genome.fa.s17.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  57  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18383001--18383027	13	2.1	13	100	0	54	44	14	7	33	1.73
18383164--18383196	16	2.1	16	100	0	66	30	6	18	45	1.73
18383363--18383407	23	2.0	22	82	4	54	40	4	17	37	1.70
18383991--18384030	16	2.4	17	83	8	55	27	7	0	65	1.20
18385745--18385789	18	2.6	17	79	6	54	8	2	6	82	0.93
18386497--18386551	3	18.0	3	84	3	74	30	3	1	63	1.22
18386713--18386750	14	2.7	14	84	12	51	39	2	0	57	1.12
18392657--18392699	20	2.2	20	82	0	50	30	4	16	48	1.66
18404151--18405647	44	33.8	44	74	8	1018	31	17	22	28	1.97
18404151--18405589	89	16.2	89	84	4	1349	31	17	22	28	1.97
18404140--18405589	133	10.9	133	79	5	1491	31	17	22	28	1.97
18404151--18405661	222	6.8	221	79	5	1439	31	17	22	28	1.97
18408727--18408781	16	3.4	16	85	9	76	29	25	5	40	1.78
18408974--18409046	20	3.9	20	74	18	68	61	2	1	34	1.19
18415810--18415871	21	3.0	21	69	9	54	38	16	27	17	1.91
18415856--18415965	42	2.6	42	71	8	98	41	19	21	17	1.90
18415856--18415965	21	5.2	21	76	8	89	41	19	21	17	1.90
18445324--18445364	5	8.2	5	94	0	73	43	19	19	17	1.88
18454327--18454441	57	2.0	56	93	1	194	40	19	13	26	1.88
18457444--18457517	30	2.5	31	82	4	80	39	12	5	43	1.65
18460756--18461721	133	7.3	131	90	4	1402	29	25	16	28	1.96
18463173--18463319	73	2.0	73	95	0	267	31	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18478131--18478171	11	3.2	13	76	16	50	14	12	26	46	1.80
18486461--18486561	20	4.9	21	68	19	59	17	21	16	43	1.88
18486498--18486577	42	1.9	41	82	7	99	15	20	20	45	1.86
18488895--18488960	25	2.7	25	84	11	75	22	24	3	50	1.63
18488954--18489133	90	2.0	90	90	4	283	30	22	15	32	1.94
18489035--18489248	101	2.1	101	86	1	295	27	24	14	33	1.95
18491138--18491181	11	3.8	11	82	11	61	61	0	0	38	0.96
18497659--18498333	104	6.5	105	84	7	818	37	14	15	32	1.88
18503940--18503973	11	3.0	11	95	4	59	17	35	0	47	1.48
18503963--18504013	22	2.3	22	93	0	84	27	29	0	43	1.55
18505863--18505902	18	2.2	18	95	0	71	22	30	7	40	1.81
18506308--18506356	25	2.0	25	100	0	98	44	0	14	40	1.45
18506633--18506667	16	2.2	16	100	0	70	48	28	0	22	1.51
18506568--18507254	282	2.5	280	91	4	1090	48	24	2	25	1.62
18506423--18507269	23	36.5	23	79	9	848	48	23	2	25	1.63
18506424--18507282	259	3.4	260	81	7	746	48	23	2	25	1.63
18507297--18507513	115	1.9	115	90	4	348	40	9	7	42	1.67
18511327--18511374	16	2.9	17	78	9	55	35	14	0	50	1.44
18513258--18513453	97	2.0	99	83	7	253	38	7	7	45	1.61
18513393--18513526	72	1.9	68	86	6	187	39	8	10	41	1.69
18513977--18514037	20	2.9	21	78	9	70	60	4	0	34	1.18
18516151--18516214	10	6.6	10	75	12	62	39	1	3	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18516150--18516200	19	2.7	20	87	9	79	41	0	1	56	1.10
18516150--18516206	19	2.9	20	84	10	64	42	1	1	54	1.21
18516514--18516576	20	3.3	19	76	12	58	30	3	1	65	1.18
18516553--18516592	21	2.0	21	85	5	55	27	5	2	65	1.27
18516539--18516592	19	2.7	20	80	11	58	29	7	1	61	1.34
18516583--18516677	27	3.4	27	79	16	97	34	5	1	58	1.27
18517311--18517362	20	2.7	20	74	14	54	48	0	1	50	1.12
18520238--18520425	59	3.2	59	66	11	150	41	3	3	51	1.35
18520227--18520515	119	2.4	120	93	2	492	43	2	4	50	1.34
18520347--18520402	15	3.5	18	75	24	63	42	0	0	57	0.99
18520301--18520483	56	3.1	58	66	23	146	42	2	6	49	1.39
18520467--18520501	18	2.0	17	88	5	52	45	0	0	54	0.99
18520455--18520729	147	1.9	149	95	1	500	47	2	3	46	1.35
18520614--18520648	18	2.0	17	88	5	52	45	0	0	54	0.99
18520810--18520904	45	2.1	44	84	1	118	33	25	5	35	1.78
18520885--18520936	16	3.2	16	91	0	77	36	34	0	28	1.58
