genome.fa.s18.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  111  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36570660--36570694	3	11.7	3	87	0	52	60	0	5	34	1.21
36570663--36570694	12	2.7	12	100	0	64	59	0	6	34	1.23
36572319--36572473	44	3.5	44	76	1	168	27	27	15	29	1.96
36572312--36572473	88	1.8	88	90	0	261	28	26	16	29	1.97
36572452--36572540	45	2.0	45	88	0	133	28	25	17	28	1.98
36572566--36572913	88	4.0	88	90	1	531	25	25	22	26	2.00
36572621--36572847	44	5.2	44	67	10	176	26	25	21	25	2.00
36572518--36572913	88	4.5	88	87	4	518	26	25	21	26	2.00
36572529--36573452	86	10.8	85	79	10	548	26	23	21	28	1.99
36572903--36573050	75	2.0	75	95	0	269	29	22	20	28	1.98
36573043--36573352	43	7.2	42	63	12	155	27	24	20	28	1.99
36572976--36573452	172	2.8	172	94	0	828	26	23	20	30	1.98
36572753--36573452	258	2.8	247	89	4	994	26	23	21	29	1.99
36573086--36573395	43	7.2	43	62	11	134	25	22	22	30	1.99
36574534--36574580	21	2.2	21	84	0	58	25	36	10	27	1.89
36574674--36574741	8	8.6	8	81	15	88	11	13	0	75	1.06
36574665--36574741	15	5.0	15	81	13	86	12	14	0	72	1.12
36574665--36574741	23	3.4	22	85	8	100	12	14	0	72	1.12
36575599--36575700	24	4.2	23	73	11	80	3	6	6	82	0.94
36575646--36575701	9	6.0	9	76	14	51	1	3	10	83	0.83
36575599--36575700	16	6.0	16	70	20	55	3	6	6	82	0.94
36579746--36580263	217	2.4	218	93	2	889	33	19	16	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36579724--36580263	108	5.0	108	90	4	836	33	18	16	30	1.94
36580237--36580278	18	2.4	17	84	11	57	30	9	7	52	1.61
36580392--36580489	4	22.8	4	75	13	63	71	4	4	20	1.19
36580392--36580521	8	14.3	9	70	20	76	70	3	5	20	1.23
36580392--36580521	20	7.2	18	69	22	76	70	3	5	20	1.23
36580436--36580506	5	14.4	5	82	10	69	73	2	2	21	1.09
36580850--36580884	3	11.7	3	87	0	52	60	0	5	34	1.21
36580853--36580884	12	2.7	12	100	0	64	59	0	6	34	1.23
36582214--36582266	2	26.5	2	96	0	97	52	0	47	0	1.00
36584183--36584319	73	1.9	72	87	1	202	27	25	25	21	2.00
36584377--36584554	94	1.9	93	89	1	275	29	24	21	24	1.99
36584954--36585025	28	2.5	28	79	2	81	19	0	44	36	1.51
36585265--36585306	21	2.0	22	85	4	59	19	0	42	38	1.51
36585285--36585327	15	2.9	15	79	3	52	20	0	44	34	1.52
36585967--36586224	135	1.9	138	91	5	425	46	12	13	27	1.78
36589472--36589505	16	2.1	16	89	10	52	23	0	32	44	1.54
36590284--36590397	46	2.7	43	75	13	110	45	18	0	35	1.56
36590349--36590408	17	3.6	16	73	8	57	45	16	0	38	1.48
36590367--36590644	77	3.4	77	68	22	201	46	16	1	35	1.57
36590501--36590572	17	4.2	17	72	13	58	44	13	1	40	1.53
36590509--36590572	25	2.5	26	87	2	94	43	14	1	40	1.54
36591079--36591171	43	2.2	43	90	0	141	24	23	35	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36591944--36592062	42	2.8	42	93	0	193	33	21	21	22	1.97
36592049--36592144	38	2.5	39	91	1	149	16	20	22	39	1.92
36592461--36592506	21	2.2	21	84	0	56	4	45	15	34	1.66
36597971--36598522	9	66.2	9	73	16	417	30	1	21	46	1.63
36598010--36598586	34	16.8	34	70	19	258	29	2	20	47	1.62
36597980--36598522	25	21.8	25	82	6	629	30	2	21	46	1.63
36598066--36598294	16	17.1	14	64	25	72	29	0	21	48	1.56
36598032--36598522	124	4.0	123	90	4	720	30	2	21	46	1.62
36598571--36598805	12	19.8	12	67	16	96	27	1	17	53	1.53
36598501--36598797	95	3.1	95	96	0	540	27	1	17	53	1.52
36598754--36598818	24	2.9	22	80	10	69	26	3	18	52	1.60
36598501--36598861	190	1.9	190	85	6	480	27	1	17	52	1.54
36598941--36598981	20	2.0	21	95	4	75	53	0	0	46	1.00
36598938--36598981	21	2.1	20	87	8	61	54	0	0	45	0.99
36599021--36599072	16	3.1	16	84	10	68	42	1	15	40	1.58
