genome.fa.s18.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  187  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58613887--58613938	23	2.3	23	90	6	79	42	9	13	34	1.77
58613973--58614024	23	2.3	23	90	6	79	42	9	13	34	1.77
58613860--58614034	86	2.0	86	98	0	341	42	12	13	30	1.82
58618481--58618518	20	1.9	20	94	0	67	15	26	13	44	1.83
58622927--58623193	135	2.0	135	81	4	315	30	19	16	34	1.93
58627037--58627075	20	2.0	20	94	0	69	48	2	0	48	1.15
58627624--58627842	108	2.0	108	84	6	284	34	14	15	35	1.88
58634916--58634970	26	2.1	27	83	10	69	72	3	3	20	1.15
58637026--58637078	17	3.1	17	77	2	61	54	0	1	43	1.11
58637189--58637218	9	3.3	9	90	0	51	40	10	3	46	1.54
58637966--58638033	33	2.1	33	100	0	136	14	32	7	45	1.73
58645021--58645081	28	2.2	28	85	5	81	45	0	3	50	1.17
58645160--58645358	66	3.2	64	68	19	186	41	3	6	49	1.44
58645122--58645419	120	2.5	120	94	1	517	42	2	5	50	1.37
58645195--58645382	61	3.1	61	69	17	192	42	1	6	48	1.39
58645247--58645298	15	3.6	15	80	12	56	44	0	1	53	1.11
58645376--58645417	15	2.7	16	82	14	52	45	0	2	52	1.13
58645367--58645408	15	2.9	15	82	10	52	47	0	0	52	1.00
58645631--58645679	16	3.1	16	90	0	80	22	34	6	36	1.79
58646516--58646569	15	3.6	15	80	7	56	48	0	51	0	1.00
58646546--58646613	27	2.6	26	81	9	84	61	0	38	0	0.96
58646634--58646680	20	2.3	20	82	7	60	72	2	25	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58646580--58646666	16	5.1	16	69	17	59	65	1	33	0	1.00
58650046--58650113	33	2.1	33	100	0	136	50	11	8	29	1.69
58650805--58651041	103	2.2	105	82	4	280	35	14	20	29	1.92
58651052--58651485	109	4.1	103	75	11	303	32	16	18	32	1.93
58651281--58651493	109	2.0	106	87	2	309	29	16	20	33	1.94
58652842--58653913	357	3.0	357	97	0	2036	27	18	27	26	1.98
58655686--58655786	52	1.9	52	90	4	159	33	3	2	59	1.31
58656550--58656746	96	2.1	94	84	7	256	28	18	19	33	1.95
58656645--58656934	105	2.7	106	78	9	322	32	17	18	31	1.95
58659071--58659162	22	4.1	22	69	20	64	10	1	30	57	1.40
58659492--58659576	3	28.3	3	73	17	63	29	3	1	65	1.16
58659495--58659576	24	3.4	23	74	14	76	29	3	1	65	1.17
58659492--58659576	11	7.4	11	74	10	64	29	3	1	65	1.16
58659794--58659836	15	2.6	17	78	17	54	30	0	6	62	1.21
58665706--58665883	27	6.6	27	81	3	187	26	15	28	29	1.96
58665707--58665862	82	1.9	81	86	3	224	26	16	28	28	1.96
58665703--58665883	82	2.2	81	82	2	220	26	16	28	29	1.96
58674647--58675224	44	13.1	44	73	5	416	27	17	25	29	1.97
58674642--58675222	132	4.4	132	92	0	928	27	17	25	29	1.97
58675160--58675732	134	4.3	134	95	0	984	27	21	22	28	1.99
58675272--58675717	46	9.9	46	64	13	203	27	21	23	28	1.99
58675895--58676046	40	3.8	40	81	3	196	30	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58675893--58676062	82	2.1	83	88	1	261	34	21	18	25	1.96
58675894--58676062	40	4.1	42	77	6	157	33	21	18	26	1.96
58676542--58676589	23	2.2	21	85	7	60	12	2	29	56	1.48
58676542--58676607	21	3.0	21	82	8	62	10	1	30	57	1.42
58676514--58676605	22	4.1	23	73	13	75	9	1	31	57	1.38
58676935--58677023	3	30.3	3	74	18	66	29	3	1	66	1.15
58676935--58677027	30	3.0	30	70	20	75	30	3	1	65	1.15
58677229--58677285	17	3.1	19	78	14	66	31	0	7	61	1.23
58677370--58677399	12	2.5	12	94	0	51	46	6	0	46	1.29
58678487--58678532	23	2.0	23	95	0	83	39	6	0	54	1.26
58678656--58678707	4	13.0	4	76	15	54	69	0	30	0	0.89
58678664--58678718	18	2.9	18	79	15	67	65	0	34	0	0.93
58678661--58678764	33	3.2	31	76	16	95	69	0	30	0	0.89
58678657--58678735	36	2.2	36	84	8	99	69	0	30	0	0.89
58678687--58678743	21	2.7	21	76	7	62	70	0	29	0	0.88
58678661--58678761	32	3.1	34	81	12	104	69	0	30	0	0.89
