genome.fa.s18.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  146  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47601750--47601885	42	3.2	43	82	3	123	16	31	32	19	1.94
47602326--47602494	42	4.0	42	85	5	223	17	29	33	18	1.95
47602326--47602494	85	2.0	85	84	4	225	17	29	33	18	1.95
47602703--47602776	24	3.1	24	82	3	96	9	41	31	17	1.81
47602713--47602776	23	2.7	23	85	2	83	9	42	31	17	1.81
47602879--47603801	42	21.7	42	82	4	985	15	27	35	20	1.93
47602878--47603801	85	10.9	85	82	5	1012	15	27	36	20	1.93
47602879--47603801	424	2.2	423	85	4	1234	15	27	35	20	1.93
47604406--47604574	42	4.0	41	83	5	194	18	30	33	18	1.95
47604406--47604567	85	1.9	85	86	7	231	17	29	33	19	1.94
47609927--47610000	24	3.1	24	92	3	123	9	41	33	14	1.79
47609927--47609990	11	5.5	11	73	10	56	9	39	35	15	1.80
47609933--47609996	23	2.7	23	92	2	101	10	43	29	15	1.81
47610095--47610894	42	18.8	42	83	3	904	15	27	36	20	1.93
47610095--47610894	85	9.4	84	83	3	915	15	27	36	20	1.93
47610098--47610894	212	3.7	211	84	3	992	15	27	36	20	1.93
47617599--47617750	42	3.6	41	86	4	196	19	34	30	15	1.93
47618219--47618361	43	3.4	42	78	6	126	18	30	30	20	1.97
47618223--47618387	42	3.9	43	78	8	151	20	28	30	20	1.97
47630624--47630775	42	3.6	42	87	0	196	19	32	30	17	1.95
47630620--47630775	84	1.8	85	87	1	233	19	32	30	17	1.96
47631244--47631386	43	3.4	42	75	6	117	20	29	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47631642--47631685	21	2.0	22	86	4	63	11	9	18	61	1.55
47637780--47637852	24	3.1	24	70	4	76	15	38	27	19	1.91
47637946--47638745	42	18.8	42	85	3	994	14	27	36	20	1.92
47637946--47638745	85	9.4	84	85	3	1014	14	27	36	20	1.92
47637949--47638745	212	3.7	211	85	3	1064	14	27	36	20	1.92
47643340--47643459	43	2.8	42	85	7	161	15	28	35	20	1.93
47643673--47643747	24	3.1	24	88	0	105	12	36	28	24	1.91
47643873--47644004	43	3.1	42	83	2	147	15	36	31	16	1.90
47643892--47644004	42	2.7	43	87	1	156	15	36	31	15	1.90
47644473--47644641	42	4.0	42	82	8	200	19	30	31	18	1.96
47644473--47644634	85	1.9	85	82	7	204	18	29	32	19	1.95
47644851--47644928	24	3.3	24	80	3	95	10	39	30	19	1.85
47645013--47645115	42	2.4	43	90	1	154	19	33	31	15	1.93
47645013--47645123	43	2.6	43	88	1	125	19	33	30	16	1.94
47645584--47645752	42	4.0	42	84	6	209	20	30	31	17	1.96
47645962--47646038	23	3.3	23	83	10	102	10	36	29	23	1.88
47646138--47646269	43	3.1	43	86	2	185	18	32	30	18	1.95
47646739--47646845	43	2.5	42	81	6	117	18	28	31	20	1.96
47646797--47646906	42	2.6	43	75	12	111	25	28	29	17	1.97
47647112--47647180	23	3.0	23	77	6	77	7	34	34	23	1.82
47647248--47647884	41	15.8	41	74	18	517	14	29	35	20	1.92
47655878--47655958	40	2.0	40	88	4	119	16	28	35	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47656178--47656240	21	3.0	21	79	11	58	4	38	36	20	1.74
47656178--47656240	20	3.0	21	77	11	58	4	38	36	20	1.74
47656426--47656661	72	3.3	73	87	10	328	11	33	33	20	1.89
47656401--47656661	36	7.2	39	75	18	235	11	33	34	20	1.89
47661117--47661870	42	18.0	41	75	12	551	17	34	32	14	1.91
47661117--47661870	85	9.0	83	80	8	782	17	34	32	14	1.91
47661875--47661953	24	3.3	24	85	5	106	20	35	37	6	1.78
47662172--47662370	42	4.7	42	75	7	179	20	34	27	17	1.95
47670233--47671048	85	10.0	81	77	11	416	18	34	31	15	1.92
47670233--47671048	42	20.0	41	78	12	513	18	34	31	15	1.92
47670298--47670971	279	2.4	284	82	10	762	17	34	32	15	1.92
47677523--47677877	180	2.0	178	87	3	507	28	27	25	18	1.98
47684351--47685152	43	19.1	42	79	9	623	18	32	31	17	1.94
47684393--47684485	42	2.2	42	84	1	125	21	38	26	12	1.90
47684464--47685037	126	4.5	128	81	8	692	17	31	33	17	1.93
