genome.fa.s17.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  10  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3441512--3441546	3	11.7	3	100	0	70	65	0	34	0	0.93
3443347--3443443	43	2.3	43	82	5	117	30	22	20	25	1.98
3443520--3443577	7	8.1	7	77	11	55	56	3	0	39	1.16
3443519--3443578	23	2.7	22	75	12	61	56	3	0	40	1.16
3443530--3443585	23	2.4	24	82	8	71	53	3	0	42	1.18
3448972--3449006	15	2.4	15	90	4	54	48	0	8	42	1.33
3451018--3451042	6	4.2	6	100	0	50	16	36	32	16	1.90
3451350--3451420	20	3.6	20	76	1	63	46	0	2	50	1.16
3452861--3452907	22	2.2	21	85	11	60	48	27	0	23	1.51
3453274--3453551	41	6.8	40	77	8	254	32	30	14	22	1.94
3453277--3453551	82	3.3	82	84	2	354	32	30	14	22	1.94
3458130--3458229	26	3.8	26	77	9	94	26	30	13	31	1.93
3460385--3460433	24	2.0	24	100	0	98	24	0	51	24	1.49
3461343--3461381	17	2.3	17	86	8	53	35	15	7	41	1.76
3469282--3469341	30	1.9	31	83	6	77	38	1	43	16	1.58
3469661--3469733	22	3.4	21	74	14	60	42	13	2	41	1.59
3489340--3489389	19	2.6	19	81	12	59	78	0	20	2	0.86
3491507--3492105	307	2.0	307	83	2	765	30	21	19	29	1.97
3494064--3494120	16	3.7	15	80	19	73	68	0	0	31	0.90
3494086--3494143	24	2.4	25	80	16	68	63	1	0	34	1.04
3499209--3499266	26	2.2	27	78	3	64	29	10	6	53	1.61
3501180--3501413	42	5.6	43	78	12	236	36	26	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3501180--3501416	84	2.8	84	93	1	386	35	26	16	21	1.94
3501188--3501376	43	4.5	43	78	12	214	35	27	15	20	1.93
3503945--3503979	13	2.6	14	91	8	56	54	0	5	40	1.24
3505359--3505397	18	2.2	17	86	13	53	33	0	23	43	1.54
3505609--3505730	23	5.3	24	84	6	139	23	19	25	31	1.98
3505609--3505723	46	2.5	46	91	0	185	23	20	25	30	1.99
3510412--3510447	19	1.9	18	88	5	54	22	0	5	72	1.05
3510601--3510626	8	3.2	8	100	0	52	34	0	11	53	1.37
3518285--3518331	23	2.0	23	100	0	94	61	12	12	12	1.57
3521775--3521823	16	3.1	16	88	5	64	71	0	0	28	0.86
3521785--3521825	8	5.2	8	83	16	59	73	0	0	26	0.84
3521785--3521828	17	2.6	17	89	10	65	72	0	0	27	0.85
3521785--3521825	15	2.6	16	92	3	66	73	0	0	26	0.84
3521782--3521859	23	3.3	23	76	5	68	62	2	1	33	1.17
3530745--3530775	13	2.4	13	94	0	53	80	3	0	16	0.83
3530737--3530773	19	1.9	19	88	0	56	81	5	0	13	0.86
3530807--3530842	15	2.4	15	90	0	54	72	5	8	13	1.27
3532941--3533425	128	3.8	128	95	2	848	31	20	23	25	1.98
3533416--3533537	44	2.8	44	83	2	147	27	16	24	31	1.96
3538797--3538857	20	3.0	20	85	4	77	8	26	22	42	1.81
3539734--3539763	11	2.9	10	90	9	51	13	0	26	60	1.34
3541636--3541731	37	2.6	37	79	14	108	31	26	1	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3545492--3545546	25	2.2	25	96	0	101	43	16	0	40	1.48
3545719--3545770	25	2.1	25	96	0	95	42	13	0	44	1.44
3546199--3546241	18	2.4	18	88	0	68	44	9	27	18	1.80
3545823--3546822	500	2.0	500	100	0	2000	21	22	31	25	1.98
3546699--3546741	18	2.4	18	88	0	68	44	9	27	18	1.80
3548498--3548591	22	4.2	21	76	15	82	48	2	25	23	1.62
3548493--3548591	44	2.2	45	82	7	121	48	2	24	25	1.62
3548517--3548590	11	6.6	11	76	13	62	45	1	27	25	1.61
3552373--3552420	23	2.0	23	88	4	69	37	10	0	52	1.36
3552581--3552630	26	1.9	26	100	0	100	50	12	0	38	1.40
3554771--3554801	3	10.3	3	92	0	53	0	29	0	70	0.87
3559613--3559709	25	3.9	25	77	8	83	21	21	18	38	1.94
3559664--3559720	25	2.3	24	84	6	69	22	19	24	33	1.97
3563197--3564138	469	2.0	469	99	0	1866	27	17	21	33	1.95
3567614--3567758	20	7.2	20	65	14	75	20	33	14	31	1.93
3567578--3567777	80	2.5	80	88	0	285	18	32	16	33	1.93
