genome.fa.s18.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  114  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37186422--37186479	31	1.9	30	85	3	80	8	18	5	67	1.37
37187221--37187254	17	1.9	18	88	5	52	20	5	11	61	1.50
37192465--37192505	16	2.6	16	81	11	50	70	0	17	12	1.16
37192495--37192538	11	4.0	11	82	8	54	75	0	25	0	0.81
37192497--37192557	28	2.1	29	82	8	72	70	4	24	0	1.07
37194399--37194454	24	2.3	24	93	0	103	32	10	26	30	1.90
37194784--37195576	44	17.8	45	75	7	530	31	18	22	27	1.97
37194782--37195562	178	4.4	177	80	5	738	31	18	21	28	1.97
37194960--37195398	133	3.3	132	85	3	506	32	17	22	27	1.97
37194782--37195562	89	8.8	88	72	9	353	31	18	21	28	1.97
37195640--37196059	194	2.2	194	88	1	610	30	18	21	28	1.97
37195844--37195951	51	2.3	47	84	9	130	28	17	26	26	1.98
37198845--37198887	18	2.3	18	84	8	50	55	2	4	37	1.33
37199284--37199315	7	4.7	7	96	3	57	40	0	0	59	0.97
37199284--37199326	13	3.3	13	84	12	61	44	0	0	55	0.99
37199308--37199346	17	2.4	17	86	4	53	61	0	0	38	0.96
37202337--37202384	21	2.2	22	78	14	55	50	4	4	41	1.41
37215918--37216053	56	2.4	55	80	9	159	44	8	10	37	1.68
37216057--37216692	29	22.2	29	88	3	932	24	0	25	50	1.49
37216057--37216692	57	11.1	57	95	1	972	24	0	25	50	1.49
37216740--37216788	25	1.9	25	87	4	71	38	16	4	40	1.67
37216902--37216954	24	2.2	24	86	0	70	1	26	30	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217209--37217254	18	2.6	18	82	0	56	39	8	30	21	1.84
37217899--37217923	7	3.6	7	100	0	50	60	12	0	28	1.32
37219040--37219094	22	2.5	22	100	0	110	40	0	30	29	1.57
37225987--37226116	35	3.5	38	68	11	106	23	16	23	36	1.94
37226634--37226681	24	2.0	23	84	4	60	35	0	12	52	1.40
37227245--37227349	54	1.9	54	86	0	147	24	20	36	19	1.95
37237016--37237206	68	2.8	68	84	1	249	25	21	16	36	1.94
37241778--37241840	19	3.1	19	79	9	63	42	0	6	50	1.27
37246326--37246379	10	5.4	10	88	6	83	72	0	0	27	0.85
37246326--37246381	19	2.9	19	94	2	94	69	0	0	30	0.89
37251292--37251416	50	2.4	52	84	4	155	24	25	13	36	1.92
37252793--37252820	14	2.0	14	100	0	56	35	0	14	50	1.43
37280970--37281021	25	2.1	25	82	7	61	32	25	26	15	1.95
37285223--37285281	19	3.2	17	79	20	57	66	5	0	28	1.13
37297297--37297329	3	11.0	3	100	0	66	66	0	33	0	0.92
37301624--37301700	38	2.0	38	100	0	154	61	10	12	15	1.57
37304197--37304221	13	1.9	13	100	0	50	48	20	0	32	1.50
37305671--37305781	41	2.7	41	81	5	134	22	26	19	31	1.98
37305669--37305830	41	4.0	40	72	9	96	24	24	20	30	1.99
37313500--37313577	41	1.9	41	81	0	93	23	21	25	29	1.99
37316434--37316544	41	2.7	41	88	0	159	23	28	18	28	1.98
37334205--37334315	41	2.7	41	88	0	159	23	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37337603--37337837	47	5.1	47	66	20	138	45	2	4	47	1.36
37337815--37337860	12	3.3	15	74	25	55	41	0	0	58	0.98
37337749--37337904	47	3.4	47	70	18	164	46	2	4	46	1.36
37337589--37337894	91	3.4	91	93	1	506	46	2	4	46	1.37
37337956--37338002	24	2.0	24	84	15	64	40	6	2	51	1.39
37338022--37338057	16	2.2	17	90	9	58	44	0	0	55	0.99
37338213--37338309	47	2.1	47	85	9	130	40	27	1	30	1.63
37338297--37338344	16	3.0	16	90	0	69	25	31	2	41	1.67
37344345--37344377	5	6.8	5	96	3	59	57	0	0	42	0.98
37344896--37344937	15	2.9	15	86	6	61	26	0	0	73	0.83
37344899--37344955	28	2.0	29	82	3	71	31	0	0	68	0.90
37372253--37372317	12	5.8	12	71	14	50	6	26	0	67	1.13
37372253--37372317	23	2.9	23	80	13	82	6	26	0	67	1.13
37384083--37384270	50	3.7	50	77	9	175	27	18	29	24	1.98
37393630--37393673	18	2.4	19	79	20	58	43	0	13	43	1.44
37394953--37394993	21	2.0	21	85	0	55	29	19	36	14	1.92
