genome.fa.s18.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  148  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48162268--48162309	20	2.0	21	90	4	68	23	28	16	30	1.96
48177048--48177072	13	1.9	13	100	0	50	36	0	16	48	1.46
48181507--48181564	28	2.1	28	100	0	116	60	22	13	3	1.49
48183113--48183152	6	6.7	6	97	0	71	0	17	12	70	1.18
48183819--48183874	29	2.0	29	83	16	73	62	5	3	28	1.34
48184396--48184422	6	4.5	6	100	0	54	33	0	0	66	0.92
48184850--48184929	30	2.7	30	77	12	76	45	1	2	51	1.22
48185357--48185400	23	1.9	23	90	0	70	47	0	6	45	1.29
48187518--48187595	39	2.0	39	97	0	147	47	20	19	12	1.82
48192131--48192255	35	3.6	34	83	4	160	35	32	12	19	1.89
48194547--48194593	25	1.9	24	86	4	67	63	6	0	29	1.19
48194606--48194661	11	5.1	11	76	8	51	42	0	35	21	1.53
48199173--48199414	115	2.1	115	90	1	387	45	6	9	39	1.61
48199419--48200668	23	55.8	23	75	11	938	27	0	25	46	1.58
48199419--48200668	44	27.9	45	81	7	989	27	0	25	46	1.58
48199409--48200668	67	19.1	67	81	9	1137	27	0	25	46	1.58
48200699--48200734	9	4.2	9	93	6	58	61	8	0	30	1.26
48200742--48200855	25	4.8	25	72	14	114	46	12	0	41	1.41
48200731--48200865	70	1.9	70	96	0	252	48	11	0	39	1.45
48201343--48201391	23	2.1	23	82	14	57	46	12	12	28	1.77
48201361--48201524	71	2.3	72	87	4	233	40	18	13	27	1.88
48201395--48201813	71	6.0	71	69	17	223	41	20	12	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48201433--48201863	93	4.6	94	94	2	726	41	19	12	25	1.87
48201423--48201908	23	20.8	22	66	18	119	41	19	13	25	1.88
48201433--48201885	46	9.6	45	70	11	250	41	19	13	25	1.88
48202638--48202733	28	3.4	29	87	7	135	32	27	11	29	1.91
48209120--48209548	23	18.4	22	66	15	184	42	19	12	24	1.86
48209016--48209548	187	2.8	188	93	2	897	41	19	12	26	1.87
48209016--48209596	46	12.3	45	73	9	401	41	18	13	27	1.87
48209016--48209548	94	5.6	94	95	1	897	41	19	12	26	1.87
48210343--48210446	28	3.7	29	83	6	133	33	25	10	29	1.90
48212566--48212590	7	3.6	7	100	0	50	60	12	0	28	1.32
48212761--48212798	20	1.9	20	84	10	51	55	7	2	34	1.43
48213694--48213734	12	3.5	12	83	3	57	68	0	0	31	0.90
48213809--48213835	11	2.5	11	100	0	54	55	0	22	22	1.44
48215798--48215837	9	4.4	9	87	12	64	60	0	0	40	0.97
48215787--48215846	10	6.2	10	79	13	63	63	0	0	36	0.95
48215797--48215846	18	2.6	19	84	9	75	60	0	0	40	0.97
48216104--48216145	23	1.9	21	90	9	66	42	4	0	52	1.22
48216489--48216612	61	2.0	61	89	3	187	37	9	9	42	1.71
48216828--48216889	8	7.8	8	73	20	58	69	0	1	29	0.98
48216812--48216878	18	3.8	18	72	18	61	64	1	1	32	1.12
48216828--48216909	43	1.9	41	83	11	103	65	1	1	31	1.08
48216860--48216889	14	2.1	15	93	6	53	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48222149--48222175	12	2.2	12	100	0	54	40	11	25	22	1.87
48223857--48223978	59	2.1	59	96	0	226	38	20	13	27	1.90
48231993--48232026	15	2.2	16	89	5	52	44	17	2	35	1.64
48234038--48234094	28	2.0	28	100	0	114	28	10	21	40	1.86
48240018--48240072	26	2.1	26	96	0	101	20	10	21	47	1.80
48248483--48248545	32	2.0	32	83	0	81	30	17	19	33	1.95
48252308--48252350	13	3.0	15	73	13	54	51	18	4	25	1.66
48252832--48252896	32	2.2	30	86	13	91	56	10	9	23	1.61
48253087--48253168	23	3.5	24	68	12	62	41	15	15	26	1.88
48253082--48253266	99	1.9	99	93	0	316	44	15	14	25	1.84
48253082--48253266	48	3.8	48	85	7	255	44	15	14	25	1.84
48253842--48253927	42	2.0	43	84	2	111	36	24	12	26	1.92
48260951--48261193	48	5.0	47	84	6	247	45	15	12	26	1.81
48261090--48261164	23	2.9	27	65	15	68	48	13	12	26	1.77
48260966--48261193	98	2.4	97	85	5	320	46	15	12	25	1.81
48261739--48261856	42	2.8	41	79	5	119	33	23	14	28	1.94
