3	4	44	1.41
35785850--35785910	29	2.2	28	82	5	70	22	9	16	50	1.74
35786114--35786163	22	2.3	22	93	6	84	30	34	0	36	1.58
35786190--35786227	19	2.1	19	95	5	69	34	5	0	60	1.19
35786197--35786261	10	6.5	10	73	7	60	33	1	0	64	1.03
35786197--35786261	31	2.2	30	88	5	96	33	1	0	64	1.03
35801511--35801560	22	2.3	22	93	6	84	30	34	0	36	1.58
35801587--35801623	19	2.1	19	90	10	60	35	5	0	59	1.20
35801594--35801655	9	6.6	9	73	10	52	35	1	0	62	1.05
35801594--35801655	29	2.2	28	88	2	88	35	1	0	62	1.05
35803983--35804624	29	22.3	29	86	4	854	42	24	0	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35804017--35804059	23	1.9	22	85	4	59	44	23	0	32	1.54
35803970--35804633	115	5.8	114	84	7	752	42	23	0	32	1.61
35807814--35808100	124	2.3	125	93	3	492	31	21	17	29	1.96
35808276--35808342	30	2.3	29	82	5	80	44	13	16	25	1.84
35815067--35815110	21	2.2	20	83	4	52	63	6	4	25	1.38
35825204--35825274	30	2.4	30	83	9	83	47	1	4	46	1.30
35825219--35825284	30	2.2	30	78	10	73	51	1	1	45	1.19
35839585--35839867	121	2.3	122	89	7	441	31	21	17	28	1.96
35840042--35840107	29	2.3	29	82	7	80	45	13	16	24	1.84
35846801--35846844	21	2.2	20	83	4	52	63	6	4	25	1.38
35857303--35857340	20	2.0	19	85	10	51	39	7	0	52	1.31
35865474--35865525	27	1.9	27	96	0	95	7	26	5	59	1.48
35867793--35867843	13	3.9	13	86	0	75	41	21	5	31	1.77
35869989--35870013	6	4.2	6	100	0	50	0	16	0	84	0.63
35880426--35880466	9	4.6	9	100	0	82	36	29	9	24	1.87
35880471--35880628	37	4.3	37	90	2	223	47	13	5	33	1.65
35880510--35880607	17	5.4	17	64	13	52	50	13	4	32	1.60
35884192--35884227	7	4.9	7	87	12	54	27	27	13	30	1.94
35884192--35884230	16	2.6	15	88	11	62	30	25	12	30	1.93
35884196--35884230	16	2.2	16	95	5	63	31	22	11	34	1.90
35885230--35885320	37	2.5	37	81	0	101	41	24	15	18	1.89
35887856--35887915	21	2.9	21	80	7	61	55	6	3	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35888130--35888154	12	2.1	12	100	0	50	16	0	24	60	1.36
35893622--35893665	18	2.4	18	84	0	61	13	11	43	31	1.80
35896086--35896241	42	3.7	41	69	17	113	26	17	25	30	1.97
35904924--35904980	21	2.7	21	83	5	71	21	26	15	36	1.93
35904937--35904980	21	2.0	22	91	4	72	22	27	15	34	1.95
35905942--35906000	23	2.5	24	78	16	68	59	1	0	38	1.08
35905945--35906002	22	2.5	23	81	10	66	58	1	0	39	1.08
35905948--35906012	22	2.8	22	75	11	60	55	3	1	40	1.25
35907944--35908138	98	2.0	98	95	0	354	36	25	10	27	1.89
35909206--35909297	19	4.8	19	91	0	157	35	15	10	38	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208