genome.fa.s18.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  120  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39570829--39570931	25	4.1	25	83	7	113	29	24	21	25	1.99
39572538--39572580	16	2.7	16	81	0	50	13	23	6	55	1.62
39572837--39573029	50	3.7	50	79	9	201	23	26	21	27	1.99
39572837--39573023	100	1.8	105	83	6	258	22	27	20	28	1.99
39577439--39577620	30	6.1	30	77	7	190	24	20	13	41	1.88
39577463--39577620	60	2.6	60	93	0	262	23	20	13	42	1.87
39577439--39577602	90	1.8	90	84	2	222	24	20	13	42	1.88
39579715--39579750	19	1.9	19	88	5	56	25	11	8	55	1.62
39595280--39595336	28	2.0	28	93	0	96	31	8	15	43	1.78
39598636--39598763	25	5.2	25	78	1	141	27	25	23	23	2.00
39598636--39598775	50	2.8	49	88	3	192	28	25	22	23	1.99
39598648--39598775	49	2.6	50	88	3	188	28	25	21	24	1.99
39600608--39600791	79	2.3	81	80	7	216	25	22	27	25	2.00
39600607--39600791	40	4.7	40	82	6	216	24	22	27	25	2.00
39600660--39600824	79	2.1	79	82	6	192	26	20	26	26	1.99
39603022--39603060	20	2.0	20	85	10	53	12	7	30	48	1.69
39604168--39604203	11	3.3	11	96	0	63	30	0	0	69	0.89
39609099--39609166	20	3.4	20	86	11	95	29	17	29	23	1.97
39609099--39609148	10	5.1	9	82	17	64	32	16	30	22	1.95
39611788--39611848	30	2.0	30	96	0	113	32	14	27	24	1.95
39612882--39612910	14	2.0	15	93	6	51	0	6	3	89	0.57
39613773--39613882	39	2.8	39	78	0	139	31	13	29	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39618626--39618658	14	2.4	14	100	0	66	33	45	15	6	1.70
39623745--39623776	14	2.3	14	100	0	64	31	46	15	6	1.71
39627378--39627403	12	2.2	12	100	0	52	7	30	38	23	1.83
39629579--39629763	79	2.3	81	82	7	218	24	27	22	25	2.00
39629579--39629763	40	4.7	40	81	7	216	24	27	22	25	2.00
39634892--39635098	27	7.6	27	93	3	207	30	28	14	26	1.95
39634892--39635098	55	3.8	55	96	0	360	30	28	14	26	1.95
39639248--39639300	24	2.2	24	100	0	106	7	30	41	20	1.80
39640854--39641038	79	2.3	82	82	7	220	24	27	22	25	2.00
39640854--39641038	40	4.7	40	81	7	216	24	27	22	25	2.00
39643847--39643899	13	4.1	13	80	0	70	32	7	26	33	1.84
39651606--39651639	17	2.0	17	94	0	59	17	17	14	50	1.79
39653075--39653160	26	3.3	26	80	1	100	22	25	20	31	1.98
39672849--39672978	43	3.0	43	78	10	140	23	18	28	30	1.98
39688005--39688038	16	2.1	16	100	0	68	5	11	35	47	1.65
39697007--39697051	23	2.0	22	83	8	56	64	4	0	31	1.13
39697025--39697066	15	2.9	15	82	3	50	52	2	0	45	1.13
39699587--39699665	26	3.0	26	87	3	79	17	18	22	40	1.91
39699604--39699674	26	2.7	26	91	0	115	16	21	21	40	1.91
39704421--39704658	120	2.0	120	90	0	377	30	23	11	34	1.90
39709076--39709123	24	2.0	24	100	0	96	33	16	29	20	1.95
39712040--39712076	18	2.0	19	89	5	58	51	0	43	5	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39716975--39717207	106	2.2	105	87	4	333	25	27	24	21	1.99
39723706--39723759	23	2.5	20	78	21	56	35	22	0	42	1.54
39723794--39723887	45	2.1	45	89	0	143	30	24	20	24	1.98
39723893--39724028	51	2.7	51	82	7	179	31	26	15	26	1.96
39729476--39729568	45	2.1	45	91	0	150	31	22	19	26	1.98
39729563--39729810	51	4.9	51	76	6	245	31	26	15	26	1.96
39729570--39729818	50	4.9	51	78	8	233	32	27	14	25	1.95
39729577--39729810	101	2.3	101	87	2	353	31	26	15	25	1.96
39735819--39735925	26	4.1	26	83	0	115	36	21	19	22	1.95
39745267--39745334	26	2.6	26	85	0	91	33	22	19	25	1.97
39745639--39745736	29	3.4	29	81	8	112	26	35	20	17	1.94
39749446--39749566	51	2.4	49	82	5	145	25	23	18	33	1.97
39752849--39753073	40	5.7	40	81	6	206	25	20	27	26	1.99
39760316--39760539	40	5.7	40	81	6	215	25	21	27	26	1.99
39772146--39772264	39	3.1	39	86	0	157	14	26	26	32	1.94
39772152--39772300	39	3.8	39	83	7	153	16	24	24	34	1.95