48261773--48261858	42	2.0	43	86	2	120	34	25	13	25	1.93
48273252--48273288	17	2.2	17	100	0	74	16	16	21	45	1.84
48275732--48276113	40	9.6	40	88	2	511	23	19	28	28	1.98
48275732--48276113	159	2.4	159	94	0	656	23	19	28	28	1.98
48275732--48276115	119	3.2	119	85	3	513	23	19	28	28	1.98
48283778--48284159	40	9.6	40	88	2	511	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48283778--48284159	159	2.4	159	94	0	656	23	19	28	28	1.98
48283778--48284161	119	3.2	119	85	3	513	23	19	28	28	1.98
48285807--48285958	27	5.7	26	76	7	110	40	19	19	21	1.92
48286072--48286152	26	3.1	26	89	0	126	20	19	22	37	1.95
48300030--48300145	29	4.0	29	85	3	126	38	14	25	21	1.91
48300028--48300145	58	2.0	59	82	8	143	38	14	25	22	1.92
48306142--48306229	29	3.0	30	83	3	115	36	12	30	20	1.90
48306147--48306239	30	3.1	30	84	3	125	34	13	27	23	1.93
48309877--48309923	22	2.1	22	84	0	58	46	17	17	19	1.84
48309915--48310111	32	6.3	32	78	8	181	39	19	19	21	1.93
48309965--48310050	29	2.9	28	84	8	75	36	20	20	22	1.96
48309928--48310111	61	3.0	60	81	5	206	39	19	19	21	1.93
48310117--48310170	26	2.1	26	85	0	72	37	24	20	18	1.94
48310162--48310217	27	2.1	27	83	12	71	32	21	25	21	1.98
48310285--48310343	24	2.5	24	88	0	82	49	20	6	23	1.73
48310298--48310346	24	2.0	24	96	0	89	48	20	6	24	1.72
48310389--48310570	27	6.7	27	89	1	249	22	23	21	32	1.98
48318972--48319169	50	3.8	50	79	4	189	28	21	27	22	1.99
48337854--48337945	42	2.2	44	77	15	104	41	19	11	27	1.86
48343095--48343208	42	2.7	43	77	13	112	42	20	13	24	1.87
48348418--48348473	27	2.1	27	82	0	67	16	30	17	35	1.92
48349889--48349996	42	2.6	41	76	10	112	24	15	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48352281--48352341	30	2.0	30	96	0	113	18	13	11	57	1.65
48359082--48359321	46	5.3	46	85	11	225	36	14	21	27	1.93
48359082--48359284	46	4.3	48	88	7	265	35	14	21	28	1.92
48359016--48359284	98	2.7	98	93	0	457	34	14	22	28	1.93
48359248--48359393	37	4.0	37	93	1	251	36	16	22	24	1.94
48362636--48362679	23	1.9	22	82	17	54	36	25	0	38	1.56
48362823--48363008	51	3.7	49	75	5	174	31	26	17	25	1.97
48364960--48364986	11	2.5	11	100	0	54	92	0	7	0	0.38
48367304--48367336	17	1.9	17	93	0	57	42	21	6	30	1.77
48369100--48369174	33	2.3	33	84	8	100	62	4	0	33	1.14
48372190--48372289	35	2.9	35	86	0	137	28	17	30	25	1.97
48374503--48374532	9	3.4	9	95	4	53	23	0	10	66	1.21
48375021--48375065	10	4.4	10	77	5	54	75	6	13	4	1.15
48375025--48375065	15	2.7	15	80	3	55	73	7	14	4	1.22
48375025--48375068	16	2.8	17	80	13	58	70	9	15	4	1.30
48375974--48376065	41	2.4	39	80	7	98	25	19	26	29	1.99
48375974--48376082	38	2.8	39	75	9	98	23	20	24	31	1.98
48381393--48382064	334	2.0	334	99	0	1335	29	25	12	33	1.92
48382235--48382307	27	2.7	27	82	0	74	38	20	10	30	1.87
48386641--48386787	43	3.5	43	78	7	165	30	17	25	26	1.97
48394910--48394935	3	8.7	3	100	0	52	0	0	30	69	0.89
48401508--48401840	27	12.4	27	85	9	407	36	18	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48401508--48401840	54	6.2	54	86	7	455	36	18	20	24	1.95
48401507--48401840	161	2.1	161	89	3	512	36	17	20	24	1.94
48401998--48402050	26	2.0	26	96	0	97	15	16	26	41	1.88
48403926--48404113	45	4.2	45	84	1	227	23	15	26	35	1.94
48408100--48408137	20	1.9	20	88	0	58	26	21	31	21	1.98
48408387--48408655	27	10.0	27	84	3	292	40	22	16	20	1.91
48418736--48418790	26	2.1	26	100	0	110	23	3	18	54	1.59
48421039--48421329	42	6.9	41	83	6	343	34	19	19	25	1.96
48421039--48421329	127	2.3	127	86	5	392	34	19	19	25	1.96
48421039--48421332	85	3.5	82	82	7	374	34	19	19	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208