47684374--47685152	126	6.2	127	79	9	676	18	32	31	17	1.94
47685453--47685499	24	2.0	24	95	0	85	21	38	36	4	1.73
47701925--47702764	43	20.2	42	71	12	393	17	35	31	15	1.92
47701945--47702776	85	10.0	84	75	11	657	18	34	31	15	1.92
47701925--47702776	128	6.8	123	72	13	518	18	35	31	15	1.92
47702084--47702434	39	8.8	40	68	15	133	18	35	31	15	1.92
47702480--47702767	44	6.7	43	72	12	209	16	34	32	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47702792--47702847	22	2.5	22	86	11	87	19	39	35	5	1.75
47703149--47703260	44	2.6	43	81	9	129	23	35	25	16	1.94
47723388--47723433	24	2.0	23	82	4	56	21	34	26	17	1.95
47738786--47739232	43	10.5	42	85	3	536	19	36	28	14	1.92
47738778--47739232	85	5.3	85	84	2	567	20	36	28	14	1.92
47738811--47739229	212	2.0	213	89	2	655	19	36	28	14	1.92
47739327--47739404	24	3.3	24	78	3	86	21	28	37	12	1.90
47745680--47745848	42	4.0	42	82	5	187	18	31	30	19	1.96
47746319--47746480	42	3.8	42	83	3	191	19	33	30	17	1.94
47746315--47746498	85	2.2	85	79	7	203	17	33	31	17	1.94
47748082--47748384	40	7.6	40	89	2	396	27	28	20	24	1.99
47769259--47769959	42	16.8	42	84	5	843	14	27	36	20	1.92
47769259--47769959	85	8.4	83	85	6	868	14	27	36	20	1.92
47779392--47779535	42	3.4	42	86	0	189	19	34	29	15	1.93
47780008--47780172	42	3.9	42	80	5	188	18	28	33	18	1.95
47780010--47780167	85	1.8	86	83	1	210	18	27	34	19	1.95
47780386--47780438	11	4.5	12	77	11	56	9	41	33	15	1.79
47780384--47780482	23	4.2	24	84	5	105	12	42	29	16	1.84
47780394--47780480	23	3.7	23	89	1	120	12	42	28	16	1.84
47783580--47783606	13	2.1	13	100	0	54	33	29	7	29	1.85
47788756--47788986	115	2.0	115	87	1	329	32	19	17	30	1.95
47799071--47799151	25	3.2	25	85	0	108	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47801966--47802032	16	4.0	18	88	7	72	20	1	4	73	1.09
47801989--47802040	4	13.0	4	100	0	104	25	0	0	75	0.81
47802274--47802330	3	18.7	3	75	10	53	28	3	3	64	1.26
47802307--47802344	15	2.4	17	86	13	62	26	10	2	60	1.43
47802622--47802926	27	11.3	26	82	5	288	41	17	16	24	1.89
47802622--47802911	54	5.4	54	85	1	359	42	17	15	24	1.88
47802622--47802926	81	3.8	80	80	5	344	41	17	16	24	1.89
47803109--47803172	26	2.5	26	84	0	83	18	20	20	40	1.91
47806260--47806317	24	2.5	22	76	15	64	62	6	1	29	1.31
47809740--47809787	21	2.3	21	75	13	53	29	41	12	16	1.85
47825637--47825690	27	1.9	27	81	7	63	40	18	1	38	1.61
47828921--47828992	36	2.0	36	97	0	135	44	18	11	26	1.83
47832343--47832395	21	2.5	21	81	3	61	37	7	32	22	1.82
47832356--47832399	21	2.1	21	91	0	70	31	4	36	27	1.77
47838653--47838731	29	2.7	29	84	3	97	20	26	15	37	1.92
47838579--47838748	29	5.9	28	70	8	90	22	24	15	37	1.93
47841156--47842273	371	3.0	371	92	0	1837	30	10	21	37	1.87
47845413--47845620	28	7.5	28	95	2	350	31	28	13	25	1.94
47845413--47845645	55	4.2	55	92	1	358	31	29	13	25	1.94
47845413--47845620	111	1.9	110	93	1	362	31	28	13	25	1.94
47846096--47846121	12	2.2	12	100	0	52	42	0	7	50	1.31
47853739--47853971	28	8.4	28	91	2	337	32	29	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47853739--47853971	55	4.2	55	92	1	367	32	29	13	25	1.93
47853739--47853946	111	1.9	110	94	1	371	31	28	13	25	1.94
47854422--47854447	12	2.2	12	100	0	52	42	0	7	50	1.31
47856524--47856559	7	5.1	7	96	0	63	38	0	2	58	1.13
47858233--47858310	37	2.1	37	100	0	156	37	15	11	35	1.84
47859184--47859307	34	3.6	34	70	18	103	24	23	21	30	1.99
47859190--47859346	70	2.2	70	87	2	235	24	22	23	29	1.99
47860289--47860414	55	2.3	54	80	9	123	25	23	29	21	1.99
47863298--47863611	150	2.1	149	88	6	458	44	4	10	40	1.58
47863840--47863865	6	4.3	6	100	0	52	46	0	53	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208