genome.fa.s17.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  148  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47114335--47114374	20	2.0	20	90	0	62	40	25	30	5	1.77
47141084--47141134	23	2.2	23	92	0	84	45	21	5	27	1.75
47149830--47150039	40	5.3	39	87	5	233	24	21	28	25	1.99
47149777--47150039	120	2.2	120	81	4	300	25	21	27	25	1.99
47149830--47150074	80	3.1	80	81	3	228	25	21	28	24	1.99
47152417--47152459	13	3.4	13	80	6	52	72	4	13	9	1.26
47154731--47154983	132	1.9	133	89	2	393	31	16	5	46	1.70
47160103--47160141	19	2.1	19	90	0	60	28	25	0	46	1.53
47162622--47162688	34	2.0	34	85	2	91	29	13	8	47	1.73
47163126--47163181	25	2.3	25	79	11	64	51	0	1	46	1.11
47164198--47164264	30	2.3	28	82	14	75	49	2	4	43	1.38
47179504--47180013	256	2.0	259	88	3	762	36	12	16	34	1.86
47181376--47181953	46	12.6	46	82	2	644	44	14	17	22	1.86
47181878--47181949	22	3.2	22	64	13	56	51	12	18	18	1.76
47193380--47193434	26	2.2	25	78	12	58	27	7	16	49	1.72
47196313--47196593	51	5.6	51	74	7	218	28	26	16	28	1.97
47196313--47196593	102	2.8	102	84	4	347	28	26	16	28	1.97
47197255--47197348	30	3.1	30	75	3	107	54	11	18	15	1.71
47197285--47197333	16	3.1	16	94	5	91	57	12	18	12	1.65
47203967--47204351	49	7.7	49	76	9	305	28	25	15	29	1.96
47203960--47204351	51	7.8	50	78	7	320	28	25	15	29	1.96
47206800--47206832	17	2.1	17	88	11	52	42	0	24	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47207123--47207419	46	6.5	46	88	3	422	42	13	20	23	1.87
47207123--47207419	91	3.3	91	87	4	438	42	13	20	23	1.87
47207123--47207419	137	2.2	136	87	3	427	42	13	20	23	1.87
47211957--47212007	21	2.5	20	83	6	57	70	13	1	13	1.25
47218239--47218468	40	5.8	40	86	2	264	20	28	15	35	1.94
47218241--47218476	80	3.0	80	83	1	294	21	28	15	34	1.94
47223690--47223738	24	2.0	24	84	0	62	44	22	6	26	1.76
47223759--47223995	27	8.8	27	80	7	209	22	17	17	42	1.89
47223784--47223995	81	2.6	81	83	1	273	22	16	17	42	1.88
47223784--47223996	27	7.9	27	79	10	213	23	16	17	42	1.88
47225486--47225539	25	2.2	25	86	0	72	20	46	11	22	1.82
47228767--47228887	40	3.0	40	82	0	152	20	31	16	31	1.95
47237135--47237192	30	1.9	30	89	0	89	41	3	24	31	1.71
47238143--47238383	50	4.7	50	83	3	275	26	22	30	20	1.98
47238196--47238380	100	1.8	101	91	1	309	27	23	30	18	1.98
47238822--47238962	56	2.7	50	86	6	183	25	21	30	21	1.99
47238822--47238970	50	2.8	53	85	6	196	24	21	30	23	1.99
47241511--47241557	22	2.1	22	96	0	85	31	10	19	38	1.86
47242220--47242265	21	2.2	21	88	0	65	34	8	4	52	1.52
47251546--47251758	6	35.5	6	73	7	74	28	7	1	61	1.33
47251606--47251646	15	2.7	16	81	11	59	31	9	0	58	1.31
47251687--47251762	30	2.5	30	84	0	98	26	9	0	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47251875--47251914	12	3.6	11	90	9	64	10	2	5	82	0.91
47253809--47253890	25	3.3	25	83	6	103	17	43	12	26	1.84
47254017--47254066	22	2.4	22	86	6	68	22	2	12	64	1.37
47256160--47256442	72	4.0	71	79	5	266	34	5	12	48	1.63
47256924--47256951	13	2.2	13	100	0	56	57	7	0	35	1.26
47258426--47258519	46	2.0	46	97	0	179	39	17	20	23	1.92
47263200--47263333	66	2.0	66	82	2	162	44	18	22	14	1.85
47269658--47269738	20	4.0	20	71	18	60	11	28	18	41	1.84
47272492--47272525	15	2.3	15	94	0	59	32	26	11	29	1.92
47279146--47279175	15	2.0	15	93	0	51	50	6	0	43	1.28
47296006--47296215	40	5.3	39	89	4	242	25	21	27	25	1.99
47295953--47296215	120	2.2	120	82	4	309	25	21	27	25	1.99
47295954--47296250	80	3.7	80	81	6	230	26	21	27	24	1.99
47298714--47299179	233	2.0	233	94	0	815	28	18	30	23	1.98
47304132--47304314	80	2.3	80	82	4	210	25	20	27	26	1.99
