genome.fa.s18.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  169  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54251738--54251795	21	2.7	22	74	12	59	43	29	0	27	1.55
54270803--54270849	17	2.9	17	84	6	53	53	2	2	42	1.25
54271000--54271051	3	17.0	3	88	4	68	59	0	5	34	1.21
54271000--54271050	15	3.3	15	88	2	75	58	0	5	35	1.22
54271000--54271051	18	2.8	18	91	2	86	59	0	5	34	1.21
54270999--54271063	18	3.6	18	85	4	78	58	4	4	32	1.39
54272629--54272980	50	7.0	50	75	8	270	22	20	25	32	1.98
54272749--54272980	100	2.3	100	94	1	412	21	19	26	31	1.98
54272965--54272995	15	2.1	15	93	0	53	29	22	9	38	1.86
54272865--54273095	115	2.0	115	93	0	399	22	19	23	34	1.97
54272765--54273195	215	2.0	215	94	0	765	21	19	25	33	1.97
54272980--54273232	100	2.5	100	96	0	452	20	20	25	33	1.97
54272980--54273230	50	5.0	49	71	7	218	21	20	25	33	1.97
54285935--54285986	3	17.0	3	88	4	68	59	0	5	34	1.21
54285935--54285985	15	3.3	15	88	2	75	58	0	5	35	1.22
54285935--54285986	18	2.8	18	91	2	86	59	0	5	34	1.21
54285934--54285998	18	3.6	18	85	4	78	58	4	4	32	1.39
54286490--54286529	21	1.9	21	100	0	80	2	32	30	35	1.71
54287715--54287774	30	2.0	31	83	9	79	41	0	38	20	1.52
54287988--54288024	9	4.1	9	92	0	65	29	10	13	45	1.77
54288077--54288107	9	3.4	9	90	0	53	38	22	12	25	1.90
54291846--54292000	44	3.5	42	77	11	136	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54291883--54292674	44	17.7	44	71	9	426	28	22	18	30	1.97
54291978--54292318	181	1.9	184	81	6	424	29	21	18	30	1.97
54291883--54292676	314	2.5	315	86	3	1059	28	22	18	30	1.97
54292749--54292862	51	2.2	51	80	0	129	28	26	14	30	1.95
54292989--54293031	21	2.0	21	86	0	59	23	32	4	39	1.75
54292995--54293037	21	2.0	21	81	0	50	25	34	4	34	1.77
54293868--54293932	28	2.4	27	89	7	87	43	13	13	29	1.83
54293878--54293933	28	2.0	28	100	0	112	42	14	14	28	1.84
54304288--54304652	44	8.3	44	81	2	401	33	17	20	28	1.95
54304679--54304741	13	4.8	13	78	7	74	33	6	23	36	1.80
54305627--54305672	14	3.3	13	80	14	56	78	10	0	10	0.97
54305627--54305673	15	3.3	15	75	19	55	78	10	0	10	0.96
54305956--54306009	22	2.3	24	87	6	76	66	11	16	5	1.40
54320630--54320712	28	3.0	28	74	0	85	30	16	15	37	1.90
54321885--54321931	17	2.7	17	78	12	51	19	10	2	68	1.30
54322047--54322093	4	11.8	4	100	0	94	51	23	0	25	1.49
54330167--54330207	21	2.0	21	90	0	64	29	21	29	19	1.98
54337113--54337160	24	2.0	25	83	4	62	52	4	6	37	1.46
54341227--54341265	20	2.0	20	100	0	78	33	15	25	25	1.95
54344957--54348526	892	4.0	893	99	0	7008	42	22	13	21	1.88
54355860--54355921	30	2.1	31	82	11	76	40	1	9	48	1.46
54357720--54357757	17	2.2	17	90	0	58	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54358785--54358817	12	2.8	12	86	4	50	30	9	9	51	1.64
54363105--54363181	19	3.9	19	75	12	66	33	11	5	49	1.62
54363151--54363224	21	3.7	20	76	8	78	32	13	8	45	1.73
54363116--54363223	40	2.7	40	82	2	117	34	12	6	46	1.68
54363152--54363211	20	3.0	20	78	11	68	31	16	6	45	1.74
54364668--54364707	17	2.3	18	83	12	57	42	0	15	42	1.46
54368896--54368957	4	15.5	4	93	0	88	43	24	6	25	1.78
54369286--54369394	49	2.2	50	82	8	134	37	13	22	25	1.92
54377711--54377851	57	2.4	58	95	1	248	24	6	22	46	1.75
54378251--54378280	12	2.6	11	90	10	51	20	0	6	73	1.05
54387642--54387705	26	2.5	26	86	0	92	37	12	14	35	1.83
54394957--54395018	30	2.1	31	82	11	76	40	1	9	48	1.46
54396807--54396857	12	4.2	12	80	14	52	80	1	17	0	0.81
54396818--54396856	17	2.2	18	90	4	62	79	0	20	0	0.73
54396807--54396857	17	2.8	18	82	14	61	80	1	17	0	0.81
54397886--54397918	12	2.8	12	86	4	50	30	9	9	51	1.64
