genome.fa.s18.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  161  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52271009--52271040	13	2.5	13	95	5	57	50	6	18	25	1.70
52273157--52273224	16	4.2	16	96	0	127	25	1	35	38	1.65
52273460--52273494	18	2.0	17	88	5	52	54	0	0	45	0.99
52273347--52273663	157	2.0	157	95	0	562	44	2	4	47	1.38
52273597--52273638	15	2.7	16	82	14	52	52	2	0	45	1.13
52273606--52273647	15	2.9	15	82	10	52	52	0	0	47	1.00
52277342--52277426	35	2.4	35	79	13	93	35	16	23	24	1.95
52278957--52279013	25	2.2	25	90	3	87	29	1	8	59	1.38
52281527--52281572	22	2.0	24	91	8	78	50	0	0	50	1.00
52282311--52282346	16	2.2	16	100	0	72	25	0	36	38	1.56
52282558--52282612	25	2.2	25	84	9	69	52	1	0	45	1.11
52282743--52282903	47	3.6	46	69	18	140	48	3	3	45	1.34
52295757--52295799	19	2.2	20	84	12	63	32	18	0	48	1.48
52295986--52296177	45	4.3	44	82	5	233	41	17	18	22	1.90
52297832--52298049	64	3.2	67	69	15	160	39	3	16	40	1.64
52298263--52298354	41	2.2	41	90	0	139	27	20	23	28	1.99
52299051--52299085	12	3.0	12	91	4	54	40	0	0	60	0.97
52300573--52300618	24	2.1	24	84	15	64	17	28	0	54	1.43
52303236--52303320	25	3.5	25	90	6	138	2	25	23	48	1.63
52303247--52303333	19	4.1	19	73	25	75	1	25	21	51	1.55
52305114--52305342	117	2.0	116	90	4	363	34	17	16	32	1.92
52309660--52309692	15	2.2	15	94	0	57	27	12	30	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52312529--52312614	9	9.4	9	77	7	75	41	26	6	24	1.80
52319683--52319903	110	2.0	110	96	0	406	33	19	12	34	1.89
52327232--52327294	32	2.0	32	90	6	101	26	41	6	25	1.79
52336234--52336346	56	2.0	56	98	0	217	30	26	17	24	1.97
52339418--52339444	8	3.4	8	100	0	54	51	11	0	37	1.37
52342639--52342674	18	1.9	19	88	5	56	25	2	8	63	1.36
52347151--52347184	13	2.5	14	85	9	52	23	2	14	58	1.50
52347155--52347185	13	2.4	13	94	0	53	25	3	12	58	1.50
52347783--52347835	24	2.3	22	87	6	70	41	9	0	49	1.35
52347796--52347844	24	2.0	24	84	0	62	46	10	0	42	1.37
52347823--52347857	14	2.6	13	86	8	52	54	0	0	45	0.99
52348178--52348231	26	2.1	26	92	0	90	35	12	11	40	1.79
52349919--52349987	35	1.9	36	97	2	131	26	2	18	52	1.60
52350620--52350770	75	2.0	75	100	0	302	40	13	22	23	1.89
52351005--52351148	72	2.0	72	97	0	270	26	8	21	43	1.80
52351315--52351386	12	6.2	12	68	12	51	55	1	4	38	1.28
52351398--52351482	32	2.6	33	79	5	102	44	17	11	25	1.83
52351463--52351529	34	1.9	35	90	3	109	46	10	8	34	1.70
52354789--52355037	39	6.4	39	78	6	254	27	24	18	28	1.98
52354735--52355037	78	3.8	77	81	7	324	27	24	19	29	1.98
52362905--52362992	42	2.1	42	82	6	106	40	19	19	20	1.91
52378773--52378857	35	2.4	35	82	5	100	34	16	24	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52383585--52384084	82	6.1	82	92	0	786	23	20	24	31	1.98
52384129--52384768	134	4.8	133	85	4	885	28	23	19	28	1.98
52384424--52384518	44	2.2	44	84	3	120	27	21	21	30	1.98
52384129--52384768	264	2.4	269	86	3	873	28	23	19	28	1.98
52384701--52385151	44	10.2	45	74	4	346	29	26	15	28	1.96
52384701--52385118	88	4.7	88	83	2	446	29	26	15	28	1.96
52384699--52385093	175	2.2	178	83	4	491	30	26	15	27	1.96
52384912--52385152	132	1.8	132	92	0	410	29	25	15	29	1.96
52387989--52388157	62	2.8	62	91	4	258	33	5	20	40	1.75
52395385--52395417	15	2.2	15	94	0	57	27	12	30	30	1.92
52401013--52401054	19	2.2	19	91	0	66	14	2	2	80	0.90
52401402--52401499	7	13.4	7	75	12	63	38	40	1	19	1.58
52401403--52401499	21	4.4	21	73	16	72	38	41	1	19	1.59
52402021--52402174	41	3.8	41	82	3	195	30	28	20	20	1.98
52402021--52402174	81	1.9	82	84	6	206	30	28	20	20	1.98
52403384--52403468	37	2.3	37	95	2	152	35	7	34	23	1.82
