genome.fa.s17.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  37  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12246387--12247442	322	3.2	323	81	8	967	35	19	16	28	1.94
12247364--12247767	164	2.4	166	92	1	659	32	20	19	27	1.97
12246849--12247700	392	2.1	396	88	4	1238	32	19	17	29	1.95
12247529--12247699	74	2.3	76	85	6	231	32	20	19	28	1.97
12247917--12247951	14	2.5	14	95	0	61	60	5	17	17	1.55
12248022--12248221	72	2.8	73	81	6	219	37	22	14	25	1.92
12248168--12248359	53	3.5	53	68	10	163	38	21	13	26	1.91
12248221--12248416	57	3.5	57	68	10	179	34	26	14	24	1.94
12248147--12248428	110	2.6	110	98	0	537	36	23	14	25	1.93
12248510--12248683	76	2.3	77	84	6	228	32	19	19	28	1.96
12248663--12248697	14	2.5	14	95	0	61	60	5	17	17	1.55
12248419--12248901	167	2.9	167	83	9	556	34	20	17	27	1.95
12248592--12248924	181	1.9	174	84	6	445	34	20	18	27	1.95
12248587--12248945	86	4.1	86	82	7	418	35	19	17	27	1.94
12248809--12249200	142	2.8	140	92	1	667	36	20	17	25	1.94
12249037--12249142	54	1.9	54	85	9	144	37	19	15	27	1.92
12249133--12249298	72	2.3	71	88	4	244	42	20	14	22	1.88
12249173--12249419	122	2.0	124	89	3	383	39	22	13	24	1.90
12249298--12249472	71	2.5	70	86	3	228	34	23	14	28	1.94
12259843--12259912	26	2.7	26	87	10	99	4	5	20	70	1.26
12259843--12259909	28	2.5	26	90	7	100	4	5	20	68	1.29
12260933--12261005	24	2.9	24	73	11	65	64	4	0	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12261576--12261641	31	2.1	32	83	8	82	53	10	0	36	1.36
12275758--12275785	11	2.5	11	100	0	56	67	17	7	7	1.37
12277981--12278025	24	1.9	24	95	4	83	48	17	8	24	1.75
12281063--12281182	57	2.1	57	85	6	161	46	0	6	45	1.35
12283307--12283475	86	2.0	86	97	0	320	34	8	3	53	1.48
12283385--12283411	13	2.1	13	100	0	54	33	7	0	59	1.25
12283850--12283885	18	1.9	19	88	5	56	50	5	8	36	1.56
12289970--12290138	85	2.0	83	95	2	302	23	13	15	47	1.81
12289990--12290165	85	2.1	84	79	6	185	25	15	16	43	1.87
12298736--12298935	63	3.2	63	97	0	364	35	7	20	37	1.81
12304323--12304362	21	2.0	20	85	5	53	62	2	0	35	1.09
12304323--12304386	19	3.3	18	78	8	56	65	1	0	32	1.02
12304337--12304384	18	2.6	17	81	12	51	68	0	0	31	0.90
12315731--12315760	14	2.1	14	93	0	51	3	26	0	70	1.03
12316060--12316133	3	24.7	3	88	0	112	0	32	1	66	1.00
12325554--12325591	18	2.1	19	90	5	60	42	0	7	50	1.31
12326155--12326237	18	4.3	18	71	10	58	65	2	2	30	1.18
12326168--12326269	10	9.1	11	68	21	52	66	2	0	29	1.12
12326204--12326282	21	3.8	20	73	17	63	63	2	0	34	1.08
12326224--12326280	21	2.7	21	86	8	71	64	1	0	33	1.04
12331695--12331736	6	7.0	6	100	0	84	50	50	0	0	1.00
12339284--12339334	24	2.1	24	100	0	102	27	7	3	60	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12340621--12340696	40	1.9	40	100	0	152	38	23	5	32	1.77
12343065--12343234	42	4.0	42	86	1	234	30	28	15	25	1.96
12345669--12345726	31	2.0	28	83	10	71	44	13	6	34	1.71
12348739--12348859	51	2.4	49	75	11	111	53	1	0	43	1.16
12350833--12350865	15	2.1	16	88	11	50	33	6	3	57	1.38
12356316--12356375	24	2.6	23	89	2	84	53	3	16	26	1.59
12356320--12356375	23	2.4	24	87	3	78	51	3	16	28	1.60
12359656--12359690	16	2.1	16	89	10	52	62	0	5	31	1.18
12365569--12365632	23	2.8	23	81	9	85	31	7	3	57	1.43
12368068--12368671	229	2.7	219	85	4	782	29	17	21	31	1.96
12369062--12369307	14	17.1	14	68	15	69	22	1	38	37	1.64
12369131--12369186	21	2.6	21	78	18	62	25	0	33	41	1.56
12369147--12369196	21	2.4	21	83	6	57	26	0	36	38	1.57
12369174--12369234	29	2.2	27	85	11	79	21	0	44	34	1.53
12369184--12369228	22	2.0	22	83	8	56	24	0	42	33	1.55