37403304--37403385	20	4.2	19	79	10	85	48	12	8	30	1.70
37405313--37405347	17	2.1	17	94	5	63	45	0	11	42	1.40
37405455--37405518	20	3.0	22	86	6	80	46	9	9	34	1.68
37405541--37405586	20	2.3	20	84	0	56	39	2	10	47	1.51
37406597--37406642	8	5.6	8	92	5	74	69	0	0	30	0.89
37406596--37406645	9	5.8	9	92	4	77	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37406597--37406643	17	2.8	17	93	3	78	70	0	0	29	0.88
37407467--37407521	29	2.0	27	82	7	65	60	3	7	29	1.41
37425683--37425719	18	2.2	18	85	9	51	45	16	2	35	1.61
37432125--37432159	18	2.0	17	88	5	52	34	17	0	48	1.47
37433515--37433579	19	3.3	19	75	12	69	60	1	1	36	1.16
37433510--37433572	9	6.9	9	74	15	58	63	1	1	33	1.13
37433514--37433588	38	1.9	39	89	2	116	60	1	1	37	1.14
37433527--37433587	20	3.2	19	69	15	54	57	1	1	39	1.18
37433710--37433757	10	5.0	10	82	10	64	35	2	2	60	1.20
37433711--37433757	19	2.5	19	86	10	69	34	2	2	61	1.20
37434343--37435523	598	2.0	596	89	2	1789	23	15	26	33	1.95
37435739--37435900	53	3.0	55	84	4	231	50	17	7	24	1.71
37438706--37438803	28	3.5	28	90	2	135	31	28	13	26	1.94
37455437--37455483	26	2.0	24	84	16	62	44	17	2	36	1.60
37459190--37459219	13	2.2	13	94	5	51	76	0	0	23	0.78
37459463--37459509	20	2.3	20	85	0	58	51	8	8	31	1.63
37461925--37461971	24	1.9	25	83	12	62	46	12	6	34	1.67
37466371--37466440	20	3.4	20	75	11	70	10	22	22	44	1.83
37467518--37467571	27	2.0	28	85	10	76	44	5	1	48	1.37
37469733--37469797	20	3.2	20	74	8	76	20	16	23	40	1.92
37469731--37469788	22	2.8	21	78	5	64	22	18	24	34	1.96
37473677--37473773	43	2.3	43	83	1	124	27	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37476739--37476817	26	3.0	25	88	0	104	35	25	21	17	1.95
37476747--37476817	26	2.7	26	93	0	115	35	25	22	16	1.95
37476986--37477124	27	5.1	27	86	3	199	20	18	20	40	1.92
37483595--37483627	17	2.0	17	88	5	50	24	30	6	39	1.79
37484594--37484699	26	4.1	26	83	0	104	34	23	21	19	1.96
37484870--37485011	27	5.3	27	82	3	162	20	15	18	45	1.85
37484861--37485011	81	1.9	81	80	5	180	21	15	18	44	1.86
37484868--37485003	54	2.5	54	84	2	184	20	16	18	44	1.86
37488865--37488914	20	2.5	20	96	0	91	22	22	4	52	1.64
37494253--37494302	23	2.2	23	88	0	73	18	26	20	36	1.95
37496208--37496322	20	5.8	20	71	11	83	41	10	14	33	1.80
37496218--37496312	40	2.4	40	83	3	120	43	8	15	32	1.77
37498603--37498668	32	2.0	33	83	13	84	28	7	9	54	1.59
37501788--37502128	168	2.0	172	95	2	627	26	18	11	43	1.84
37505594--37505618	3	8.3	3	100	0	50	64	0	0	36	0.94
37506161--37506221	31	2.0	31	90	6	97	44	11	1	42	1.50
37507738--37507816	33	2.4	33	85	4	106	39	27	10	22	1.86
37512650--37512681	15	2.1	15	100	0	64	50	0	18	31	1.48
37514637--37514683	20	2.6	17	76	23	51	46	4	2	46	1.34
37516527--37516601	11	6.8	11	71	24	52	53	2	1	42	1.23
37516501--37516566	25	2.6	25	77	13	64	50	4	3	42	1.38
37516490--37516601	36	3.1	37	76	13	108	51	4	1	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37523599--37523760	12	13.2	12	68	20	52	50	1	3	44	1.28
37523568--37523663	38	2.5	39	82	11	103	52	2	3	42	1.29
37523711--37523743	11	2.9	11	95	4	57	45	0	0	54	0.99
37523681--37523760	11	6.8	12	77	17	53	51	1	1	46	1.17
37525349--37525373	12	2.1	12	100	0	50	20	8	24	48	1.76
37528101--37528270	40	4.3	40	88	0	225	25	28	21	24	1.99
37535988--37536157	40	4.3	40	88	0	225	25	28	21	24	1.99
37547839--37548062	40	5.6	40	81	8	217	25	29	20	24	1.99
37547839--37548063	80	2.8	80	78	6	251	26	28	20	24	1.99
37547839--37548061	79	2.8	79	78	9	204	26	29	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208