genome.fa.s18.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  107  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35425751--35425777	3	9.0	3	100	0	54	66	0	0	33	0.92
35427322--35427362	14	2.9	15	85	7	50	53	2	0	43	1.13
35427574--35427620	13	3.3	14	82	11	60	46	2	2	48	1.25
35427574--35427613	20	2.0	21	90	5	64	47	2	0	50	1.14
35427942--35427986	16	2.9	16	83	9	58	46	0	2	51	1.13
35428222--35428258	19	1.9	19	88	0	56	40	5	2	51	1.39
35429238--35429285	25	1.9	25	86	0	69	33	18	16	31	1.94
35434384--35434419	18	2.0	18	88	0	54	44	2	19	33	1.65
35436787--35436901	44	2.6	44	81	2	133	32	20	18	29	1.96
35436828--35437046	96	2.3	96	79	4	237	31	21	15	31	1.94
35436957--35437156	110	1.8	110	85	2	285	31	23	14	32	1.93
35437086--35437972	51	17.6	51	71	14	520	30	19	15	34	1.93
35437067--35437255	96	2.0	96	83	0	243	29	20	16	33	1.94
35436861--35437252	206	1.9	206	84	0	532	30	22	14	32	1.94
35437118--35437941	206	4.0	201	81	4	825	29	20	14	34	1.93
35436957--35437509	255	2.2	257	86	1	761	30	21	15	33	1.94
35437328--35437507	96	1.9	94	88	2	270	31	16	16	35	1.91
35437419--35437635	110	2.0	111	88	0	328	29	22	13	34	1.93
35437527--35437972	95	4.5	96	73	11	315	30	19	15	34	1.93
35436880--35437823	461	2.0	458	80	5	1067	30	20	14	34	1.93
35437796--35437963	45	3.6	45	76	7	174	30	22	16	30	1.95
35437738--35437970	95	2.4	96	89	0	360	31	20	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35442578--35442728	25	6.2	25	68	17	93	15	22	23	38	1.93
35445006--35445478	235	2.0	235	98	0	919	23	20	17	37	1.93
35447812--35447875	4	16.8	4	76	12	55	67	0	4	28	1.11
35449307--35449348	22	1.9	23	85	9	61	47	7	2	42	1.43
35452894--35453243	175	2.0	175	98	0	682	33	13	9	43	1.76
35453224--35453283	30	2.0	30	93	0	102	38	11	18	31	1.87
35460754--35460808	9	5.9	9	77	8	56	78	0	5	16	0.93
35460754--35460809	28	2.0	28	82	6	69	76	0	5	17	0.96
35460755--35460808	19	2.9	18	75	17	56	77	0	5	16	0.94
35469269--35469303	17	2.1	17	88	0	52	34	14	8	42	1.76
35470340--35470725	208	1.9	206	82	6	485	27	16	13	43	1.85
35473707--35473763	10	5.8	10	75	4	53	35	1	0	63	1.05
35473702--35473762	29	2.1	29	87	0	86	32	3	0	63	1.10
35479199--35479234	12	2.9	12	88	8	54	22	0	0	77	0.76
35480450--35480510	26	2.3	26	80	5	70	29	6	3	60	1.38
35481917--35482214	123	2.4	124	83	4	368	29	19	14	36	1.92
35484841--35484880	9	4.4	9	100	0	80	70	10	0	20	1.16
35484779--35484906	18	7.2	17	75	14	73	64	3	3	28	1.24
35484826--35484899	27	2.8	26	82	13	80	67	5	2	24	1.25
35485141--35485179	19	2.1	19	85	9	53	28	2	7	61	1.37
35485153--35485224	19	3.7	19	73	14	58	33	2	2	61	1.25
35485171--35485235	20	3.3	20	71	16	55	32	4	1	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35485405--35485582	97	1.8	99	84	7	247	38	12	15	34	1.85
35488152--35488187	19	1.9	19	88	5	56	55	0	5	38	1.23
35492428--35492470	12	3.4	12	78	12	50	67	0	32	0	0.91
35492420--35492470	26	2.0	26	88	7	77	66	0	33	0	0.92
35496966--35497080	58	2.0	58	94	0	203	29	17	24	28	1.97
35507885--35507914	6	5.0	6	91	0	51	63	0	20	16	1.31
35507885--35507918	12	2.8	12	90	0	59	64	0	20	14	1.28
35508659--35508686	9	3.1	9	100	0	56	67	10	0	21	1.20
35509085--35509124	21	1.9	21	89	0	62	57	0	12	30	1.36
35509132--35509172	21	2.0	21	85	0	55	41	9	12	36	1.76
35511476--35511541	8	8.4	8	77	8	64	51	12	10	25	1.71
35515541--35515594	15	3.3	15	74	18	54	42	0	3	53	1.18
35516735--35516778	16	2.7	16	89	10	63	2	31	0	65	1.05
35517601--35517676	38	2.0	38	84	0	98	31	10	19	38	1.86
35517737--35518011	43	6.5	43	80	4	258	28	21	16	34	1.94