39776743--39776781	18	2.1	19	86	13	55	20	15	15	48	1.81
39786841--39786869	13	2.1	14	93	6	51	10	6	13	68	1.37
39790354--39790533	28	6.5	28	93	2	285	31	28	13	26	1.94
39790354--39790533	55	3.3	55	94	1	299	31	28	13	26	1.94
39790354--39790533	83	2.2	82	92	1	297	31	28	13	26	1.94
39795376--39795415	18	2.2	18	86	4	53	12	27	0	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39796474--39796530	14	4.0	14	90	4	96	24	12	0	63	1.29
39796474--39796530	29	2.0	28	93	3	96	24	12	0	63	1.29
39796573--39796639	11	5.9	11	92	5	107	16	1	10	71	1.20
39798742--39798835	25	3.8	24	69	16	66	26	20	23	29	1.99
39802181--39802245	27	2.4	27	85	7	80	38	21	20	20	1.94
39802378--39802574	27	7.3	26	83	7	216	27	15	18	38	1.91
39802378--39802578	54	3.7	53	85	5	251	26	15	19	38	1.91
39802389--39802576	81	2.3	81	85	1	252	27	16	17	38	1.91
39802793--39802826	17	1.9	17	88	5	50	20	44	23	11	1.84
39808982--39809008	13	2.1	13	100	0	54	37	40	0	22	1.54
39809309--39809370	25	2.5	25	78	5	63	27	20	22	29	1.99
39810795--39810833	20	2.0	20	90	10	62	15	23	5	56	1.59
39811107--39811229	50	2.5	50	80	0	147	21	27	21	28	1.99
39813890--39813920	11	2.8	11	95	0	53	41	32	9	16	1.80
39815389--39815428	21	1.9	21	100	0	80	35	25	5	35	1.78
39828796--39828846	16	3.2	16	88	0	84	29	25	1	43	1.66
39829747--39829870	34	3.6	34	85	2	160	42	16	8	31	1.79
39830006--39830098	46	2.0	46	95	4	170	41	11	13	32	1.81
39831176--39831215	17	2.4	17	83	4	55	77	0	22	0	0.77
39833347--39833522	28	6.3	28	85	0	244	31	22	20	25	1.98
39833885--39834244	27	13.3	27	83	7	340	20	17	22	39	1.93
39833885--39834244	81	4.4	81	85	3	415	20	17	22	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39836807--39836858	27	1.9	27	84	7	70	7	21	5	65	1.40
39841007--39841673	27	24.8	27	85	3	828	19	18	21	41	1.91
39851089--39851161	5	14.6	5	79	16	71	56	1	0	42	1.08
39851088--39851156	26	2.5	28	79	18	81	55	0	0	44	0.99
39853440--39853488	26	2.0	22	85	14	62	36	14	10	38	1.80
39853764--39853790	14	1.9	14	100	0	54	37	11	0	51	1.37
39857057--39857302	50	4.9	50	76	8	212	31	27	16	24	1.97
39857057--39857298	101	2.4	100	83	4	290	31	26	16	24	1.97
39860106--39860397	75	3.9	75	73	6	234	30	19	19	30	1.96
39860106--39860397	25	11.6	25	75	5	198	30	19	19	30	1.96
39860106--39860399	50	5.9	49	75	6	236	31	19	19	30	1.96
39861466--39861530	27	2.4	27	82	7	80	40	23	20	16	1.92
39861689--39861791	27	3.8	27	86	0	152	26	15	20	37	1.92
39875726--39875949	39	5.6	39	82	6	222	25	20	27	26	1.99
39875726--39875921	39	4.9	40	85	7	224	26	20	27	26	1.99
39875779--39875982	79	2.6	79	79	6	184	25	19	27	26	1.99
39877298--39877500	32	6.3	32	71	6	144	37	23	19	19	1.94
39877298--39877500	64	3.2	63	71	9	169	37	23	19	19	1.94
39877548--39877611	27	2.4	27	84	7	78	29	21	28	20	1.98
39877679--39877733	24	2.3	24	87	6	76	47	27	7	18	1.74
39877802--39877921	26	4.5	27	81	4	145	17	20	23	38	1.93
39877798--39877921	53	2.3	53	91	0	194	18	20	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39877900--39877974	27	2.8	27	85	0	96	24	21	16	38	1.92
39878918--39878977	30	2.0	30	87	6	86	46	11	8	33	1.70
39886492--39886517	12	2.2	12	100	0	52	69	0	0	30	0.89
39901484--39901516	16	2.1	16	88	11	50	48	0	39	12	1.40
39908323--39908395	21	3.5	21	69	9	51	16	35	23	24	1.95
39908750--39908778	15	1.9	15	100	0	58	31	0	13	55	1.39
39910061--39910256	101	1.9	101	90	2	313	30	13	26	30	1.94
39910061--39910239	33	5.3	34	71	9	98	30	13	25	30	1.94
39910194--39910305	33	3.4	32	75	6	89	33	16	25	25	1.96
39910074--39910316	101	2.4	101	84	5	298	30	14	26	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208