52404769--52404806	3	12.7	3	100	0	76	34	0	0	65	0.93
52425517--52425657	50	2.8	50	86	2	194	26	21	24	27	1.99
52425729--52426008	50	5.6	50	70	6	165	31	18	22	26	1.98
52425735--52426041	99	3.1	100	78	4	318	31	19	21	27	1.97
52426052--52426353	44	7.1	42	70	15	194	30	19	21	28	1.97
52426038--52426354	126	2.5	127	87	4	451	31	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52427905--52427951	25	1.9	24	82	4	58	31	10	6	51	1.62
52433786--52433820	18	2.0	18	88	5	54	42	17	11	28	1.83
52435682--52435724	21	2.0	20	86	8	59	44	6	9	39	1.64
52441511--52441536	3	8.7	3	100	0	52	30	34	0	34	1.58
52444744--52444816	39	1.9	37	86	8	103	30	10	20	38	1.87
52452908--52452932	7	3.6	7	100	0	50	28	0	16	56	1.41
52454442--52454538	50	2.0	48	82	11	119	63	4	3	28	1.27
52455036--52455077	21	2.0	21	86	4	59	64	2	2	30	1.19
52457979--52458023	18	2.5	18	88	0	72	33	13	11	42	1.79
52458447--52458618	72	2.4	72	83	4	233	27	6	13	52	1.64
52458456--52458642	72	2.6	72	83	4	191	26	5	13	54	1.61
52459988--52460019	15	2.1	15	94	0	55	34	15	34	15	1.90
52459985--52460030	18	2.6	18	96	0	83	34	13	32	19	1.90
52459984--52460042	21	2.8	21	84	0	73	32	11	33	22	1.90
52464918--52465103	40	4.7	40	87	5	234	26	28	22	23	1.99
52464885--52465103	80	2.8	81	81	8	245	26	27	21	24	1.99
52472885--52473070	40	4.7	40	85	5	207	27	27	20	23	1.99
52474986--52475081	40	2.3	40	84	7	113	26	30	26	17	1.97
52475009--52475086	40	2.0	40	89	0	120	24	29	25	20	1.99
52475013--52475102	40	2.2	40	82	3	110	25	27	24	22	2.00
52475318--52475883	124	4.5	124	86	3	672	31	16	21	30	1.95
52478973--52479027	21	2.7	21	80	2	67	29	5	25	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52478965--52479057	20	4.5	21	78	4	100	24	3	25	46	1.68
52481373--52481596	90	2.5	90	92	3	378	34	9	26	29	1.88
52481369--52481596	46	5.0	46	91	2	381	34	9	26	29	1.88
52481939--52482332	22	18.5	22	78	8	338	26	0	30	42	1.59
52481949--52482332	43	9.0	42	78	10	365	26	0	30	42	1.58
52495231--52495391	21	7.6	21	82	3	198	25	1	28	44	1.65
52495232--52495397	85	2.0	85	86	2	235	25	1	28	43	1.65
52495231--52495391	43	3.8	43	86	1	218	25	1	28	44	1.65
52497846--52498076	46	5.0	46	94	0	399	34	9	26	29	1.88
52498429--52498827	22	18.5	22	81	5	415	25	0	30	43	1.59
52498431--52498827	44	9.2	43	82	7	466	25	0	30	43	1.59
52499345--52499379	18	1.9	18	88	0	52	48	8	22	20	1.76
52500030--52500055	7	3.7	7	100	0	52	57	15	0	26	1.38
52500224--52500261	20	1.9	20	84	10	51	55	7	2	34	1.43
52501199--52501298	51	2.0	51	88	4	148	44	4	26	26	1.72
52501276--52501333	11	5.2	11	87	2	80	43	1	32	22	1.64
52501279--52501333	22	2.4	23	90	6	94	43	1	30	23	1.64
52501520--52501621	40	2.5	42	82	3	118	21	30	26	21	1.98
52506914--52506954	21	2.0	21	90	0	64	43	14	4	36	1.67
52507668--52507719	27	1.9	27	84	7	70	48	0	0	51	1.00
52512141--52512188	19	2.6	18	81	12	53	54	4	0	41	1.20
52512195--52512234	10	3.8	10	83	9	53	67	2	2	27	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52512192--52512246	20	2.9	18	74	25	51	65	3	1	29	1.20
52521821--52521879	29	2.0	29	100	0	118	27	23	3	45	1.68
52521960--52522095	66	2.1	65	97	1	254	27	14	13	43	1.84
52522496--52523610	164	6.9	163	77	12	944	29	12	9	48	1.73
52528250--52528317	17	4.0	17	72	0	64	22	30	19	27	1.97
52528409--52528461	13	3.9	13	76	9	52	24	32	20	22	1.98
52528403--52528462	28	2.1	28	93	0	102	26	31	18	23	1.97
52528396--52528448	15	3.7	15	77	10	56	28	30	18	22	1.98
52537731--52537783	13	3.9	13	78	9	61	22	18	33	24	1.97
52537730--52537789	28	2.1	28	96	0	111	23	16	33	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208