genome.fa.s17.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  33  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10992272--10992300	12	2.5	12	94	5	51	68	0	0	31	0.89
11004034--11004086	14	3.8	14	73	16	56	39	1	5	52	1.36
11006858--11006908	17	3.0	17	97	0	93	35	13	11	39	1.82
11008115--11008169	27	2.0	27	100	0	110	43	21	3	30	1.70
11008334--11008566	112	2.1	112	82	7	278	22	22	24	30	1.99
11008902--11008950	18	2.5	21	80	9	59	61	10	2	26	1.39
11009216--11009246	15	2.0	16	93	6	55	16	0	45	38	1.47
11009538--11009615	14	5.6	14	73	0	66	7	0	44	47	1.31
11010033--11010541	230	2.2	230	89	1	752	28	18	19	33	1.95
11010871--11010914	19	2.3	19	84	0	61	31	43	2	22	1.66
11012428--11012489	20	3.2	20	86	4	90	46	6	4	41	1.51
11012528--11013496	26	37.4	26	98	0	1854	49	19	0	30	1.50
11013454--11013502	14	3.7	14	71	15	50	44	24	0	30	1.54
11013800--11013870	21	3.4	21	80	0	79	33	18	45	2	1.64
11014094--11014127	14	2.4	14	95	0	59	17	8	20	52	1.71
11014196--11015197	42	23.9	42	97	0	1830	24	21	21	33	1.97
11015409--11015465	28	2.0	30	86	10	84	31	12	1	54	1.48
11020014--11020073	31	2.0	31	86	3	86	36	11	8	43	1.71
11021873--11021990	46	2.6	46	84	5	143	27	18	22	32	1.97
11032808--11032836	15	1.9	15	100	0	58	6	0	48	44	1.29
11043861--11043929	34	2.0	34	100	0	138	40	17	11	30	1.85
11047476--11047534	17	3.3	17	73	13	55	55	5	0	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11047589--11047647	27	2.1	27	84	6	73	64	3	8	23	1.37
11049600--11049717	61	2.0	60	87	1	173	38	14	11	35	1.81
11049702--11049978	86	3.2	84	70	13	204	37	14	12	35	1.84
11059753--11059806	27	2.0	27	100	0	108	33	22	29	14	1.94
11064699--11064774	13	5.2	13	71	20	53	38	9	3	48	1.54
11064686--11064796	45	2.5	45	95	0	195	37	8	6	47	1.59
11069296--11069377	33	2.5	35	77	18	86	43	2	2	51	1.28
11069576--11069626	13	3.9	13	81	0	66	37	27	5	29	1.80
11071862--11071924	31	2.0	31	87	6	92	44	7	12	34	1.72
11088485--11088625	9	15.1	9	67	11	70	62	5	4	27	1.37
11088615--11088671	26	2.3	26	82	8	75	64	0	1	33	1.04
11088615--11088678	25	2.6	23	77	18	67	62	0	3	34	1.11
11089038--11089128	9	10.1	9	74	11	71	28	1	3	67	1.14
11089019--11089114	28	3.5	27	78	13	90	26	1	4	68	1.14
11089018--11089127	9	11.9	9	70	21	52	26	0	4	68	1.15
11091548--11091694	30	4.9	30	88	2	174	26	47	4	21	1.68
11092005--11092052	16	3.1	15	90	6	69	31	2	2	64	1.16
11092005--11092056	8	6.5	8	82	8	61	30	1	1	65	1.14
11093653--11093684	11	2.8	12	95	4	57	25	0	0	75	0.81
11093863--11093898	11	3.3	11	88	0	54	61	8	8	22	1.51
11094304--11094463	41	3.9	41	85	0	205	41	19	23	15	1.89
11104037--11104095	28	2.1	28	96	0	109	42	6	11	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11105235--11105261	8	3.4	8	100	0	54	59	25	0	14	1.36
11106098--11106158	21	3.1	20	71	15	56	8	14	3	73	1.19
11106092--11106170	16	4.6	16	73	18	61	8	12	3	74	1.18
11106021--11106206	94	2.0	95	95	3	340	11	12	5	70	1.33
11107819--11108324	109	4.6	109	93	0	805	31	15	18	34	1.93
11108372--11108428	21	2.7	21	83	0	78	49	15	21	14	1.80
11110021--11110278	43	6.0	43	83	4	333	21	17	31	30	1.96
11123599--11123633	10	3.2	11	88	12	54	17	37	0	45	1.48
11123616--11123671	22	2.5	22	91	2	94	28	30	0	41	1.57
11123644--11123755	51	2.2	51	95	0	197	29	25	0	45	1.54
11124894--11124918	7	3.6	7	100	0	50	28	0	12	60	1.32
11125570--11125604	18	1.9	18	100	0	70	22	31	11	34	1.90
11126026--11126111	43	2.0	45	86	4	122	36	0	12	51	1.40
11126117--11127048	23	39.5	23	71	21	643	44	25	1	27	1.64
11126234--11127196	23	43.0	20	69	23	304	44	25	1	28	1.64
11126197--11127268	73	15.1	71	64	29	272	44	25	1	28	1.64