35524102--35524141	11	3.8	11	80	12	57	0	25	0	75	0.81
35524101--35524139	20	2.0	20	94	0	69	0	23	0	76	0.78
35525389--35525425	19	2.0	19	85	15	51	45	2	2	48	1.30
35525989--35526047	11	5.3	11	83	2	73	22	30	1	45	1.62
35525989--35526063	33	2.2	34	81	9	91	25	26	1	46	1.61
35525989--35526063	22	3.4	22	80	15	91	25	26	1	46	1.61
35527206--35527231	7	3.7	7	100	0	52	26	0	15	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35528437--35529381	22	42.9	22	78	8	762	42	31	0	24	1.61
35528466--35529380	43	20.9	43	82	6	959	42	31	0	24	1.61
35528437--35529380	65	14.3	66	81	6	1020	42	31	0	24	1.61
35531242--35531294	6	8.5	6	77	8	52	13	5	5	75	1.16
35531320--35531365	3	15.3	3	100	0	92	32	0	0	67	0.91
35532417--35532447	14	2.3	14	94	5	55	70	12	16	0	1.16
35533568--35533626	25	2.5	25	84	13	72	35	5	1	57	1.31
35533674--35533700	4	6.8	4	100	0	54	51	22	0	25	1.48
35539225--35539332	33	3.4	33	66	21	93	41	8	34	15	1.77
35539209--35539334	63	2.0	63	96	0	234	40	7	36	15	1.76
35539221--35539320	30	3.3	29	65	22	78	42	8	35	15	1.76
35542197--35542240	19	2.5	17	85	7	52	70	6	0	22	1.11
35542623--35542675	24	2.2	24	86	0	70	39	9	16	33	1.81
35544415--35544468	25	2.2	25	82	0	63	55	9	1	33	1.42
35544432--35544488	25	2.2	25	87	3	78	49	8	0	42	1.34
35547829--35547894	30	2.2	30	86	0	87	30	21	21	27	1.98
35549531--35549573	3	14.3	3	100	0	86	32	0	0	67	0.91
35557395--35557426	16	2.0	16	100	0	64	31	0	18	50	1.48
35557905--35557930	12	2.2	12	100	0	52	42	23	11	23	1.86
35558453--35558491	21	1.9	21	94	5	71	38	10	2	48	1.51
35561335--35561378	24	1.9	24	90	9	74	36	0	2	61	1.09
35561566--35561607	16	2.6	16	92	0	66	42	7	2	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35561581--35561642	23	2.7	23	82	2	72	48	1	1	48	1.21
35570227--35570278	21	2.5	21	73	14	54	38	0	17	44	1.49
35570594--35570771	25	7.2	25	67	17	79	20	24	18	36	1.95
35570593--35570689	50	2.0	50	84	8	128	20	24	17	37	1.94
35570952--35571027	26	2.9	25	83	11	91	17	23	21	38	1.93
35570962--35571028	26	2.5	26	87	2	98	17	20	20	40	1.92
35575082--35575143	26	2.4	26	83	5	81	37	11	12	38	1.80
35575279--35575305	6	4.5	6	100	0	54	48	14	18	18	1.82
35581809--35581847	19	2.1	19	95	0	69	48	12	10	28	1.74
35581764--35581866	54	1.9	54	89	0	161	42	14	9	33	1.78
35585539--35585599	25	2.4	25	78	10	63	37	3	1	57	1.25
35603576--35603634	31	1.9	31	89	0	91	50	8	18	22	1.73
35604095--35604171	39	2.0	39	82	10	95	53	2	2	41	1.28
35608559--35608614	26	2.2	24	81	15	60	30	8	3	57	1.47
35608792--35608859	18	3.8	18	71	19	52	29	1	4	64	1.21
35612846--35612888	18	2.3	19	88	4	61	55	2	18	23	1.54
35612846--35612888	12	3.5	12	81	12	52	55	2	18	23	1.54
35620536--35620568	13	2.5	13	100	0	66	24	0	21	54	1.45
35625403--35625494	21	4.4	21	70	1	60	44	17	20	17	1.87
35625566--35625637	24	3.0	24	91	0	117	20	27	5	45	1.73
35627621--35627655	18	1.9	18	100	0	70	48	5	28	17	1.69
35638209--35638242	18	1.9	17	88	5	50	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35638859--35638938	36	2.2	36	84	4	106	46	0	22	31	1.52
35638875--35638936	18	3.4	18	72	16	65	41	0	22	35	1.54
35639119--35639194	21	3.5	21	83	5	89	22	23	21	32	1.98
35639155--35639202	21	2.3	21	92	0	78	14	25	27	33	1.94
35644248--35644287	16	2.5	16	88	11	64	25	25	0	50	1.50
35644645--35644762	40	3.0	40	84	1	148	32	23	22	21	1.98
35644810--35645006	41	4.8	41	76	9	113	16	22	27	33	1.95
35644840--35644966	41	3.1	40	80	7	132	14	22	27	34	1.94
35645386--35645432	20	2.3	20	96	3	85	34	4	6	55	1.45
35645714--35645764	27	1.9	26	88	4	75	41	0	11	47	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208