genome.fa.s18.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  167  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53770843--53770870	14	2.0	14	100	0	56	42	0	0	57	0.99
53776317--53776362	22	2.1	22	88	8	67	30	0	6	63	1.20
53779509--53779559	13	3.9	13	81	0	66	35	25	7	31	1.85
53780265--53780328	29	2.2	30	85	2	85	32	6	17	43	1.74
53802490--53802586	47	2.1	47	98	0	185	39	27	7	25	1.82
53804260--53804297	18	2.1	19	85	5	51	18	21	7	52	1.70
53807864--53807911	13	3.7	13	83	10	71	29	8	25	37	1.85
53807862--53807928	26	2.6	27	81	13	86	34	7	25	32	1.84
53810396--53810437	16	2.5	17	92	7	77	66	4	0	28	1.12
53810575--53810617	3	14.3	3	100	0	86	67	0	0	32	0.91
53812047--53812618	50	11.4	50	70	3	396	25	25	20	29	1.99
53812063--53812635	100	5.7	100	93	0	923	25	24	20	28	1.99
53812818--53813286	44	10.4	45	68	19	216	26	24	17	31	1.97
53812823--53813085	89	2.9	89	90	1	400	26	24	18	30	1.98
53812972--53813221	133	1.9	134	88	0	385	29	22	18	30	1.97
53812820--53813192	89	4.2	88	82	5	383	27	24	17	31	1.97
53812982--53813448	89	5.2	89	81	3	429	27	23	18	30	1.98
53812981--53813261	133	2.1	133	85	2	377	29	22	18	29	1.97
53812883--53813313	222	1.9	225	89	1	670	27	23	19	30	1.98
53812817--53813449	314	2.0	312	89	3	959	26	23	18	30	1.97
53812870--53813449	44	13.0	44	71	6	389	26	23	18	30	1.98
53819772--53819837	3	22.0	3	100	0	132	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53829126--53829150	8	3.1	8	100	0	50	52	36	0	12	1.39
53830549--53830591	19	2.2	19	88	12	61	20	2	4	72	1.14
53841994--53842375	177	2.2	176	82	3	428	33	19	19	27	1.96
53842028--53842372	133	2.6	130	81	5	388	34	20	19	26	1.96
53841994--53842462	44	10.5	44	78	6	424	31	20	19	28	1.97
53842624--53842670	14	3.4	13	80	13	58	78	10	0	10	0.96
53842944--53843001	24	2.4	24	80	11	66	68	6	13	10	1.37
53842959--53843011	26	2.0	27	81	3	63	75	7	9	7	1.19
53845991--53846120	40	3.2	40	91	1	188	29	16	33	20	1.94
53846071--53846998	112	8.3	112	92	2	1488	28	18	26	25	1.98
53848709--53848903	82	2.3	83	88	3	284	34	20	17	27	1.95
53849116--53849181	33	2.0	33	100	0	132	33	15	15	36	1.88
53850139--53850178	11	3.7	11	96	3	73	37	10	25	27	1.88
53851531--53851751	40	5.7	40	72	22	202	44	10	2	42	1.51
53851571--53851812	57	4.2	57	92	3	387	44	11	2	42	1.51
53851505--53851687	97	1.9	97	97	0	348	44	10	1	43	1.48
53851737--53851828	44	2.1	44	95	0	166	41	9	2	46	1.49
53851785--53851866	13	6.3	13	72	9	69	41	8	2	47	1.47
53852008--53852229	73	3.1	73	98	1	428	50	1	6	41	1.36
53852012--53852229	72	3.0	72	98	0	418	50	1	6	41	1.36
53852285--53852363	18	4.4	18	71	25	78	46	18	0	34	1.50
53852276--53852523	33	7.0	35	63	28	91	45	20	0	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53852266--53852702	51	8.5	51	92	2	684	46	20	0	32	1.54
53852266--53852702	76	5.7	77	93	2	720	46	20	0	32	1.54
53852268--53852702	127	3.4	128	95	1	743	46	20	0	32	1.55
53852694--53852747	9	5.7	10	79	20	55	42	20	0	37	1.52
53858197--53858267	21	3.4	21	82	0	79	32	16	46	4	1.67
53858590--53858922	42	7.9	42	86	0	270	29	20	20	28	1.98
53858722--53858924	42	4.8	42	91	3	311	23	22	22	32	1.98
53859377--53859427	17	2.7	19	79	17	61	39	19	15	25	1.91
53859729--53859802	29	2.5	29	82	4	85	24	13	13	48	1.78
53862816--53862848	15	2.2	15	94	0	57	24	0	12	63	1.28
53874745--53875802	44	24.7	41	70	16	413	29	19	22	28	1.98
53874747--53875802	84	12.3	86	72	12	604	29	19	22	28	1.98
53874750--53875119	125	2.9	127	85	7	430	29	18	22	28	1.98
53874877--53875340	216	2.2	211	85	7	636	30	18	22	28	1.98
53875092--53875461	126	2.9	126	85	6	456	29	19	22	27	1.98