54402213--54402289	19	3.9	19	75	12	66	33	11	5	49	1.62
54402259--54402332	21	3.7	20	76	8	78	32	13	8	45	1.73
54402224--54402331	40	2.7	40	82	2	117	34	12	6	46	1.68
54402260--54402319	20	3.0	20	78	11	68	31	16	6	45	1.74
54403776--54403815	17	2.3	18	83	12	57	42	0	15	42	1.46
54408016--54408073	4	14.5	4	92	0	80	43	24	6	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54408404--54408512	49	2.2	50	82	8	134	37	13	22	25	1.92
54416831--54416971	57	2.4	58	95	1	248	24	6	21	46	1.75
54417372--54417401	12	2.6	11	90	10	51	20	0	6	73	1.05
54421322--54421509	61	3.1	61	66	17	156	44	2	5	47	1.41
54421257--54421544	120	2.4	120	89	3	463	44	1	4	48	1.34
54421490--54421524	18	2.0	17	88	5	52	45	0	0	54	0.99
54421757--54421810	16	3.4	16	94	0	99	25	35	1	37	1.67
54422661--54422729	32	2.1	31	82	12	77	42	0	1	56	1.08
54427372--54427526	77	2.0	77	98	0	301	34	10	8	47	1.68
54427906--54428439	267	2.0	267	99	0	1059	29	7	21	41	1.80
54430396--54430446	17	2.9	17	85	5	57	15	0	5	78	0.93
54435105--54435129	13	1.9	13	100	0	50	28	8	24	40	1.83
54440321--54440350	14	2.1	14	100	0	60	46	13	0	40	1.43
54440349--54440396	21	2.2	22	78	14	55	45	10	4	39	1.58
54440357--54440395	21	1.9	21	89	5	62	38	12	5	43	1.65
54452643--54452674	10	2.8	12	81	18	50	40	15	0	43	1.47
54452707--54452736	15	1.9	16	93	6	53	40	0	0	60	0.97
54453320--54453759	109	4.1	109	92	1	688	30	17	18	33	1.94
54455155--54455201	19	2.5	19	86	6	60	27	19	8	44	1.79
54458019--54458091	10	7.7	9	77	13	67	83	0	15	1	0.71
54458019--54458091	19	3.8	18	76	16	67	83	0	15	1	0.71
54458019--54458084	20	3.2	20	81	12	80	83	0	15	1	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54458019--54458091	13	5.5	13	82	8	67	83	0	15	1	0.71
54459374--54459877	50	10.1	50	69	6	250	31	23	21	23	1.98
54459374--54459913	100	5.4	100	83	0	600	32	22	21	23	1.98
54459374--54459913	200	2.7	198	84	2	677	32	22	21	23	1.98
54459833--54459948	50	2.3	50	84	0	142	33	18	20	26	1.96
54460079--54460275	44	4.5	45	68	13	113	29	18	23	27	1.98
54460066--54460410	132	2.6	132	91	2	534	28	17	24	29	1.97
54461909--54461948	18	2.1	18	86	9	53	7	15	0	77	0.98
54462783--54462819	19	1.9	19	88	0	56	54	8	8	29	1.59
54463760--54463792	17	1.9	17	93	0	57	63	0	6	30	1.18
54465876--54465918	21	2.0	21	82	8	52	37	2	9	51	1.47
54487081--54487226	37	4.0	37	91	1	233	24	22	16	36	1.94
54487190--54487556	46	7.6	46	83	10	437	29	22	13	34	1.92
54487233--54487550	52	6.3	52	85	9	444	29	22	12	35	1.91
54487201--54487556	98	3.6	98	94	0	595	29	21	13	34	1.92
54494808--54494965	82	1.9	82	82	7	196	34	28	17	20	1.95
54494808--54494969	41	4.0	41	77	4	148	34	28	16	20	1.94
54497471--54497591	2	60.5	2	100	0	242	49	0	50	0	1.00
54499792--54499850	9	6.6	9	82	0	73	32	11	25	30	1.92
54499792--54499850	27	2.2	27	90	0	91	32	11	25	30	1.92
54509125--54509170	14	3.4	14	73	14	51	56	8	0	34	1.30
54512269--54512332	32	1.9	34	81	12	80	62	1	3	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54512279--54512339	27	2.3	26	81	10	79	63	0	1	34	1.04
54514666--54514725	30	2.0	30	100	0	120	40	16	13	30	1.87
54522083--54522124	22	1.9	22	90	0	66	42	19	16	21	1.89
54538805--54538865	20	3.1	20	77	9	54	47	0	8	44	1.33
54538818--54538865	16	3.0	16	82	8	53	52	0	6	41	1.27
54538819--54538869	20	2.6	21	81	9	63	54	0	3	41	1.19
54546709--54546747	20	2.0	20	85	10	53	64	10	2	23	1.37
54546723--54546788	33	2.0	33	87	0	96	59	7	1	31	1.35
54548706--54548752	24	2.0	24	82	0	58	38	19	19	23	1.93
54551297--54551338	20	2.1	20	100	0	84	23	9	9	57	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208