12371704--12371728	3	8.3	3	100	0	50	68	0	0	32	0.90
12374092--12374202	55	2.0	55	98	0	213	32	15	25	27	1.95
12376448--12376617	66	2.6	66	89	1	243	38	16	30	15	1.89
12376599--12376658	21	2.9	21	76	0	75	36	15	43	5	1.68
12376992--12377058	31	2.2	31	86	5	91	34	14	25	25	1.94
12377034--12377134	43	2.3	43	89	0	157	27	16	29	25	1.97
12381865--12381964	21	4.9	20	73	15	64	61	1	2	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12381874--12381964	20	4.5	19	76	14	76	59	0	2	38	1.10
12381883--12381982	27	3.5	28	72	17	73	62	1	2	35	1.14
12381857--12381964	30	3.7	29	71	9	85	62	0	1	34	1.12
12381935--12381978	20	2.2	20	83	0	52	70	2	2	25	1.10
12382382--12382469	20	4.4	19	71	23	58	30	10	0	59	1.31
12385797--12385834	18	2.1	18	90	0	58	60	2	5	31	1.33
12390464--12390524	26	2.3	26	86	5	79	40	21	22	14	1.90
12394528--12394561	14	2.5	14	90	4	52	50	38	0	11	1.39
12396712--12396764	20	2.7	19	85	8	63	33	11	11	43	1.76
12396750--12396785	17	2.2	16	90	5	54	47	11	2	38	1.54
12396730--12396808	37	2.1	37	80	2	86	41	10	6	41	1.64
12396767--12396807	22	2.0	20	85	9	55	46	7	4	41	1.53
12396820--12396951	21	6.8	20	64	18	55	42	9	12	35	1.75
12396870--12397074	17	11.6	18	67	19	83	42	8	13	35	1.74
12396817--12396926	37	2.9	38	76	16	120	42	10	14	32	1.79
12396868--12396951	21	4.2	20	75	17	84	41	5	11	40	1.66
12396868--12397026	60	3.0	51	80	11	153	42	8	11	37	1.73
12396928--12397026	50	2.0	49	86	2	135	42	10	11	36	1.74
12396980--12397070	34	2.6	34	83	11	114	40	8	14	36	1.77
12397352--12397391	21	1.9	21	94	0	71	42	20	20	17	1.89
12397416--12397495	7	11.1	7	81	10	81	0	18	2	78	0.86
12397419--12397509	12	7.2	12	73	18	78	0	19	2	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12397419--12397504	32	2.7	31	80	7	91	0	18	2	79	0.85
12397772--12397815	18	2.4	18	88	0	70	6	27	47	18	1.73
12397859--12397939	6	13.3	6	89	6	65	0	27	0	72	0.84
12397859--12397902	13	3.5	13	84	12	56	0	20	0	79	0.73
12397869--12397940	3	25.0	3	85	5	96	0	29	0	70	0.87
12414757--12414802	3	15.0	3	82	13	58	0	36	0	63	0.95
12414771--12414799	10	2.9	10	100	0	58	0	37	0	62	0.96
12414757--12414802	13	3.7	13	81	18	62	0	36	0	63	0.95
12414858--12414907	10	5.2	10	80	7	59	0	30	0	70	0.88
12414862--12414904	19	2.3	19	88	11	63	0	30	0	69	0.88
12415155--12415271	30	3.9	29	77	11	94	44	3	21	30	1.69
12415170--12415271	30	3.4	30	83	2	125	44	3	21	30	1.70
12415618--12415662	22	2.0	22	100	0	90	24	40	31	4	1.75
12416643--12416668	2	13.0	2	100	0	52	50	0	0	50	1.00
12423435--12423495	28	2.2	28	88	2	88	34	4	21	39	1.75
12426776--12427243	124	3.8	124	75	9	407	38	20	13	27	1.90
12426783--12427246	248	1.9	248	81	1	563	37	20	13	27	1.90
12427157--12427382	120	1.9	121	82	11	288	38	17	11	31	1.86
12431890--12432044	75	2.1	74	81	3	177	34	7	4	53	1.49
12433495--12434023	216	2.4	216	86	3	711	29	12	14	42	1.83
12443382--12443409	14	2.0	14	100	0	56	28	0	28	42	1.56
12443868--12443943	27	2.7	28	75	18	77	38	2	10	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12455982--12456036	21	2.6	21	94	0	92	25	9	36	29	1.87
12456952--12457124	29	6.2	29	71	18	145	36	8	0	53	1.36
12456998--12457033	18	2.0	18	100	0	72	33	0	0	66	0.92
12456964--12457121	49	3.1	49	79	17	194	36	6	0	56	1.26
12457016--12457124	29	3.7	29	95	1	191	35	9	0	55	1.32
12457163--12457230	21	3.2	21	65	19	59	10	50	5	33	1.61
12457192--12457263	30	2.3	31	88	4	101	9	52	4	33	1.53
12457216--12457263	15	3.1	15	72	21	53	8	56	2	33	1.41
12457989--12458032	17	2.5	18	82	14	56	65	0	0	34	0.93
12457987--12458039	17	3.1	16	76	13	52	66	1	0	32	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203