53874734--53875807	342	3.1	342	93	1	1819	29	19	22	28	1.98
53875524--53875802	128	2.2	128	90	0	441	29	21	21	27	1.99
53875303--53875756	217	2.1	215	85	4	603	29	20	21	28	1.98
53877923--53877953	15	2.1	15	93	0	53	25	0	12	61	1.32
53881744--53881799	23	2.6	21	83	13	69	58	1	0	39	1.08
53884825--53884929	37	2.8	37	76	12	99	52	0	11	35	1.44
53885280--53885346	20	3.3	20	76	16	59	59	1	4	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53885316--53885357	20	2.1	21	86	8	61	61	4	2	30	1.29
53885277--53885411	13	10.1	14	67	22	78	57	1	4	37	1.28
53885613--53885648	3	12.0	3	87	0	54	66	0	2	30	1.06
53885749--53885816	3	22.3	3	73	8	57	61	7	0	30	1.23
53886281--53886315	11	3.1	12	88	12	56	48	0	51	0	1.00
53888309--53888351	22	2.0	22	90	0	68	9	13	30	46	1.75
53888445--53888813	42	8.9	42	87	4	484	31	21	20	25	1.98
53889261--53889305	21	2.1	21	91	0	72	2	40	20	37	1.65
53894809--53894941	9	15.0	9	84	6	173	34	0	20	45	1.51
53894918--53895018	39	2.6	39	92	4	159	41	0	12	45	1.42
53894998--53895041	23	1.9	23	95	0	79	38	0	18	43	1.50
53894913--53895026	39	2.9	39	82	8	115	42	0	13	43	1.43
53895085--53895160	27	2.9	27	94	2	127	43	10	5	40	1.62
53895040--53895351	90	3.5	90	95	1	563	43	8	6	41	1.62
53895175--53895250	27	2.9	27	96	2	136	44	10	3	40	1.57
53895265--53895385	27	4.6	27	83	11	160	44	9	5	39	1.62
53895265--53895385	53	2.3	54	88	8	178	44	9	5	39	1.62
53895398--53895449	13	4.0	13	77	5	52	44	1	9	44	1.48
53897529--53897570	19	2.2	19	86	0	57	19	2	50	28	1.60
53898010--53898395	73	5.3	73	65	13	245	38	23	12	25	1.90
53898068--53898300	74	3.2	74	67	12	208	37	23	12	26	1.90
53898011--53898390	147	2.6	147	94	0	670	37	23	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53899136--53899189	23	2.3	25	78	18	62	37	35	1	25	1.67
53905357--53905392	19	1.9	19	88	5	56	61	0	8	30	1.26
53910351--53910426	32	2.4	32	84	2	91	39	5	3	51	1.43
53913741--53913824	36	2.2	36	83	12	96	10	13	5	70	1.33
53913778--53913841	30	2.1	30	85	0	83	9	4	6	79	1.04
53917421--53917445	13	1.9	13	100	0	50	48	12	0	40	1.40
53921815--53921861	23	2.0	23	83	4	58	36	6	19	38	1.77
53922246--53922292	23	2.0	23	84	8	60	38	2	0	59	1.09
53922384--53922427	23	1.9	23	85	0	61	36	9	9	45	1.68
53926562--53926667	24	4.5	22	71	23	81	30	4	2	62	1.30
53926880--53926906	2	13.5	2	100	0	54	48	0	0	51	1.00
53937614--53938105	113	4.3	114	81	4	533	32	18	20	28	1.96
53937636--53938094	230	2.0	226	84	1	585	32	18	19	28	1.96
53938343--53938372	7	4.3	7	91	0	51	23	0	36	40	1.55
53938305--53938361	27	2.1	27	86	0	78	15	0	36	47	1.46
53938517--53938602	14	6.1	14	74	8	77	22	0	29	48	1.50
53938517--53938571	27	2.0	27	86	6	76	16	0	34	49	1.46
53938520--53938571	7	7.7	7	80	4	54	15	0	36	48	1.45
53938723--53938755	7	4.7	7	92	0	57	18	0	36	45	1.49
53938714--53938755	21	2.0	21	90	9	68	19	0	35	45	1.50
53938772--53938801	15	2.0	15	93	0	51	63	3	0	33	1.11
53939014--53939051	20	1.9	20	100	0	76	31	0	7	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53939708--53939752	17	2.5	19	82	10	58	26	44	0	28	1.55
53940989--53941040	27	2.0	26	81	11	61	36	1	7	53	1.41
53941121--53941191	9	7.6	9	76	9	70	46	16	1	35	1.56
53941098--53941182	39	2.2	39	95	0	152	45	14	2	37	1.57
53941121--53941214	48	2.0	48	95	0	170	44	15	3	36	1.63
53941225--53941264	19	2.2	19	86	8	57	42	2	20	35	1.65
53942548--53942576	14	2.1	14	93	6	51	34	0	10	55	1.34
53943303--53943523	86	2.6	86	78	2	194	31	20	20	27	1.97
53943321--53943523	43	4.7	42	74	9	142	30	19	21	28	1.98
53944021--53944085	31	2.1	32	85	8	89	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208