18527284--18527421	73	1.9	73	89	0	213	24	25	27	22	2.00
18527497--18527647	68	2.2	68	83	4	189	33	19	23	23	1.97
18529726--18529928	46	4.3	46	87	7	280	36	14	21	28	1.92
18529660--18529911	98	2.6	98	94	0	450	34	15	21	28	1.94
18529892--18530000	37	3.0	37	94	2	186	37	16	21	24	1.93
18532592--18532643	15	3.2	15	75	19	59	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18533684--18533727	22	2.0	22	86	8	63	36	4	4	54	1.41
18537792--18537968	61	2.9	61	67	15	157	45	1	6	47	1.35
18537937--18537971	18	2.0	17	88	5	52	45	0	0	54	0.99
18539413--18539474	31	2.0	31	84	12	83	24	17	17	40	1.91
18548216--18548292	28	2.7	28	83	4	100	41	11	1	45	1.49
18548368--18548434	27	2.5	27	92	0	107	26	29	28	14	1.96
18548684--18548724	3	13.7	3	94	0	73	0	2	31	65	1.05
18555284--18555414	21	6.3	20	75	17	115	0	33	0	66	0.92
18555342--18555450	21	5.3	22	71	20	67	0	34	0	65	0.93
18555348--18555472	4	30.5	4	74	18	89	0	33	0	66	0.92
18555309--18555425	34	3.6	34	75	14	111	0	34	0	65	0.93
18555348--18555477	26	5.4	26	78	15	131	0	34	0	65	0.93
18555348--18555472	48	2.6	47	76	16	141	0	33	0	66	0.92
18555314--18555468	63	2.5	65	84	11	191	0	34	0	65	0.93
18555348--18555478	22	5.8	22	76	18	119	0	34	0	65	0.93
18555514--18555580	27	2.5	27	92	0	107	14	28	29	26	1.96
18555631--18555668	17	2.2	18	90	4	60	13	0	15	71	1.16
18555654--18555728	28	2.7	28	87	4	107	45	1	10	42	1.47
18559229--18559282	19	2.8	19	94	0	99	37	9	16	37	1.81
18559218--18559289	38	2.0	36	84	10	94	37	9	16	36	1.82
18559229--18559305	38	1.9	40	87	10	113	36	7	16	38	1.78
18559698--18559929	77	3.1	73	68	18	220	25	16	1	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18559623--18559930	154	2.0	154	98	0	589	25	15	2	56	1.52
18565386--18565413	12	2.3	12	100	0	56	42	14	17	25	1.87
18565530--18565578	17	2.8	17	87	3	62	81	2	12	4	0.91
18566600--18567263	45	14.8	45	87	4	826	28	17	23	30	1.97
18567318--18567632	40	7.5	40	69	12	184	29	24	20	24	1.99
18567271--18567707	127	3.4	127	94	0	748	31	23	20	24	1.98
18567665--18567792	41	3.0	43	68	11	109	32	20	19	28	1.97
18567525--18567919	212	1.9	212	89	1	612	31	22	20	26	1.98
18567758--18567941	43	4.3	41	69	11	129	32	20	22	25	1.98
18567784--18567980	40	4.8	40	71	13	155	29	21	22	26	1.99
18567737--18568008	127	2.1	127	92	1	447	31	21	20	26	1.98
18568039--18568146	45	2.4	45	92	0	180	24	17	23	35	1.95
18568179--18568717	50	10.8	50	67	4	300	30	22	22	24	1.99
18568179--18568782	99	6.1	100	83	5	661	29	22	22	24	1.99
18568179--18568782	199	3.0	198	86	2	809	29	22	22	24	1.99
18570451--18570482	12	2.8	11	90	9	55	34	3	0	62	1.11
18579439--18579490	27	1.9	27	81	14	63	38	3	3	53	1.37
18580126--18580528	197	2.0	197	99	0	790	30	13	18	37	1.90
18595522--18595591	35	2.0	35	100	0	140	40	20	8	31	1.82
18599626--18599681	21	2.5	22	82	5	69	28	19	30	21	1.98
18603135--18603671	266	2.0	267	96	0	995	40	6	18	34	1.77
18605322--18605356	18	1.9	18	94	0	61	28	8	17	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18607574--18607713	40	3.5	40	74	10	117	31	23	17	27	1.97
18607870--18607916	24	2.0	24	84	16	62	51	19	0	29	1.47
18612314--18612365	24	2.2	24	89	0	77	55	9	1	32	1.43
18614427--18614451	2	12.5	2	100	0	50	0	48	0	52	1.00
18658728--18658758	15	2.1	15	93	0	53	25	9	22	41	1.84
18667267--18667428	43	3.8	43	76	9	154	32	27	17	22	1.96
18667258--18667413	84	1.9	84	82	8	201	31	28	17	22	1.96
18672624--18672677	21	2.6	21	75	0	63	27	3	35	33	1.75
18679299--18679323	13	1.9	13	100	0	50	64	0	0	36	0.94
18683500--18683536	12	3.0	13	80	11	51	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203