genome.fa.s17.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  16  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5182049--5182404	85	4.3	79	78	12	310	46	21	0	31	1.52
5181984--5182368	113	3.4	112	83	11	384	46	22	0	31	1.54
5182300--5182404	23	4.3	23	80	13	122	47	21	0	30	1.51
5182224--5182386	86	1.9	86	93	0	281	46	22	0	31	1.52
5187921--5187980	20	3.0	21	78	7	63	65	8	5	21	1.40
5189129--5189163	18	1.9	18	88	0	52	20	22	28	28	1.98
5189577--5190245	44	15.3	44	69	12	323	27	22	21	28	1.99
5189787--5190253	217	2.2	217	93	0	792	27	20	21	29	1.98
5189709--5190028	173	1.8	173	84	6	412	28	21	21	29	1.98
5190246--5190469	88	2.5	88	86	0	322	19	21	28	30	1.98
5190306--5190443	44	3.2	43	63	4	105	18	23	28	29	1.98
5191723--5191751	5	6.0	5	92	8	51	0	0	17	82	0.66
5191827--5191859	14	2.3	15	89	5	50	27	30	12	30	1.92
5196962--5197005	21	2.0	22	86	4	63	65	4	4	25	1.30
5200175--5200268	44	2.1	45	88	4	136	22	32	0	44	1.53
5203105--5203401	50	5.8	50	83	5	321	25	20	29	23	1.99
5213447--5213500	26	2.1	26	100	0	108	33	14	16	35	1.90
5219927--5220075	31	4.9	31	76	7	126	44	16	8	30	1.78
5219930--5220062	61	2.2	61	81	1	149	45	16	9	28	1.79
5220086--5220220	31	4.4	31	74	15	136	41	17	6	34	1.75
5220079--5220252	92	1.9	92	92	0	294	40	17	7	35	1.78
5224026--5224123	31	3.2	31	79	0	115	23	9	20	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5225045--5225093	24	2.0	24	96	0	89	24	20	18	36	1.94
5225574--5225613	18	2.2	18	95	0	71	35	15	15	35	1.88
5228001--5228111	54	2.1	54	89	0	168	24	32	25	18	1.97
5242842--5242888	17	2.6	18	80	10	60	57	14	10	17	1.65
5247101--5247144	22	2.0	23	86	13	65	40	6	9	43	1.63
5249608--5249643	17	2.2	17	90	5	56	77	0	19	2	0.88
5252071--5252123	22	2.4	22	81	12	72	43	15	7	33	1.74
5257344--5257731	40	9.7	40	98	0	722	22	26	20	31	1.98
5267078--5267430	176	1.9	182	83	8	459	38	5	3	52	1.41
5268592--5268640	16	2.9	16	84	6	53	16	0	28	55	1.42
5268611--5268640	9	3.3	9	90	0	51	13	0	26	60	1.34
5269150--5270392	620	2.0	620	99	0	2459	33	9	19	37	1.84
5269942--5271093	576	2.0	576	100	0	2304	32	9	19	38	1.84
5272316--5272422	46	2.3	46	98	0	205	34	13	22	29	1.92
5275102--5275172	37	1.9	37	88	0	106	36	14	9	39	1.79
5276790--5276862	30	2.4	31	81	6	87	24	6	2	65	1.30
5276840--5276939	38	2.6	38	82	4	130	27	3	3	67	1.20
5276840--5276928	19	4.7	19	68	12	67	26	2	3	67	1.18
5277344--5277411	9	7.6	9	78	6	57	44	22	7	26	1.79
5277345--5277411	18	3.7	19	80	11	79	43	22	7	26	1.80
5277345--5277411	27	2.5	27	82	0	98	43	22	7	26	1.80
5282241--5282292	22	2.4	22	80	0	59	15	19	34	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5283911--5283973	26	2.4	25	82	10	72	19	11	14	55	1.68
5286408--5286459	20	2.8	18	78	21	63	51	3	1	42	1.31
5287555--5287588	16	2.1	16	88	0	50	55	8	0	35	1.31
5287548--5287603	23	2.4	24	79	8	62	55	5	1	37	1.33
5290428--5290531	7	15.0	7	72	13	63	43	36	0	19	1.58
5290428--5290608	14	12.9	14	69	14	86	44	32	1	21	1.62
5290497--5290608	7	15.7	7	68	10	57	47	28	1	22	1.61
5290918--5291143	41	5.6	41	85	1	276	29	26	19	24	1.98
5290920--5291143	81	2.8	81	85	2	263	29	25	19	25	1.98
5293202--5293227	13	2.0	13	100	0	52	15	38	7	38	1.76
5294884--5294917	17	2.1	16	88	5	50	61	0	26	11	1.30
5295372--5295433	29	2.1	29	82	5	72	27	24	27	20	1.99
5301029--5301083	6	8.5	6	90	7	74	20	61	0	18	1.34
5302154--5302193	14	2.9	14	84	0	53	32	7	17	42	1.77
5302177--5302216	20	2.0	20	90	0	62	27	10	12	50	1.72