3567578--3567779	40	5.1	40	81	0	217	18	31	16	32	1.94
3576688--3576743	22	2.5	23	82	5	69	35	7	16	41	1.75
3577415--3577507	37	2.5	37	80	3	98	39	13	15	31	1.86
3582141--3582218	33	2.4	33	86	0	111	44	34	6	14	1.70
3584174--3584277	37	2.8	37	72	4	93	44	17	13	25	1.85
3591012--3591041	16	1.9	15	93	6	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3593054--3593110	26	2.1	27	87	3	80	24	14	17	43	1.86
3603596--3603679	29	2.8	30	90	3	143	35	0	42	21	1.53
3606565--3606946	171	2.2	172	81	4	457	28	15	18	38	1.91
3606565--3607527	129	7.5	129	77	4	757	25	15	20	38	1.91
3606557--3607527	86	11.3	86	78	5	782	25	15	20	38	1.91
3606557--3607529	43	22.7	43	73	5	601	25	15	20	38	1.91
3611487--3611579	46	2.1	43	84	9	116	31	25	19	23	1.98
3611576--3611771	51	3.9	50	75	7	182	31	27	17	23	1.97
3611575--3611760	102	1.8	102	85	5	252	31	26	17	23	1.97
3614109--3614190	42	2.0	42	85	4	112	30	24	14	30	1.95
3632805--3632839	12	2.9	12	91	0	52	40	22	37	0	1.55
3637684--3640984	824	4.0	825	95	0	5885	40	21	14	23	1.91
3641869--3641941	9	8.2	9	93	1	94	23	10	26	39	1.87
3641872--3641941	18	3.9	18	92	0	104	24	10	27	38	1.87
3644192--3644244	23	2.3	23	93	0	88	24	18	26	30	1.98
3646401--3646452	24	2.2	24	89	0	77	55	9	1	32	1.43
3648371--3648422	24	2.2	24	89	0	77	55	9	1	32	1.43
3648628--3648677	3	16.7	3	91	0	82	62	0	4	34	1.14
3649190--3649236	15	3.1	15	75	6	51	53	0	0	46	1.00
3657382--3657414	15	2.2	15	100	0	66	48	21	6	24	1.72
3658937--3658995	25	2.4	25	88	0	82	33	16	25	23	1.96
3665613--3665642	13	2.3	13	94	0	51	10	10	0	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3665669--3665717	23	2.1	23	100	0	98	32	18	16	32	1.93
3666453--3666516	25	2.5	25	97	2	119	25	10	12	51	1.72
3666702--3666747	16	2.9	15	84	9	65	23	2	4	69	1.17
3666699--3666749	20	2.5	20	78	15	59	23	1	3	70	1.14
3668682--3668865	42	4.4	42	86	4	216	26	24	20	28	1.99
3669813--3669891	9	8.6	9	82	10	88	39	27	11	21	1.88
3669811--3669888	20	4.1	20	75	18	85	41	28	11	19	1.86
3669811--3669891	29	2.9	28	81	5	101	40	27	11	20	1.86
3669898--3670032	17	7.4	17	64	14	63	50	11	3	34	1.57
3669892--3670057	37	4.5	37	92	2	264	50	12	4	33	1.60
3669955--3670015	20	3.2	20	68	13	56	45	13	6	34	1.69
3672454--3672495	20	2.1	20	100	0	84	66	0	4	28	1.12
3675762--3675803	20	2.1	20	100	0	84	66	0	4	28	1.12
3677815--3677852	4	9.5	4	100	0	76	50	26	0	23	1.50
3703256--3703313	21	2.8	21	81	5	64	43	29	12	15	1.83
3711696--3711792	25	3.9	25	81	10	117	36	18	25	19	1.95
3715364--3715397	15	2.3	15	100	0	68	58	11	0	29	1.33
3742567--3742632	31	2.2	31	88	2	98	37	6	12	43	1.67
3760794--3760866	32	2.5	27	78	19	92	26	2	19	52	1.59
3760807--3760867	32	1.9	32	96	0	113	27	3	18	50	1.62
3770654--3770727	6	13.2	6	76	21	72	47	17	1	33	1.56
3770651--3770712	5	12.0	5	76	17	56	46	17	1	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3770650--3770726	11	7.5	11	79	15	94	46	18	1	33	1.57
3770650--3770726	20	3.8	21	83	16	108	46	18	1	33	1.57
3770724--3770751	14	2.0	14	100	0	56	71	0	14	14	1.15
3774083--3774173	46	2.0	46	97	0	173	48	5	5	40	1.49
3774842--3774895	20	2.8	20	86	13	85	51	9	9	29	1.65
3778877--3778917	18	2.5	16	82	17	57	51	4	4	39	1.45
3778881--3778916	18	2.0	18	100	0	72	50	5	5	38	1.49
3779311--3779345	3	11.7	3	100	0	70	34	0	0	65	0.93
3784348--3784985	318	2.0	318	88	1	949	28	19	27	24	1.98
3786035--3786090	24	2.3	24	81	9	60	37	1	3	57	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203