genome.fa.s17.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  55  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17805621--17806101	114	4.2	114	89	0	694	28	26	20	23	1.99
17807259--17807297	19	2.1	19	100	0	78	28	10	30	30	1.90
17809915--17809959	12	3.7	12	79	5	54	48	6	13	31	1.68
17809939--17809984	23	2.0	22	87	4	65	54	10	10	23	1.67
17810062--17810107	24	1.9	24	90	0	74	39	8	15	36	1.78
17810489--17810578	43	2.1	43	85	0	117	27	21	26	24	1.99
17814985--17815280	159	1.9	158	84	2	405	28	18	20	32	1.96
17817485--17817536	24	2.2	24	85	0	68	53	9	3	32	1.51
17827855--17828057	96	2.1	96	85	3	266	41	17	19	21	1.90
17827990--17828126	69	2.0	69	86	2	195	42	18	19	19	1.90
17828064--17828225	81	2.0	82	86	3	229	40	17	19	21	1.91
17828247--17828579	81	3.9	81	71	15	244	41	21	18	19	1.91
17828099--17828800	177	3.9	177	88	4	933	40	20	17	21	1.91
17828531--17828800	96	2.8	96	87	2	373	40	20	17	22	1.91
17828531--17828849	96	3.3	95	80	5	367	40	20	16	21	1.91
17828504--17828849	192	1.8	192	83	5	466	39	20	18	21	1.92
17833361--17833394	15	2.3	15	100	0	68	58	14	11	14	1.63
17842547--17842583	17	2.2	17	95	0	65	0	18	0	81	0.70
17842547--17842603	16	3.5	16	80	7	53	1	15	5	77	1.03
17845261--17845309	22	2.3	21	80	13	55	22	2	12	63	1.39
17846281--17846310	10	3.0	10	90	0	51	53	10	0	36	1.35
17846271--17846310	20	2.0	21	90	5	64	55	10	2	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17846435--17846459	13	1.9	13	100	0	50	36	0	0	64	0.94
17850507--17850592	32	2.6	34	83	9	122	19	24	17	38	1.93
17853385--17853429	20	2.1	22	84	12	58	13	11	8	66	1.44
17856546--17856678	50	2.6	51	83	3	162	24	28	10	36	1.89
17859710--17859734	12	2.1	12	100	0	50	32	0	8	60	1.26
17870060--17871231	586	2.0	586	99	0	2317	36	19	8	35	1.82
17871935--17872087	45	3.4	45	86	0	216	41	20	17	20	1.91
17872032--17872114	39	2.2	39	86	6	116	38	21	20	19	1.93
17872291--17872376	40	2.2	40	83	6	104	40	19	5	33	1.76
17873571--17873694	46	2.8	46	91	3	200	27	22	16	33	1.96
17873571--17873768	37	4.8	45	84	10	207	26	21	16	35	1.94
17873657--17873795	37	3.8	37	95	0	233	25	21	13	38	1.90
17877057--17877096	17	2.3	17	91	4	62	5	12	7	75	1.18
17877112--17877143	16	1.9	17	93	6	57	53	3	0	43	1.16
17877108--17877169	25	2.5	25	79	7	72	50	3	0	46	1.17
17877256--17877306	16	2.8	19	77	20	63	52	0	0	47	1.00
17877252--17877311	19	3.4	18	73	17	54	50	0	0	50	1.00
17877266--17877315	14	3.4	14	89	10	82	56	0	0	44	0.99
17877962--17878032	36	2.0	36	100	0	142	29	16	16	36	1.92
17877998--17878151	46	3.6	46	80	16	220	29	22	15	32	1.95
17877919--17878151	82	2.9	80	89	5	346	29	21	15	32	1.95
17878055--17878126	36	2.0	36	97	0	135	31	19	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17882442--17882518	25	3.1	25	81	3	75	32	20	23	23	1.98
17885184--17885239	24	2.3	24	100	0	112	19	37	12	30	1.89
17885442--17885487	24	1.9	24	90	0	74	19	23	17	39	1.92
17885472--17885519	25	2.0	25	87	4	71	16	25	20	37	1.93
17888304--17888792	31	16.0	30	71	10	258	43	15	7	33	1.75
17888304--17888792	92	5.3	92	84	1	590	43	15	7	33	1.75
17888328--17888792	61	7.6	60	72	11	268	43	15	7	33	1.76
17888750--17888833	41	2.0	41	83	0	105	44	19	3	33	1.68
17888791--17888874	31	2.7	31	83	3	89	40	15	5	38	1.72
17891571--17891604	16	2.1	17	94	5	61	50	0	8	41	1.34
17891598--17891633	13	2.8	13	86	0	54	50	2	0	47	1.15
17891889--17891934	24	2.0	23	86	4	65	65	6	2	26	1.28
17892248--17892288	20	2.0	20	90	0	64	36	7	7	48	1.59
17892248--17892297	20	2.4	21	80	16	59	36	8	6	50	1.57
17895717--17895744	14	2.0	14	100	0	56	35	14	7	42	1.73
