genome.fa.s18.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  155  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394342--50394520	20	9.0	20	76	3	155	16	21	15	45	1.85
50394350--50394506	40	4.0	40	76	4	174	17	22	14	45	1.84
50394342--50394520	80	2.3	79	89	1	259	16	21	15	45	1.85
50396926--50396957	16	1.9	17	93	6	57	75	0	15	9	1.05
50397171--50397318	68	2.2	68	84	6	183	33	14	20	32	1.92
50398262--50398308	16	2.9	16	75	9	51	34	14	12	38	1.85
50402146--50402233	45	2.0	45	93	0	149	50	4	17	28	1.65
50402765--50402789	13	1.9	13	100	0	50	40	0	8	52	1.31
50407959--50407987	10	2.7	11	89	10	51	72	0	6	20	1.07
50409898--50409948	22	2.3	23	80	16	63	43	3	5	47	1.46
50410182--50410218	19	1.9	19	88	0	56	37	29	5	27	1.79
50411831--50411932	22	4.4	23	72	11	75	40	14	22	22	1.90
50413632--50413668	20	1.9	19	89	10	58	45	0	27	27	1.54
50417286--50417376	44	2.1	44	83	4	112	47	10	9	31	1.72
50421443--50421509	20	3.3	20	70	4	62	31	19	31	17	1.95
50421424--50421530	41	2.6	41	89	0	151	30	18	29	20	1.97
50421424--50421490	21	3.2	21	70	4	64	29	16	31	22	1.96
50421457--50421531	21	3.7	20	68	18	55	33	18	28	20	1.96
50425079--50425121	23	1.9	22	90	4	68	58	2	2	37	1.24
50425348--50425385	18	2.1	19	90	5	60	34	0	5	60	1.19
50427823--50427847	13	1.9	13	100	0	50	32	0	0	68	0.90
50428012--50428038	14	1.9	14	100	0	54	51	7	18	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50437653--50437789	51	2.7	51	79	0	166	40	6	13	40	1.70
50440452--50440588	51	2.7	51	79	0	166	40	6	13	40	1.70
50442939--50443060	61	2.0	61	98	0	235	37	11	18	31	1.87
50451798--50451840	18	2.4	18	88	3	61	16	18	11	53	1.72
50455258--50455307	23	2.2	23	85	0	64	8	12	20	60	1.57
50455265--50455342	26	3.1	26	83	5	90	7	8	20	62	1.49
50455265--50455345	23	3.4	23	78	9	81	7	8	19	64	1.46
50455348--50455400	24	2.2	25	82	3	63	7	22	18	50	1.72
50461941--50462000	30	2.0	30	96	0	111	56	15	3	25	1.54
50464978--50465026	18	2.7	19	78	9	57	40	16	0	42	1.48
50475233--50475314	40	2.0	40	92	0	137	36	18	15	29	1.92
50476875--50476942	32	2.1	32	91	0	109	17	11	25	45	1.82
50476876--50476972	32	3.2	30	81	10	99	17	13	25	43	1.86
50478582--50478616	17	2.1	17	89	10	54	25	11	34	28	1.91
50490073--50490146	21	3.6	19	78	10	67	47	1	0	51	1.09
50490359--50490420	13	4.8	13	81	0	79	38	24	6	30	1.80
50490617--50490652	15	2.4	15	85	0	54	38	19	0	41	1.52
50491087--50491136	19	2.7	18	84	9	64	68	6	4	22	1.29
50491720--50491783	22	2.9	22	88	0	83	46	14	15	23	1.82
50496827--50496880	23	2.3	24	81	9	76	42	14	20	22	1.88
50498942--50499203	136	1.9	136	87	0	380	36	15	22	25	1.94
50498944--50499209	68	3.9	68	87	0	343	35	16	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50500473--50500511	20	2.0	20	85	10	53	43	23	0	33	1.54
50506846--50506897	14	3.6	15	84	7	72	61	3	7	26	1.41
50507022--50507070	19	2.6	18	87	6	62	40	10	0	48	1.37
50514685--50514948	136	1.9	136	89	3	406	34	12	20	32	1.90
50515269--50516429	581	2.0	582	94	0	2040	32	15	21	29	1.94
50517907--50517940	3	11.3	3	93	0	59	61	0	0	38	0.96
50522537--50522561	6	4.2	6	100	0	50	32	36	32	0	1.58
50523075--50523153	27	2.9	27	92	0	131	22	27	26	22	1.99
50527706--50527796	33	2.7	33	79	16	96	45	3	2	49	1.30
50539800--50539828	15	1.9	15	100	0	58	0	20	17	62	1.33
50540425--50540479	28	1.9	28	81	3	65	54	7	1	36	1.39
50545200--50545233	16	2.1	16	88	0	50	2	17	0	79	0.86
50550819--50550850	15	2.1	15	94	0	55	46	6	15	31	1.71
50555993--50556030	20	2.0	20	94	5	69	50	5	10	34	1.59
50560971--50561011	17	2.3	19	87	8	59	43	0	0	56	0.99
