Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  62  of  208  ( 24943 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23284821--23284859
18
2.1
19
86
13
55
56
2
0
41
1.13
23285992--23286016
12
2.1
12
100
0
50
32
0
24
44
1.54
23287859--23287897
20
2.0
20
89
0
60
15
2
35
46
1.60
23297270--23297327
22
2.8
20
75
15
55
51
3
3
41
1.35
23302842--23302868
12
2.2
12
100
0
54
55
14
0
29
1.40
23307407--23307514
52
2.1
52
100
0
216
54
11
12
22
1.68
23313982--23314008
6
4.5
6
100
0
54
81
0
0
18
0.69
23314776--23314832
29
2.0
29
83
13
73
40
0
5
54
1.23
23320674--23320722
22
2.3
22
77
19
59
57
2
2
38
1.22
23323712--23324447
48
14.9
48
82
11
857
29
49
6
14
1.69
23323712--23324444
99
7.4
98
87
6
911
29
49
6
14
1.69
23323712--23324447
147
5.0
144
86
8
877
29
49
6
14
1.69
23324332--23324365
6
5.5
6
89
3
50
20
76
0
2
0.92
23324349--23324436
45
2.1
40
85
10
113
28
51
6
13
1.67
23324287--23324410
57
2.2
57
94
1
212
27
58
4
9
1.50
23324417--23324519
36
2.8
37
76
15
97
24
44
5
25
1.76
23325014--23325060
22
2.1
22
84
4
58
63
8
0
27
1.23
23331053--23331191
73
1.9
73
84
8
185
17
23
28
30
1.97
23331104--23331677
114
5.0
114
83
4
656
22
21
24
31
1.98
23330921--23331319
187
2.1
185
78
4
428
21
22
26
29
1.99
23331905--23331938
14
2.3
15
90
5
52
35
0
26
38
1.57
23331972--23332011
7
6.0
7
82
11
57
17
0
52
30
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23331973--23332011
12
3.1
12
88
7
51
17
0
51
30
1.46
23331982--23332027
19
2.3
21
85
7
60
21
0
45
32
1.52
23331973--23332026
26
2.1
26
82
0
63
22
0
46
31
1.52
23332111--23332199
7
12.6
7
80
7
72
23
1
44
30
1.60
23332483--23332524
18
2.3
19
88
8
61
83
0
4
11
0.79
23332483--23332532
18
2.6
19
81
15
59
80
2
4
14
0.95
23332999--23333409
198
2.1
197
93
2
700
29
17
19
32
1.95
23333809--23334402
296
2.0
296
97
0
1116
35
12
12
39
1.81
23334639--23334682
18
2.4
19
84
3
54
13
15
13
56
1.67
23334671--23334716
22
2.1
22
84
8
58
6
10
10
71
1.30
23335285--23335439
13
11.8
13
70
10
82
39
10
5
44
1.62
23335304--23335439
53
2.6
53
91
0
227
38
11
4
44
1.61
23335588--23335825
9
27.3
9
70
13
140
44
18
4
32
1.69
23335732--23335836
25
4.2
25
74
7
104
44
17
2
35
1.63
23341282--23341352
21
3.4
21
86
0
97
30
18
47
2
1.63
23355147--23355193
3
16.0
3
88
4
51
0
38
0
61
0.96
23356472--23356507
18
2.0
18
88
0
54
44
0
8
47
1.33
23360548--23360610
24
2.7
23
85
5
72
28
0
3
68
1.05
23360841--23360874
14
2.4
14
90
0
59
23
0
0
76
0.79
23360839--23360886
23
2.1
23
84
7
62
25
2
2
70
1.09
23363212--23363238
6
4.5
6
100
0
54
51
0
0
48
1.00
23366025--23366194
40
4.3
40
85
1
198
23
21
30
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23366048--23366194
79
1.9
80
86
1
215
23
20
29
25
1.99
23366047--23366229
79
2.3
80
80
1
199
25
20
29
24
1.99
23369634--23369904
43
6.3
43
88
2
357
27
29
19
23
1.98
23371942--23372036
27
3.5
28
72
13
76
27
2
3
67
1.17
23374317--23374397
37
2.2
36
85
10
110
41
6
0
51
1.27
23374330--23374422
25
3.7
25
79
13
111
40
6
0
52
1.27
23374686--23374772
14
6.1
14
78
12
63
34
39
2
24
1.68
23375443--23375595
41
3.8
41
88
4
213
29
26
20
23
1.99
23375637--23375766
40
3.2
41
79
5
149
20
21
20
37
1.94
23382393--23382432
18
2.2
19
90
4
64
55
5
0
40
1.22
23383710--23383742
16
1.9
18
88
11
52
60
0
0
39
0.97
23385152--23385260
50
2.2
50
100
0
218
37
9
9
44
1.68
23390391--23390435
23
2.0
23
82
8
56
44
6
2
46
1.42
23393584--23393792
92
2.3
91
86
5
278
45
3
4
46
1.39
23393720--23393767
26
1.9
25
84
16
64
45
0
2
52
1.12
23393815--23394220