47304132--47304314	40	4.6	39	83	6	179	25	20	27	26	1.99
47313330--47313371	22	1.9	22	95	0	75	30	9	14	45	1.77
47317340--47317383	21	2.1	21	87	4	63	20	40	13	25	1.89
47326067--47326111	23	2.0	23	95	0	81	55	4	15	24	1.59
47327150--47327198	21	2.3	21	79	6	55	61	4	20	14	1.49
47331234--47331475	27	9.0	27	81	6	258	41	19	20	18	1.91
47331234--47331474	81	3.0	81	83	6	301	41	19	20	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47331654--47331751	26	3.8	26	86	0	115	14	23	24	37	1.92
47334527--47334677	42	3.6	42	84	0	203	21	22	34	21	1.97
47341705--47341767	21	3.0	21	88	2	90	30	3	33	33	1.74
47342847--47342888	10	4.3	10	78	6	50	28	9	23	38	1.86
47345918--47345962	19	2.3	20	84	7	65	6	11	2	80	0.99
47348165--47348200	18	2.0	18	88	0	54	13	8	2	75	1.15
47348169--47348223	29	1.9	28	89	10	85	10	5	3	80	1.01
47348173--47348212	11	3.3	12	86	10	55	10	7	5	77	1.11
47348191--47348226	18	2.0	18	94	0	63	13	5	8	72	1.27
47348537--47348580	21	2.1	21	91	0	70	31	2	34	31	1.70
47350145--47350180	18	2.0	18	88	0	54	13	8	2	75	1.15
47350149--47350203	29	1.9	28	89	10	85	10	5	3	80	1.01
47350153--47350192	11	3.3	12	86	10	55	10	7	5	77	1.11
47350171--47350206	18	2.0	18	94	0	63	13	5	8	72	1.27
47350517--47350560	21	2.1	21	91	0	70	31	2	34	31	1.70
47351642--47351683	10	4.3	10	78	6	50	28	11	23	35	1.91
47359852--47360160	30	10.4	30	73	10	206	23	24	12	38	1.90
47360030--47360108	29	2.7	30	86	7	108	18	26	11	43	1.84
47372273--47372388	54	2.1	54	87	3	162	33	10	13	42	1.79
47372286--47372378	19	5.1	19	71	16	70	31	11	11	45	1.77
47379096--47379167	33	2.2	33	87	5	101	11	29	6	52	1.62
47379116--47379163	17	3.0	15	78	9	51	8	29	6	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47379155--47379218	21	3.2	20	74	10	60	7	25	0	67	1.17
47380540--47380583	10	4.2	10	88	5	61	20	2	2	75	1.03
47382360--47382531	54	3.2	54	94	0	290	32	12	13	40	1.83
47382429--47382521	19	5.1	19	72	17	88	31	11	11	45	1.77
47382634--47382671	9	4.0	9	87	12	58	21	0	21	57	1.40
47382640--47382671	11	3.1	11	91	8	50	18	0	18	62	1.33
47384106--47384147	20	2.1	20	86	0	57	19	33	11	35	1.88
47387327--47387379	17	2.8	20	80	16	76	71	0	13	15	1.14
47400493--47400715	39	5.7	40	86	7	273	25	22	27	24	2.00
47400493--47400715	79	2.8	81	85	8	282	25	22	27	24	2.00
47400493--47400748	79	3.3	79	82	9	224	26	21	27	24	1.99
47405396--47405429	17	1.9	18	94	5	61	70	0	2	26	1.01
47407824--47408008	100	1.9	100	84	0	253	29	22	20	28	1.98
47422053--47422100	20	2.4	20	85	0	60	22	31	16	29	1.96
47422064--47422105	20	2.1	20	90	0	66	21	28	14	35	1.92
47424473--47424525	15	3.5	15	74	5	54	60	5	3	30	1.37
47425215--47425253	18	2.2	18	86	9	53	69	5	20	5	1.28
47426186--47426692	44	11.7	44	85	2	650	26	23	21	29	1.99
47426663--47427182	88	5.9	88	84	3	496	22	25	26	26	2.00
47426861--47427193	44	7.6	45	66	9	166	22	24	27	26	2.00
47426684--47427192	176	2.9	176	86	0	678	22	24	26	26	2.00
47428399--47428611	83	2.6	81	77	8	198	11	25	12	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47433893--47433945	3	17.7	3	76	0	52	60	5	1	32	1.31
47434630--47434668	18	2.2	18	86	9	53	69	5	20	5	1.28
47435371--47435644	41	6.6	40	77	9	244	22	18	24	33	1.96
47435415--47435648	84	2.8	84	92	0	396	20	19	25	35	1.96
47445274--47445312	20	2.0	20	90	10	62	15	23	5	56	1.59
47445522--47445812	56	5.6	51	81	8	202	25	29	20	25	1.99
47445665--47445806	56	2.5	56	97	0	266	27	30	17	23	1.97
47464622--47464691	28	2.6	28	86	4	99	25	10	12	51	1.71
47470025--47470078	25	2.2	25	96	0	99	22	48	7	22	1.75
47472596--47472680	19	4.6	19	69	19	72	30	12	12	43	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203