36599019--36599075	9	6.7	9	78	9	66	42	1	14	42	1.55
36600747--36600837	44	2.1	44	93	0	155	34	7	32	25	1.84
36602018--36602072	7	7.9	7	76	9	51	45	38	0	16	1.47
36602093--36602119	7	3.9	7	100	0	54	55	29	0	14	1.40
36602371--36602749	115	3.3	114	75	9	299	27	22	18	30	1.98
36602676--36602817	73	1.9	74	85	4	198	29	22	17	30	1.97
36604051--36604075	13	1.9	13	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36604757--36604859	32	3.4	31	72	10	104	58	3	8	29	1.46
36604760--36604860	29	3.2	32	75	9	118	59	3	7	28	1.44
36605106--36605166	29	2.1	30	87	9	90	32	14	6	45	1.71
36612825--36612938	45	2.5	45	77	8	124	41	12	21	25	1.87
36615287--36615342	25	2.2	25	81	6	69	21	23	23	32	1.98
36616021--36616105	40	2.1	40	97	0	161	25	4	22	47	1.71
36619479--36619535	20	2.8	20	86	0	69	22	31	0	45	1.53
36623886--36623925	21	1.9	21	90	10	64	50	17	5	27	1.67
36625497--36625524	11	2.5	11	100	0	56	67	0	0	32	0.91
36634122--36634155	17	1.9	18	88	5	52	2	26	38	32	1.71
36635940--36635982	13	3.1	14	84	12	54	60	0	0	39	0.97
36638451--36638549	3	33.0	3	82	0	108	57	1	7	34	1.33
36645797--36645852	26	2.2	26	80	6	60	35	21	3	39	1.71
36645808--36645860	13	4.1	13	80	9	63	37	22	5	33	1.78
36645808--36645860	26	2.0	26	88	0	79	37	22	5	33	1.78
36652358--36652415	29	2.0	29	89	0	89	31	1	34	32	1.68
36652712--36652772	11	5.4	11	73	7	50	65	0	29	4	1.13
36655115--36655149	14	2.4	15	85	9	54	42	0	2	54	1.15
36663255--36663381	67	1.9	67	90	3	202	28	31	18	21	1.97
36663533--36663655	57	2.1	60	85	13	166	23	24	20	31	1.98
36665696--36665734	18	2.2	18	100	0	78	48	7	10	33	1.66
36665771--36665844	36	2.1	36	87	5	105	22	17	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36668570--36668752	54	3.5	53	81	3	226	21	15	20	43	1.88
36668583--36668752	27	6.4	26	85	6	191	20	15	19	44	1.86
36669797--36669846	24	2.0	25	84	3	66	26	36	0	38	1.57
36682783--36682843	26	2.3	26	80	0	77	29	18	16	36	1.92
36688373--36688420	24	2.0	24	84	8	62	45	0	14	39	1.45
36703638--36703676	20	2.0	20	100	0	78	25	30	5	38	1.78
36706756--36706808	14	3.8	13	79	18	54	41	0	3	54	1.18
36708054--36708256	32	6.4	32	82	2	239	40	20	19	19	1.91
36708054--36708256	64	3.2	64	85	4	268	40	20	19	19	1.91
36708519--36708801	27	10.6	27	77	7	222	24	18	19	37	1.94
36719884--36719925	22	2.0	22	86	13	61	23	33	16	26	1.96
36728107--36728328	40	5.6	39	82	6	216	25	27	21	26	1.99
36728260--36728337	40	1.9	41	82	10	97	26	28	20	24	1.99
36736039--36736210	40	4.3	40	88	2	222	25	27	21	25	1.99
36760990--36761029	19	2.0	19	85	9	53	62	10	10	17	1.53
36772129--36772159	6	5.2	6	96	0	53	67	3	16	12	1.35
36773583--36773738	28	5.6	28	87	1	215	30	24	23	22	1.99
36773856--36773936	26	3.1	26	78	0	99	35	22	19	22	1.96
36774144--36774273	54	2.4	53	78	10	120	23	16	17	43	1.88
36774169--36774420	27	9.3	27	81	3	238	21	15	20	42	1.88
36774299--36774478	81	2.2	80	79	6	184	21	13	19	45	1.85
36775808--36775938	27	4.8	27	71	7	95	22	13	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36778530--36778600	33	2.1	34	84	2	90	26	26	23	22	2.00
36778569--36778714	28	5.2	28	86	6	181	31	23	20	23	1.98
36778783--36778863	26	3.1	26	78	7	110	32	24	23	19	1.98
36779091--36779369	27	10.3	27	76	6	206	20	14	18	45	1.85
36779093--36779369	54	5.1	53	79	4	261	20	14	18	46	1.84
36782042--36782188	28	5.3	28	83	5	174	29	21	24	24	1.99
36782274--36782411	28	4.9	28	84	5	163	28	24	23	23	1.99
36782000--36782459	227	2.0	227	93	1	780	30	26	20	22	1.98
36782471--36782563	26	3.5	26	81	7	91	36	21	23	18	1.95
36782742--36782820	27	3.0	27	96	3	144	30	15	11	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208