120
3.4
120
95
2
710
43
2
5
49
1.39
23393942--23393984
15
2.8
15
82
10
52
44
0
4
51
1.22
23393966--23394163
66
3.2
66
66
21
190
42
3
6
47
1.44
23394001--23394188
61
3.1
61
67
14
181
43
2
6
47
1.40
23394053--23394104
15
3.6
15
80
12
56
44
0
1
53
1.11
23393942--23394127
59
3.1
59
67
14
173
42
2
5
49
1.39
23394182--23394223
15
2.7
16
82
14
52
45
0
2
52
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23394173--23394214
15
2.9
15
82
10
52
47
0
0
52
1.00
23397263--23397306
21
2.2
20
92
8
72
38
2
4
54
1.33
23404027--23404052
11
2.4
11
100
0
52
19
7
7
65
1.43
23408714--23408804
44
2.1
44
87
8
132
29
9
9
50
1.68
23410687--23410771
44
1.9
44
95
0
152
27
12
14
45
1.81
23411452--23411489
20
1.9
20
88
0
58
60
0
0
39
0.97
23421964--23421996
14
2.4
14
90
5
50
81
0
18
0
0.68
23431974--23432022
22
2.2
21
79
10
53
22
30
0
46
1.52
23433370--23433412
18
2.4
18
84
0
50
18
25
9
46
1.79
23434571--23434845
94
2.9
94
78
8
270
41
16
4
37
1.69
23436321--23436349
14
2.0
15
93
6
51
65
0
0
34
0.93
23437443--23437492
21
2.3
22
86
10
68
56
0
2
42
1.11
23437448--23437477
16
1.9
16
93
6
53
60
0
0
40
0.97
23440969--23441013
19
2.4
19
85
7
56
71
0
6
22
1.09
23444570--23444620
25
2.1
24
82
10
59
13
21
3
60
1.49
23448873--23448926
25
2.1
26
82
3
65
35
7
9
48
1.63
23453274--23453307
3
11.3
3
100
0
68
0
32
0
67
0.91
23455573--23455597
3
8.3
3
100
0
50
64
0
36
0
0.94
23460615--23460647
13
2.4
14
85
10
50
30
33
15
21
1.94
23460622--23460661
21
2.0
20
85
5
53
35
32
12
20
1.90
23460627--23460695
26
2.6
26
80
13
77
33
40
8
17
1.80
23461184--23461223
21
2.0
20
85
5
53
35
2
2
60
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23462754--23462784
3
10.3
3
92
0
53
67
3
29
0
1.06
23469396--23469503
31
3.5
30
70
13
85
53
6
2
37
1.41
23474430--23474892
44
10.6
44
70
11
193
28
20
19
31
1.97
23474411--23474979
175
3.3
174
93
1
958
28
21
19
30
1.97
23474983--23475237
87
2.9
87
81
8
261
26
24
20
28
1.99
23476449--23476541
7
14.0
7
87
9
83
8
18
0
73
1.08
23476465--23476498
8
4.4
8
88
3
52
11
14
0
73
1.10
23476466--23476526
6
9.7
6
89
10
63
11
16
0
72
1.13
23477379--23477446
10
6.5
10
74
15
66
1
16
0
82
0.75
23477415--23477448
7
5.1
7
89
10
54
0
11
0
88
0.52
23477415--23477448
13
2.7
13
95
4
61
0
11
0
88
0.52
23477451--23477491
12
3.2
13
82
10
57
12
0
7
80
0.90
23477415--23477481
21
3.3
20
84
10
75
5
5
4
83
0.90
23482221--23482249
14
2.0
15
93
6
51
62
0
0
37
0.96
23482225--23482300
18
4.2
18
68
9
57
53
5
2
38
1.37
23482191--23482257
12
5.8
12
71
13
50
53
1
5
38
1.34
23484961--23485006
16
2.9
16
83
6
58
41
0
6
52
1.27
23497979--23498038
26
2.3
24
76
20
59
45
15
5
35
1.68
23502451--23502497
22
2.1
23
88
4
69
51
4
2
42
1.33
23505167--23505240
31
2.4
31
86
0
103
28
14
10
45
1.79
23506458--23506502
18
2.5
18
74
0
54
60
8
0
31
1.28
23520956--23520992
17
2.1
19
85
10
51
59
16
2
21
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23521149--23521183
16
2.1
17
89
10
54
57
5
5
31
1.46
23521618--23521693
3
25.3
3
86
5
109
63
1
3
31
1.21
23522711--23522743
17
2.1
16
88
11
50
6
6
45
42
1.53
23524036--23524110
30
2.5
30
76
4
80
34
17
5
42
1.72
23536542--23536593
16
3.2
16
91
0
77
30
0
34
34
1.58
23536574--23536668
45
2.1
44
86
1
127
34
6
27
31
1.82
23536830--23536864
18
2.0
17
88
5
52
54
0
0
45
0.99
23536788--23536860
27
2.7
27
76
8
76
52
2
0
45
1.15
23536977--23537011
18
2.0
17
88
5
52
54
0
0
45
0.99
23536749--23537023
147
1.9
149
95
1
500
46
3
2
47
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208