50561285--50561340	21	2.7	21	94	0	94	60	7	19	12	1.55
50567595--50567638	5	8.8	5	90	9	72	81	2	0	15	0.78
50574155--50574199	18	2.5	18	82	7	56	40	17	4	37	1.70
50578095--50578379	76	3.8	76	82	3	342	28	17	18	36	1.93
50585353--50585407	21	2.6	21	85	0	74	30	38	7	23	1.82
50587418--50587475	27	2.1	28	81	9	66	44	10	6	37	1.65
50594687--50594726	20	1.9	22	85	10	57	50	10	7	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50598648--50598847	40	5.0	40	95	0	337	26	21	29	23	1.99
50615608--50615668	29	2.1	29	90	0	95	49	14	8	27	1.72
50616845--50616950	56	1.9	56	82	5	135	24	24	15	35	1.94
50617212--50617276	23	2.9	22	90	6	103	44	20	12	23	1.84
50617498--50617532	13	2.7	13	90	0	52	42	11	0	45	1.40
50624701--50624741	21	2.0	21	85	0	55	65	2	24	7	1.30
50624775--50624841	33	1.9	33	82	8	80	46	8	31	13	1.74
50629942--50629967	6	4.3	6	100	0	52	15	0	0	84	0.62
50641804--50641829	6	4.3	6	100	0	52	15	0	0	84	0.62
50666285--50666311	14	1.9	14	100	0	54	29	14	22	33	1.94
50668656--50668724	33	2.2	33	94	5	124	23	11	26	39	1.88
50675541--50675584	17	2.6	16	85	7	52	9	25	6	59	1.53
50675542--50675589	17	2.9	16	84	6	51	10	27	6	56	1.57
50682489--50682532	20	2.2	19	84	8	52	31	11	34	22	1.90
50685817--50685843	13	2.1	13	100	0	54	29	7	0	62	1.22
50687573--50687626	20	2.8	20	88	2	74	25	24	18	31	1.97
50697346--50697406	21	2.9	21	76	16	63	6	21	0	72	1.07
50700581--50700672	46	2.0	46	95	0	166	25	22	21	30	1.99
50701342--50701388	24	1.9	25	82	4	60	42	4	25	27	1.73
50719596--50719639	12	3.6	12	84	6	52	75	4	2	18	1.09
50719684--50719733	14	3.4	14	74	15	55	80	2	10	8	0.99
50719683--50719751	29	2.3	29	83	14	88	75	2	11	10	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50719683--50719754	30	2.4	29	80	13	85	75	2	12	9	1.16
50720605--50720636	15	2.1	16	94	5	57	71	0	21	6	1.07
50720635--50720764	42	2.8	46	82	13	169	58	3	25	13	1.49
50720677--50720746	24	3.2	24	69	23	80	65	4	21	8	1.37
50720688--50720756	18	3.5	18	72	27	68	66	4	20	8	1.36
50720671--50720758	42	2.1	42	100	0	176	63	4	22	9	1.42
50720787--50720831	21	2.3	18	85	11	54	55	0	26	17	1.42
50724613--50724782	40	4.3	40	83	1	198	24	21	29	24	1.99
50724635--50724817	79	2.3	80	80	1	199	25	21	28	24	1.99
50739534--50739767	40	5.8	40	91	0	351	25	22	29	23	1.99
50757609--50757751	50	2.7	54	74	16	136	27	20	26	25	1.99
50757665--50757792	50	2.6	49	81	6	152	29	22	25	22	1.99
50761324--50761452	67	1.9	67	91	0	213	28	31	18	21	1.97
50770928--50770981	26	2.1	25	86	3	72	57	14	7	20	1.61
50771626--50771650	3	8.3	3	100	0	50	68	0	32	0	0.90
50788426--50788454	15	2.0	15	93	6	51	27	3	20	48	1.66
50792889--50792924	15	2.4	15	90	0	54	38	25	11	25	1.88
50792987--50793034	15	3.0	15	76	11	51	27	31	6	35	1.82
50793908--50794007	51	2.0	48	90	5	155	29	6	17	48	1.70
50799373--50799457	35	2.4	35	80	3	91	16	29	22	31	1.96
50803151--50803193	23	1.9	23	95	4	79	37	0	0	62	0.95
50803266--50803293	9	3.1	9	100	0	56	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50803236--50803454	77	3.1	68	84	12	307	47	8	4	40	1.54
50803334--50803370	9	4.1	9	100	0	74	56	10	0	32	1.34
50803266--50803436	77	2.2	77	95	2	310	50	8	2	38	1.49
50803443--50803486	18	2.6	16	80	13	52	40	6	2	50	1.42
50803446--50803483	18	2.1	18	90	0	58	36	7	2	52	1.45
50817212--50817237	8	3.2	8	100	0	52	65	0	0	34	0.93
50817572--50817675	31	3.4	30	74	10	104	45	8	1	44	1.45
50818815--50818859	17	2.8	17	86	6	58	37	0	2	60	1.09
50818815--50818863	16	3.0	16	85	5	62	38	0	2	59	1.09
50820890--50820937	20	2.5	20	89	3	71	14	14	6	64	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208