58678981--58679023	21	2.0	21	86	0	59	41	6	2	48	1.43
58679253--58679291	19	2.0	21	85	10	55	23	0	7	69	1.14
58682688--58682721	9	3.8	9	92	0	59	38	29	8	23	1.85
58683502--58683973	108	4.4	106	83	5	482	37	13	15	34	1.86
58686241--58686274	18	1.9	17	88	5	50	14	5	0	79	0.91
58686779--58687172	96	3.9	97	79	13	313	29	16	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58686673--58687281	107	5.9	104	80	11	616	30	16	14	38	1.89
58686673--58687282	104	5.9	101	80	12	527	30	16	14	38	1.89
58688284--58688736	160	2.8	160	72	13	410	49	7	13	29	1.69
58692231--58692298	3	22.7	3	96	0	127	67	30	0	1	0.99
58692372--58692410	20	2.0	21	85	10	55	66	10	0	23	1.22
58692534--58692634	27	3.7	27	89	5	134	16	28	28	25	1.97
58692684--58692731	23	2.1	23	100	0	96	58	0	8	33	1.28
58693861--58693949	27	3.3	27	82	3	90	22	30	31	15	1.95
58698212--58698258	19	2.7	18	84	12	62	61	12	0	25	1.31
58706820--58706895	31	2.5	31	82	4	100	64	2	5	27	1.28
58709114--58709171	22	2.7	21	78	5	62	24	10	0	65	1.23
58709553--58709597	21	2.1	21	87	0	63	15	8	4	71	1.28
58710271--58710302	15	2.1	15	94	0	55	21	9	6	62	1.47
58710248--58710325	38	2.1	38	92	4	131	26	14	3	55	1.56
58715852--58716141	51	5.7	51	74	11	215	27	26	17	27	1.98
58715904--58716141	102	2.3	102	87	1	361	27	27	17	26	1.98
58716457--58716514	30	1.9	30	86	6	82	31	18	5	44	1.72
58724225--58736000	905	13.0	905	94	0	20402	30	18	23	26	1.98
58736042--58736077	18	2.0	18	94	0	63	0	25	0	75	0.81
58753037--58753090	21	2.9	18	72	17	56	48	9	5	37	1.59
58756719--58756885	42	3.9	42	84	5	192	30	17	17	34	1.94
58756719--58756885	84	2.0	87	83	5	216	30	17	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58756765--58756879	21	5.5	21	74	10	101	31	16	15	36	1.90
58760959--58761023	23	3.0	22	84	8	80	40	23	16	20	1.92
58762844--58763011	43	3.9	43	83	9	200	19	19	28	32	1.96
58764090--58764150	32	1.9	32	86	6	88	36	21	21	21	1.96
58764150--58764213	26	2.5	26	86	0	83	39	23	20	17	1.92
58764355--58764397	11	3.7	11	76	11	50	51	27	6	13	1.67
58764345--58764419	24	3.1	24	88	0	105	48	22	6	22	1.74
58764503--58764669	27	6.2	27	82	3	185	24	23	19	32	1.97
58764496--58764669	54	3.2	54	81	4	208	24	23	18	32	1.97
58768430--58768475	23	2.0	24	83	12	60	41	4	2	52	1.33
58768429--58768467	20	2.0	19	90	5	60	41	2	2	53	1.28
58768474--58768545	13	5.1	14	70	20	53	52	5	0	41	1.24
58769631--58769772	69	2.1	69	97	0	266	28	27	16	26	1.97
58774293--58774332	21	1.9	21	100	0	80	35	25	22	17	1.95
58774579--58774622	12	3.7	12	81	6	54	9	22	43	25	1.82
58777607--58777655	16	3.3	15	82	5	55	42	4	14	38	1.64
58777791--58777831	3	13.7	3	89	0	64	60	2	2	34	1.23
58779882--58779913	16	2.1	16	94	5	57	15	43	15	25	1.86
58780822--58781105	3	95.7	3	71	10	172	31	7	3	58	1.41
58786281--58786313	14	2.3	15	89	5	50	27	15	33	24	1.95
58787304--58787788	44	10.8	43	74	9	357	31	17	23	27	1.97
58787304--58787788	89	5.4	89	78	8	428	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58787304--58787788	133	3.6	129	73	8	380	31	17	23	27	1.97
58789257--58789513	3	85.7	3	68	13	118	30	7	3	57	1.44
58792945--58793002	24	2.4	24	91	0	89	37	5	6	50	1.52
58796589--58796640	24	2.2	24	89	6	79	32	3	9	53	1.51
58798810--58798839	16	1.9	16	93	6	53	23	6	13	56	1.60
58804066--58804221	41	3.8	41	92	0	242	30	30	21	17	1.96
58804326--58804612	47	5.7	47	70	14	160	39	15	7	37	1.75
58804422--58804805	47	7.3	51	66	19	144	39	16	6	37	1.74
58804290--58804867	159	3.6	159	93	2	973	38	16	6	37	1.75
58804646--58804771	47	2.7	47	82	2	164	39	16	4	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208