11126179--11127150	45	20.6	45	83	11	1084	44	25	1	28	1.64
11127075--11127216	23	6.0	23	79	15	173	47	21	0	30	1.56
11126283--11127242	119	8.2	119	70	20	523	44	25	1	28	1.64
11127140--11127253	50	2.2	52	84	4	160	46	24	0	28	1.59
11127204--11127270	22	3.1	22	82	6	84	43	22	1	32	1.62
11127275--11127608	116	2.9	116	97	0	614	38	9	8	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11127584--11127625	17	2.4	18	80	4	50	42	9	2	45	1.49
11130642--11130992	125	2.8	125	85	6	507	31	22	15	30	1.95
11135222--11135253	12	2.6	13	85	14	50	37	0	6	56	1.25
11136994--11137145	36	3.6	44	77	17	171	35	15	22	26	1.94
11139519--11139626	33	3.3	32	82	2	126	20	9	29	40	1.83
11139520--11139638	33	3.6	33	79	6	125	20	10	29	40	1.85
11139566--11139648	33	2.5	33	86	3	96	22	10	30	36	1.89
11143694--11143881	51	3.7	49	82	4	223	30	26	14	28	1.95
11144351--11144415	30	2.2	30	82	0	76	32	23	7	36	1.83
11147872--11147896	10	2.5	10	100	0	50	52	0	32	16	1.44
11149606--11149708	52	2.0	51	98	0	188	36	19	6	35	1.78
11158734--11158776	21	2.0	22	95	4	79	74	2	0	23	0.93
11165498--11165526	15	1.9	15	100	0	58	20	27	17	34	1.95
11170518--11170544	14	1.9	14	100	0	54	40	0	0	59	0.98
11173391--11173593	3	67.7	3	100	0	406	66	0	0	33	0.91
11179802--11179839	14	2.7	14	88	8	51	42	47	0	10	1.38
11179927--11179965	7	5.6	7	87	0	60	46	25	0	28	1.53
11179931--11179970	14	2.9	14	88	0	53	42	25	0	32	1.55
11181067--11181114	25	2.0	25	83	4	62	43	14	10	31	1.79
11187116--11187160	23	1.9	24	86	4	65	53	0	4	42	1.21
11188533--11188557	3	8.3	3	100	0	50	36	0	0	64	0.94
11190886--11190910	7	3.6	7	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11193099--11193134	16	2.2	17	90	5	56	50	0	0	50	1.00
11199037--11199067	15	2.1	15	100	0	62	19	29	12	38	1.89
11206784--11206821	7	5.7	7	84	9	53	71	10	18	0	1.14
11206781--11206831	14	3.8	13	80	10	59	68	9	21	0	1.18
11210082--11210146	28	2.2	28	84	13	78	43	0	0	56	0.99
11217478--11217506	14	2.0	15	93	6	51	27	0	20	51	1.47
11217677--11217733	28	2.0	28	86	6	80	56	0	7	36	1.27
11218330--11218506	64	2.8	64	85	6	220	32	6	16	43	1.75
11218640--11218728	41	2.2	41	97	0	169	25	17	21	34	1.96
11218640--11218744	41	2.6	41	92	3	158	23	18	23	34	1.96
11222306--11222737	51	8.5	50	76	7	347	27	15	25	31	1.95
11222305--11222539	102	2.3	102	91	2	382	28	14	26	31	1.94
11222306--11222690	151	2.5	153	82	5	433	27	15	26	31	1.95
11227345--11227395	21	2.4	21	86	0	66	23	11	39	25	1.89
11227511--11227558	19	2.6	19	83	3	62	56	0	2	41	1.11
11231268--11231370	43	2.4	43	79	6	102	38	24	14	22	1.91
11252776--11252964	93	2.0	92	91	1	306	35	4	5	55	1.42
11252994--11253023	9	3.4	9	90	9	53	36	0	0	63	0.95
11255610--11255710	50	2.0	50	94	0	175	40	6	15	36	1.75
11256111--11256632	123	4.1	124	88	4	683	27	17	16	38	1.92
11256156--11256632	249	1.9	246	87	3	699	26	17	15	40	1.90
11256707--11256793	34	2.6	32	82	13	104	43	13	1	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11260908--11260976	24	2.9	24	69	16	63	36	1	0	62	1.04
11273844--11273891	15	3.3	15	73	5	53	31	0	25	43	1.55
11273838--11273897	29	2.1	29	90	0	93	30	0	28	41	1.56
11277175--11277237	27	2.3	27	75	5	65	23	12	14	49	1.78
11278304--11278400	30	3.2	30	76	2	106	27	27	15	28	1.96
11281231--11281365	67	2.1	65	81	13	154	41	14	8	34	1.78
11319371--11319419	23	2.1	23	84	0	62	46	10	2	40	1.49
11333632--11333661	15	2.0	15	100	0	60	20	0	73	6	1.05
11337771--11337967	50	3.8	50	83	8	220	28	21	26	22	1.99
11339455--11339530	9	8.4	9	85	0	98	40	25	9	25	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203