5302162--5302228	34	1.9	35	90	3	109	31	8	13	46	1.74
5302156--5302232	14	5.0	15	71	20	52	32	9	15	42	1.78
5302360--5302410	26	2.2	24	78	21	56	60	5	0	33	1.21
5305402--5305431	6	5.0	6	95	0	51	36	0	63	0	0.95
5314338--5314377	18	2.2	18	90	0	62	22	15	5	57	1.57
5315556--5315617	32	1.9	32	90	0	97	30	22	32	14	1.94
5320876--5320933	19	3.1	18	74	16	55	75	5	17	1	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5326044--5326109	29	2.2	31	81	5	82	27	13	19	39	1.89
5333760--5333839	40	2.0	40	97	0	151	28	25	16	30	1.96
5334653--5334685	12	2.6	13	95	4	59	78	6	9	6	1.08
5340283--5340349	23	3.2	23	62	24	56	29	19	17	32	1.95
5340271--5340349	40	2.0	40	94	0	140	34	17	16	31	1.93
5343862--5343902	21	2.0	21	95	0	73	48	19	0	31	1.49
5347403--5347471	34	2.0	34	97	0	129	42	10	8	39	1.70
5349833--5349885	25	2.1	25	82	6	63	24	18	32	24	1.97
5358023--5358081	29	2.0	29	90	0	91	42	20	6	30	1.78
5370779--5370823	23	2.0	23	86	0	63	24	0	13	62	1.31
5371204--5371313	51	2.1	51	91	1	175	26	4	10	59	1.49
5375447--5375630	79	2.3	81	82	11	222	25	27	22	25	2.00
5375447--5375630	40	4.6	41	83	12	199	25	27	22	25	2.00
5383399--5383582	40	4.7	40	81	11	211	25	27	21	25	2.00
5383399--5383582	79	2.3	81	82	11	222	25	27	21	25	2.00
5385277--5385306	15	1.9	16	93	6	53	33	0	0	66	0.92
5385580--5385627	3	16.0	3	95	0	87	33	31	0	35	1.58
5395658--5395696	20	1.9	20	84	5	51	38	17	7	35	1.79
5401037--5401168	46	2.8	48	77	7	135	29	18	29	21	1.97
5401041--5401264	97	2.3	95	81	6	238	30	20	27	20	1.98
5401139--5401264	48	2.6	49	80	9	141	30	23	26	19	1.98
5407743--5407847	43	2.4	43	82	0	120	32	24	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5418093--5418307	29	7.6	29	73	4	204	16	17	36	29	1.92
5418063--5418362	57	5.2	57	91	1	476	18	17	35	29	1.94
5418063--5418362	113	2.6	114	92	2	476	18	17	35	29	1.94
5422066--5422210	48	3.0	47	83	7	159	24	26	17	31	1.97
5434012--5434041	14	2.1	14	93	0	51	20	6	10	63	1.47
5438341--5438766	47	9.1	47	95	0	692	33	11	29	25	1.91
5438740--5438876	46	3.0	46	91	0	220	34	8	31	25	1.86
5443400--5443573	48	3.6	48	78	4	154	22	29	18	29	1.97
5446239--5446312	35	2.2	33	88	7	105	37	5	9	47	1.59
5448324--5448447	41	3.0	42	71	8	126	25	15	28	31	1.95
5456338--5456434	49	2.0	49	81	4	115	45	8	16	29	1.76
5476213--5476294	27	3.0	27	87	0	119	32	7	17	42	1.76
5480264--5480304	21	2.0	22	85	9	59	29	7	14	48	1.71
5480841--5480869	14	2.0	15	93	6	51	27	0	31	41	1.56
5483822--5483859	15	2.4	16	86	4	51	31	7	0	60	1.25
5496243--5496271	14	2.0	15	93	6	51	37	6	0	55	1.27
5496379--5496464	26	3.2	27	76	9	95	31	4	1	62	1.23
5496284--5496464	3	58.3	3	67	20	63	29	8	2	59	1.40
5496555--5496630	28	2.7	28	68	13	66	32	7	3	55	1.47
5496679--5496789	3	37.3	3	69	15	61	30	7	1	60	1.34
5496682--5496787	11	9.0	11	69	14	52	30	7	1	60	1.35
5496887--5496934	20	2.4	20	89	0	69	37	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5496907--5496962	14	3.7	14	75	20	51	35	0	1	62	1.06
5499350--5499411	31	2.0	31	96	0	115	45	4	12	37	1.64
5503424--5503462	19	2.1	19	100	0	78	41	5	15	38	1.69
5505452--5505484	10	3.4	10	91	4	50	60	0	0	39	0.97
5505439--5505488	11	4.5	12	80	12	54	64	0	0	36	0.94
5507106--5507140	12	3.2	11	88	11	54	91	0	8	0	0.42
5507411--5507461	16	3.2	16	72	2	50	52	0	0	47	1.00
5508148--5508181	9	3.7	9	88	4	50	41	0	0	58	0.98
5511509--5511538	15	2.0	15	100	0	60	26	20	20	33	1.97
5516061--5516264	43	4.8	42	78	5	135	26	17	23	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203