17904105--17904143	20	2.0	19	85	5	51	7	15	25	51	1.70
17905134--17905172	19	2.0	19	90	5	60	28	7	0	64	1.21
17908396--17908435	14	2.9	14	84	0	53	32	7	17	42	1.77
17914667--17914722	26	2.2	26	86	0	76	66	5	1	26	1.23
17914678--17914752	36	2.0	38	90	10	120	65	0	1	33	1.01
17917728--17917753	5	5.2	5	100	0	52	19	57	0	23	1.40
17918588--17918633	18	2.6	18	79	10	58	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17918588--17918635	19	2.6	20	78	18	59	41	2	0	56	1.11
17918596--17918633	17	2.2	17	82	13	51	44	2	0	52	1.14
17920136--17920215	20	4.1	19	76	6	61	61	2	3	32	1.27
17920197--17920269	19	3.9	18	77	8	65	50	0	6	42	1.29
17920267--17920324	10	5.7	10	75	17	57	55	3	3	37	1.34
17920267--17920324	21	2.9	19	75	12	62	55	3	3	37	1.34
17920334--17920387	21	2.6	21	85	8	67	53	1	7	37	1.40
17920539--17920565	12	2.2	12	100	0	54	59	0	40	0	0.98
17920571--17920764	20	9.9	20	69	18	88	37	3	1	58	1.23
17920666--17920725	28	2.2	26	80	16	68	33	3	0	63	1.11
17920635--17920736	37	2.7	38	82	10	111	36	3	0	58	1.23
17931744--17931842	48	2.0	50	94	3	175	22	12	12	53	1.70
17932515--17932557	22	2.0	21	86	13	61	32	0	18	48	1.48
17941364--17941420	26	2.2	26	87	6	80	15	22	22	38	1.92
17943826--17943858	14	2.4	14	100	0	66	51	0	24	24	1.48
17947801--17947833	2	16.5	2	100	0	66	51	0	48	0	1.00
17951607--17951631	9	2.8	9	100	0	50	8	32	0	60	1.26
17959912--17959937	5	5.2	5	100	0	52	38	19	19	23	1.93
17968690--17968749	30	2.0	31	83	3	77	41	0	40	18	1.50
17972594--17972627	14	2.3	15	90	5	52	26	2	2	67	1.19
17972863--17972914	21	2.5	19	77	17	50	34	1	3	59	1.27
17974008--17974202	105	1.9	101	82	8	241	27	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17977936--17977987	26	2.0	26	96	0	95	28	11	13	46	1.78
17995375--17995456	41	2.0	41	100	0	164	39	14	9	36	1.79
17997108--17997165	30	1.9	30	89	0	89	41	3	24	31	1.71
17997377--17997408	13	2.5	13	94	0	55	31	0	12	56	1.37
17997503--17997687	50	3.7	50	99	0	361	26	23	32	16	1.96
18002409--18002526	41	2.9	40	82	5	146	35	23	18	22	1.96
18003894--18003918	13	1.9	13	100	0	50	40	24	4	32	1.73
18009605--18009807	63	3.3	63	90	5	312	31	21	24	23	1.98
18011460--18011484	13	1.9	13	100	0	50	40	24	4	32	1.73
18011731--18011773	18	2.5	17	82	17	54	23	2	2	72	1.08
18016890--18016947	11	5.0	11	76	19	55	79	0	15	5	0.90
18016891--18016947	16	3.3	16	77	17	69	78	0	15	5	0.91
18018105--18018535	44	9.6	44	67	13	180	30	16	21	31	1.95
18018105--18018559	89	5.0	88	71	11	278	30	16	21	31	1.95
18018091--18018559	181	2.6	181	89	0	713	31	16	20	31	1.95
18018147--18018490	92	3.7	92	74	11	317	31	16	20	31	1.95
18020163--18020210	18	2.8	18	82	14	57	22	2	4	70	1.15
18020231--18020285	12	4.5	13	84	8	55	32	7	3	56	1.44
18020242--18020285	18	2.4	18	81	7	54	34	9	2	54	1.44
18024549--18024607	24	2.5	24	88	0	91	44	0	25	30	1.55
18024673--18024737	20	3.4	19	69	14	62	35	4	15	44	1.67
18024648--18024760	37	3.1	37	94	1	192	32	4	15	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18024660--18024754	17	5.2	17	65	14	55	33	3	13	49	1.58
18024761--18024886	9	13.6	9	86	6	180	23	9	31	35	1.87
18025047--18025071	12	2.1	12	100	0	50	16	24	36	24	1.94
18033276--18033315	19	2.2	19	86	4	55	55	0	15	30	1.41
18033733--18033785	22	2.4	22	84	6	63	18	28	9	43	1.81
18042635--18042670	15	2.4	15	95	0	63	61	2	8	27	1.39
18046400--18046440	18	2.3	17	84	12	55	34	14	12	39	1.84
18050813--18050867	25	2.2	25	87	12	78	49	9	0	41	1.34
18059619--18059654	15	2.4	15	90	9	56	36	0	2	61	1.11
18059715--18059747	16	2.0	17	94	5	59	39	12	24	24	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203